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Author SHA1 Message Date
Nicolas Goaziou
4b1b6e859a
gnu: denemo: Use HTTPS home page URI. 
* gnu/packages/music.scm (denemo)[home-page]: Use HTTPS URI.

Change-Id: I07386a8153ed37041d270e52e482d0d1334e6ce5
 2024-08-26 22:09:03 +02:00
Nicolas Goaziou
44553da934
gnu: nauty: Fix build. 
* gnu/packages/maths.scm (nauty): Fix hash.

Change-Id: I4837baf2c43279705f0445fd08ad2578e431b8cc
 2024-08-26 22:04:11 +02:00
Nicolas Goaziou
690af9ec84
gnu: castor: Update to 0.9.0. 
* gnu/packages/web.scm (castor): Update to 0.9.0.
[arguments]<#:phases>: Relax Cargo version requirements.
<#:cargo-inputs>: Update rust-dirs to 3, rust-linkify to 0.7, and
rust-textwrap to 0.14.

Change-Id: I3508e35ab45315d394cb714e7ab3f7c508f2de14
 2024-08-26 22:00:46 +02:00
Nicolas Goaziou
271c1ca77e
gnu: Add rust-textwrap-0.14. 
* gnu/packages/crates-io.scm (rust-textwrap-0.14): New variable.

Change-Id: I434bfa3008b05170bc41f2f54c4a7ad90a85cbf2
 2024-08-26 22:00:46 +02:00
Nicolas Goaziou
1f089c3181
gnu: Add rust-linkify-0.7. 
* gnu/packages/crates-io.scm (rust-linkify-0.7): New variable.

Change-Id: I2bec446d5923766c060eb855f1dbec4a0f46f862
 2024-08-26 22:00:45 +02:00
Nicolas Goaziou
95fa95e2c7
gnu: naev: Update to 0.11.5. 
* gnu/packages/games.scm (naev): Update to 0.11.5.

Change-Id: I201190f949ddae53d892e26b93d8577149345d7f
 2024-08-26 22:00:45 +02:00
Tobias Geerinckx-Rice
028093d4e1
gnu: du-dust: Fix ZSH completion. 
* gnu/packages/admin.scm (du-dust)[arguments]: Fix typo.

Change-Id: Id139b5e213981e9cf9bfe63f661f75404ccf9b50
 2024-08-18 02:00:00 +02:00
Tobias Geerinckx-Rice
eb03211b1c
gnu: sugar-turtlepond-activity: Fix metadata. 
It was copied from sugar-commander-activity and never updated.

* gnu/packages/sugar.scm (sugar-turtlepond-activity)
[home-page, synopsis, description]: Describe sugar-turtlepond-activity.

Change-Id: I551dcabd200e4e5059cf3a47d5e7231fc79e1490
 2024-08-18 02:00:00 +02:00
Tobias Geerinckx-Rice
59184afcf6
gnu: hexchat: Update to 2.16.2. 
* gnu/packages/messaging.scm (hexchat): Update to 2.16.2.

Change-Id: If27085b95bc865aa8367b8dde6f1bcf8cb90e940
 2024-08-18 02:00:00 +02:00
Tobias Geerinckx-Rice
9b19309935
gnu: unrar-free: Update to 0.3.1. 
* gnu/packages/compression.scm (unrar-free): Update to 0.3.1.
[native-inputs, inputs]: Remove input labels.

Change-Id: Ifa0d54ca22819e8e65a8a3140c94bc9063905873
 2024-08-18 02:00:00 +02:00
Nicolas Goaziou
732dac4ce0
gnu: nauty: Update to 2.8.9. 
* gnu/packages/maths.scm (nauty): Update to 2.8.9.
[arguments]<#:phases>: Add a phase for fixing a test.

Change-Id: I854754ab372ef6ae1d5e13e14c0fc8a667177b4d
 2024-08-26 20:57:44 +02:00
Ricardo Wurmus
73ec6ef4c3
gnu: r-yulab-utils: Update to 0.1.7. 
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.7.
[propagated-inputs]: Remove r-httr2.

Change-Id: Ib21bdcb122d4999cce48b71604042d4833285081
 2024-08-26 20:31:17 +02:00
Ricardo Wurmus
2a2785c1a6
gnu: r-sungeo: Update to 1.3.0. 
* gnu/packages/cran.scm (r-sungeo): Update to 1.3.0.
[source]: Remove obsolete snippet.
[propagated-inputs]: Remove r-sp; add r-rmapshaper.
[native-inputs]: Add r-codetools.

Change-Id: Iceca0e28314f31e326b7d7f8d4a03a71b770025f
 2024-08-26 20:31:17 +02:00
Ricardo Wurmus
6b10c8c334
gnu: Add r-rmapshaper. 
* gnu/packages/cran.scm (r-rmapshaper): New variable.

Change-Id: Iaef97544772fa75c143a2c68206e11a1533e385b
 2024-08-26 20:31:17 +02:00
Ricardo Wurmus
a33c8146d4
gnu: Add r-geojsonsf. 
* gnu/packages/cran.scm (r-geojsonsf): New variable.

Change-Id: I7ffac98fd2e59d3b65d62d38f7e1930647c64e9c
 2024-08-26 20:31:17 +02:00
Ricardo Wurmus
60e9a86ecb
gnu: Add r-sfheaders. 
* gnu/packages/cran.scm (r-sfheaders): New variable.

