Commit graph

67118 commits

Author SHA1 Message Date
Ricardo Wurmus
d7beb6da1c
gnu: r-emmeans: Update to 1.5.1.
* gnu/packages/cran.scm (r-emmeans): Update to 1.5.1.
2020-10-06 00:34:58 +02:00
Ricardo Wurmus
336804fc1d
gnu: r-multcomp: Update to 1.4-14.
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-14.
2020-10-06 00:34:58 +02:00
Ricardo Wurmus
65f463d3d8
gnu: r-sandwich: Update to 3.0-0.
* gnu/packages/cran.scm (r-sandwich): Update to 3.0-0.
2020-10-06 00:34:58 +02:00
Ricardo Wurmus
0ac936ea21
gnu: r-deriv: Update to 4.1.0.
* gnu/packages/cran.scm (r-deriv): Update to 4.1.0.
2020-10-06 00:34:58 +02:00
Ricardo Wurmus
5522640faf
gnu: r-sjlabelled: Update to 1.1.7.
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.7.
2020-10-06 00:34:58 +02:00
Ricardo Wurmus
b8b75e46b5
gnu: r-insight: Update to 0.9.6.
* gnu/packages/cran.scm (r-insight): Update to 0.9.6.
2020-10-06 00:34:58 +02:00
Ricardo Wurmus
75c394abbf
gnu: r-bibtex: Update to 0.4.2.3.
* gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.3.
2020-10-06 00:34:58 +02:00
Ricardo Wurmus
794a6bc342
gnu: r-openxlsx: Update to 4.2.2.
* gnu/packages/cran.scm (r-openxlsx): Update to 4.2.2.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
e3b821456b
gnu: r-import: Update to 1.2.0.
* gnu/packages/cran.scm (r-import): Update to 1.2.0.
[native-inputs]: Add r-knitr.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
6fbb3c9abe
gnu: r-trend: Update to 1.1.4.
* gnu/packages/cran.scm (r-trend): Update to 1.1.4.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
e010576266
gnu: r-statnet-common: Update to 4.4.1.
* gnu/packages/cran.scm (r-statnet-common): Update to 4.4.1.
[propagated-inputs]: Add r-rle.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
4cd4cf0925
gnu: r-tinytex: Update to 0.26.
* gnu/packages/cran.scm (r-tinytex): Update to 0.26.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
5f777b5ff2
gnu: r-xfun: Update to 0.18.
* gnu/packages/cran.scm (r-xfun): Update to 0.18.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
c4eff84f76
gnu: r-seriation: Update to 1.2-9.
* gnu/packages/cran.scm (r-seriation): Update to 1.2-9.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
e3199b4b4d
gnu: r-dtw: Update to 1.22-3.
* gnu/packages/cran.scm (r-dtw): Update to 1.22-3.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
54753cf0ee
gnu: r-vcd: Update to 1.4-8.
* gnu/packages/cran.scm (r-vcd): Update to 1.4-8.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
daba9cffc2
gnu: r-hardyweinberg: Update to 1.6.8.
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.8.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
fec04395bb
gnu: r-broom: Update to 0.7.1.
* gnu/packages/cran.scm (r-broom): Update to 0.7.1.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
6016d52f42
gnu: r-psych: Update to 2.0.9.
* gnu/packages/cran.scm (r-psych): Update to 2.0.9.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
f8ca0afa19
gnu: r-lava: Update to 1.6.8.
* gnu/packages/cran.scm (r-lava): Update to 1.6.8.
[native-inputs]: Add r-knitr.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
271e4a325e
gnu: r-getoptlong: Update to 1.0.3.
* gnu/packages/cran.scm (r-getoptlong): Update to 1.0.3.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
4fcf7626f7
gnu: r-htmltable: Update to 2.1.0.
* gnu/packages/cran.scm (r-htmltable): Update to 2.1.0.
2020-10-06 00:34:57 +02:00
Ricardo Wurmus
1b3d184e67
gnu: r-htmlwidgets: Update to 1.5.2.
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.2.
[native-inputs]: Add r-knitr.
2020-10-06 00:34:56 +02:00
Ricardo Wurmus
5f9f23f43c
gnu: r-rticles: Update to 0.16.
* gnu/packages/cran.scm (r-rticles): Update to 0.16.
2020-10-06 00:34:56 +02:00
Ricardo Wurmus
d7cfdc1229
gnu: r-fhtest: Update to 1.5.
* gnu/packages/bioconductor.scm (r-fhtest): Update to 1.5.
2020-10-06 00:34:56 +02:00
Ricardo Wurmus
65e361f98f
gnu: r-interval: Update to 1.1-0.7.
* gnu/packages/bioconductor.scm (r-interval): Update to 1.1-0.7.
2020-10-06 00:34:56 +02:00
Ricardo Wurmus
5412da848e
gnu: r-activedriverwgs: Update to 1.1.1.
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.1.
2020-10-06 00:34:56 +02:00
Ricardo Wurmus
b0728c4d7e
gnu: Add r-slider.
* gnu/packages/cran.scm (r-slider): New variable.
2020-10-06 00:34:56 +02:00
Ricardo Wurmus
64d4816881
gnu: Add r-warp.
* gnu/packages/cran.scm (r-warp): New variable.
2020-10-06 00:34:56 +02:00
Ricardo Wurmus
f5defed0df
gnu: Add r-rle.
* gnu/packages/cran.scm (r-rle): New variable.
2020-10-06 00:34:53 +02:00
Ludovic Courtès
880fe019ae
build: Use a 'guile' executable that doesn't warn about locales.
This gets rid of:

  guile: warning: failed to install locale

when running the 'guix' command on a foreign distro where 'GUIX_LOCPATH'
isn't set.

* Makefile.am (pkglibexec_PROGRAMS, guile_SOURCES, guile_LDADD)
(guile_CFLAGS): New variables.
(install-exec-hook): New target.
(AUX_FILES): Remove 'guile-launcher.c'.
* configure.ac: Use 'GUILE_FLAGS'.
2020-10-05 23:19:19 +02:00
Ludovic Courtès
1d4ab335b2
self: Use a 'guile' that doesn't complain about locales.
Since commit ba48895899, selected UTF-8
locales are bundled.  However, because 'guix-command' is itself a Guile
script, users would still see Guile's warning, particularly on foreign
distros:

  $ LC_ALL=sdf guix foo
  guile: warning: failed to install locale
  hint: Consider installing the `glibc-utf8-locales' [...]

User commands would print that warning, but more importantly, each
invocation of 'guix substitute' would print it, even though
'guix-daemon.service' explicitly chooses "en_US.utf8", which is in
'glibc-utf8-locales'.  This leads to confusion since users would keep
seeing this message unless/until they realize they also need to install
'glibc-utf8-locales' in root's profile.

This patch gets rid of "guile: warning: ..." for a guix-pulled 'guix'
command.

* guix/self.scm (specification->package): Add "gcc-toolchain".
(quiet-guile): New procedure.
(guix-command): Use it.
* gnu/packages/aux-files/guile-launcher.c: New file.
* Makefile.am (AUX_FILES): Add it.
2020-10-05 23:19:19 +02:00
Nicolas Goaziou
b3417123d1
gnu: rust-time-0.1: Update to 0.1.43.
* gnu/packages/crates-io.scm (rust-time-0.1): Update to 0.1.43.
2020-10-05 23:00:20 +02:00
Nicolas Goaziou
788cb3cb3b
gnu: rust-chrono-0.4: Update to 0.4.13.
* gnu/packages/crates-io.scm (rust-chrono-0.4): Update to 0.4.13.
2020-10-05 22:37:47 +02:00
Nicolas Goaziou
7121ec8c9d
gnu: rust-base64-0: Update to 0.12.3.
* gnu/packages/crates-io.scm (rust-base64-0): Update to 0.12.3.
2020-10-05 22:18:28 +02:00
Tobias Geerinckx-Rice
d6a0dbd6dc
gnu: swaks: Support IPv6.
* gnu/packages/mail.scm (swaks)[inputs]: Add perl-io-socket-inet6 and
perl-socket6.
2020-10-05 21:49:59 +02:00
Jan (janneke) Nieuwenhuizen
dc8b4c5448
gnu: guix: Update to 1.1.0-29.4e3ed9bad9.
* gnu/packages/package-management.scm (guix): Update to 1.1.0-29.4e3ed9bad9.
2020-10-05 20:25:26 +02:00
Julien Lepiller
4e3ed9bad9
services: gitolite: Install the rc file as gitolite's user.
* gnu/services/version-control.scm (gitolite-activation): Install the rc
file as gitolite's user.
2020-10-05 19:41:23 +02:00
Christopher Baines
c14714cbbf
services: guix: Add guix-build-coordinator-queue-builds-service-type.
* gnu/services/guix.scm (<guix-build-coordinator-queue-builds-configuration>):
New record type.
(guix-build-coordinator-queue-builds-configuration,
guix-build-coordinator-queue-builds-configuration?,
guix-build-coordinator-queue-builds-configuration-package,
guix-build-coordinator-queue-builds-configuration-user,
guix-build-coordinator-queue-builds-coordinator,
guix-build-coordinator-queue-builds-configuration-systems,
guix-build-coordinator-queue-builds-configuration-system-and-targets,
guix-build-coordinator-queue-builds-configuration-guix-data-service,
guix-build-coordinator-queue-builds-configuration-processed-commits-file,
guix-build-coordinator-queue-builds-shepherd-services,
guix-build-coordinator-queue-builds-activation,
guix-build-coordinator-queue-builds-account): New procedures.
(guix-build-coordinator-queue-builds-service-type): New variable.
* doc/guix.texi (Guix Services): Document it.
2020-10-05 18:10:48 +01:00
Christopher Baines
98ab323a24
services: guix: Add guix-build-coordinator-agent-service-type.
* gnu/services/guix.scm (<guix-build-coordinator-agent-configuration>): New
record type.
(guix-build-coordinator-agent-configuration,
guix-build-coordinator-agent-configuration?,
guix-build-coordinator-agent-configuration-package,
guix-build-coordinator-agent-configuration-user,
guix-build-coordinator-agent-configuration-coordinator,
guix-build-coordinator-agent-configuration-uuid),
guix-build-coordinator-agent-configuration-password,
guix-build-coordinator-agent-configuration-password-file,
guix-build-coordinator-agent-configuration-systems,
guix-build-coordinator-agent-configuration-max-parallel-builds,
guix-build-coordinator-agent-configuration-derivation-substitute-urls,
guix-build-coordinator-agent-configuration-non-derivation-substitute-urls,
guix-build-coordinator-agent-shepherd-services,
guix-build-coordinator-agent-activation,
guix-build-coordinator-agent-account): New procedures.
(guix-build-coordinator-agent-service-type): New variable.
* doc/guix.texi (Guix Services): Document it.
2020-10-05 18:10:48 +01:00
Christopher Baines
15955e9b54
services: guix: Add guix-build-coordinator-service-type.
* gnu/services/guix.scm (<guix-build-coordinator-configuration>): New record
type.
(guix-build-coordinator-configuration, guix-build-coordinator-configuration?,
guix-build-coordinator-configuration-package,
guix-build-coordinator-configuration-user,
guix-build-coordinator-configuration-group,
guix-build-coordinator-configuration-datastore-uri-string,
guix-build-coordinator-configuration-agent-communication-uri-string,
guix-build-coordinator-configuration-client-communication-uri-string,
guix-build-coordinator-configuration-allocation-strategy,
guix-build-coordinator-configuration-hooks,
guix-build-coordinator-configuration-guile,
make-guix-build-coordinator-start-script,
guix-build-coordinator-shepherd-services, guix-build-coordinator-activation,
guix-build-coordinator-account): New procedures.
(guix-build-coordinator-service-type): New variable.
* gnu/tests/guix.scm (%test-guix-build-coordinator): New variable.
* doc/guix.texi (Guix Services): Document it.
2020-10-05 18:10:48 +01:00
Christopher Baines
c2cb0e462c
gnu: Add guix-build-coordinator.
* gnu/packages/package-management.scm (guix-build-coordinator): New variable.
2020-10-05 18:10:45 +01:00
Christopher Baines
b452f1b1b3
gnu: guile-prometheus: Update to 0-1.8980f39.
This revision supports cross-compilation, so guile is added to the
native-inputs to enable this.

* gnu/packages/guile-xyz.scm (guile-prometheus): Update to 0-1.8980f39.
[native-inputs]: Add guile.
2020-10-05 17:35:37 +01:00
Tobias Geerinckx-Rice
2eb0585ab4
gnu: knot: Remove obsolete configure flag.
* gnu/packages/dns.scm (knot)[arguments]: Remove unused
‘--with-bash-completions’ configure flag.
2020-10-05 18:23:06 +02:00
Tobias Geerinckx-Rice
ca4143c730
gnu: knot: Snip more pregenerated nonsource.
ypbody.c is generated from ypbody.rl by update-parser.sh, both of which
are missing from the release tarball.  Rather than add another git file
to native-inputs, we now build from git and remove the generated files.

This follows up on commit 2b73e50c31, now
that everyone's finished building it.

* gnu/packages/dns.scm (knot)[source]: Use GIT-FETCH and GIT-FILE-NAME.
[arguments]: Add ‘--enable-fast-parser’ to #:configure-flags.
Invoke the in-tree update-parser.sh.
[native-inputs]: Remove separate update-parser.sh origin.
Add autoconf, automake, and libtool.
2020-10-05 18:22:50 +02:00
Tobias Geerinckx-Rice
2b73e50c31
gnu: knot: Build the zone parsers from Ragel source.
* gnu/packages/dns.scm (knot)[source]: Add snippet to remove upstream's
pregenerated ‘sources’
[arguments]: Add an ‘update-parser’ phase.
[native-inputs]: Add ragel and upstream update-parser.sh.
2020-10-05 17:24:14 +02:00
Pierre Neidhardt
3d09e02582
gnu: Add emacs-exwm-no-x-toolkit.
* gnu/packages/emacs-xyz.scm (emacs-exwm-no-x-toolkit): New variable.
2020-10-05 16:46:13 +02:00
Pierre Neidhardt
aafbd8f873
gnu: Add emacs-xelb-no-x-toolkit.
* gnu/packages/emacs-xyz.scm (emacs-xelb-no-x-toolkit): New variable.
2020-10-05 16:46:13 +02:00
Efraim Flashner
3699ed6350
gnu: astromance: Correctly link to game data.
Fixes <http://issues.guix.gnu.org/43797>.

* gnu/packages/games.scm (astromance)[arguments]: Adjust configure-flags
to point the DATADIR to a directory in the output.
2020-10-05 14:39:53 +03:00
Efraim Flashner
31c81fefff
gnu: libsigc++: Remove duplicate definition.
* gnu/packages/glib.scm (libsigc++-2): Remove variable.
(glibmm-2.64)[propagated-inputs]: Adjust accordingly.
* gnu/packages/gtk.scm (cairomm-1.13)[propagated-inputs]: Same.
2020-10-05 14:10:00 +03:00