Change-Id: Ia451593fb567ce9e88b5712a30f30ace2186edb2
 2024-08-26 20:31:17 +02:00
Ricardo Wurmus
61eea88dde
gnu: Add r-geometries. 
* gnu/packages/cran.scm (r-geometries): New variable.

Change-Id: I290a5cc2bda00859d27c7a91341acb20708c9abc
 2024-08-26 20:31:17 +02:00
Florian Pelz
cc4cb24ed5
teams: Remove Matt from their team due to inactivity. 
* etc/teams.scm (Matthew Trzcinski): Remove from the DOCUMENTATION team.

Change-Id: I6ab1f35086a2a1abc7c0436013efe223b44c7867
 2024-08-26 19:11:43 +02:00
Florian Pelz
4aaa0ea06f
doc: Remove duplicate search paths instructions. 
* doc/guix.texi (Invoking guix pull): Remove instructions
obsoleted by Binary Installation instructions.

Change-Id: I18274aa8bacd11de8ee72bd83c817f945468cc13
 2024-08-26 18:40:30 +02:00
jgart
4b011ee4ab
gnu: trealla: Update to 2.55.26. 
* gnu/packages/prolog.scm (trealla): Update to 2.55.26.

Change-Id: I2a2652d2415d007fabf8974212cd35686336905f
 2024-08-26 10:33:28 -05:00
jgart
714cbc84cf
gnu: trealla: Update to 2.55.25. 
* gnu/packages/prolog.scm (trealla): Update to 2.55.25.

Change-Id: I3c00edc6292c9e351ff514d3ca835236aa6c1d7e
 2024-08-26 10:33:28 -05:00
Ricardo Wurmus
e6e3f185ac
gnu: r-hmmcopy: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-hmmcopy): Update to 1.46.0.

Change-Id: I26c091fe4af549b01c98aac0a1fcdb058ff4ea71
 2024-08-26 14:14:07 +02:00
Spencer King
257375d36b
gnu: Add r-hmmcopy. 
* gnu/packages/bioconductor.scm (r-hmmcopy): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Iface547e865609427c356277edc904f3aec386d8
 2024-08-26 14:13:56 +02:00
Spencer King
7578bf8457
gnu: Add r-fuzzyjoin. 
* gnu/pacakges/cran.scm (r-fuzzyjoin): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I47fd35ac4759c8c9cceaac32a5b78c2306404903
 2024-08-26 12:24:59 +02:00
Ricardo Wurmus
b70de89f21
gnu: r-omnipathr: Update to 3.12.3. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.12.3.

Change-Id: I8ecd13d0d28003bb4ceb54b2c011fe6e8162df66
 2024-08-26 12:17:03 +02:00
Ricardo Wurmus
a7b2b67fbc
gnu: r-bgeedb: Update to 2.30.1. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.30.1.

Change-Id: I31f54552b1e12315657f5bd9b8dbef32f3a20066
 2024-08-26 12:17:03 +02:00
Ricardo Wurmus
77d37e4d9f
gnu: r-universalmotif: Update to 1.22.2. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.22.2.

Change-Id: I71e3f29a2ec4b15fb6758b4b972d17b5d1f502c8
 2024-08-26 12:17:03 +02:00
Ricardo Wurmus
a6d670f289
gnu: r-gdsfmt: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.40.1.

Change-Id: Ib9f585e2e2ad6ebc883a626da2138caffc909613
 2024-08-26 12:17:03 +02:00
Ricardo Wurmus
2474e1e1d7
gnu: r-xcms: Update to 4.2.3. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.3.

Change-Id: I17355573c0af40aa8b021da3e46a99a9709b411b
 2024-08-26 12:17:02 +02:00
Ricardo Wurmus
0c051d6520
gnu: r-clusterprofiler: Update to 4.12.5. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.12.5.

Change-Id: I05468212919db2e385cd4bd604891b7deca4110f
 2024-08-26 12:17:02 +02:00
Ricardo Wurmus
af299323fc
gnu: r-dose: Update to 3.30.4. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.4.
[propagated-inputs]: Remove r-hdo-db and r-yulab-utils.

Change-Id: Ia8ed1de853bd80ad4c482667c1b3547b113410ae
 2024-08-26 12:17:02 +02:00
Ricardo Wurmus
bd8e53d39e
gnu: r-gosemsim: Update to 2.30.2. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.30.2.
[propagated-inputs]: Add r-dbi, r-digest, r-httr2, and r-r-utils.

Change-Id: Idb915ec70b79f7464011e94256f68e940d63764f
 2024-08-26 12:17:02 +02:00
Ricardo Wurmus
66904a4109
gnu: r-ensembldb: Update to 2.28.1. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.28.1.

Change-Id: I8d03eb64092c04e5a05f5371e1d3589a2efcd4f1
 2024-08-26 12:17:02 +02:00
Ricardo Wurmus
018aa1323a
gnu: r-dmrcate: Update to 3.0.8. 
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.8.

Change-Id: I62421e4df317cf33c08bdd4f65221c255d4c2dc7
 2024-08-26 12:17:02 +02:00
King, Spencer
8059adada5
gnu: Add r-shinydisconnect. 
* gnu/packages/cran.scm (r-shinydisconnect): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Ibf90c8902b6e6e6c45b7bdb921f310f14ac6b803
 2024-08-26 11:39:39 +02:00
Ricardo Wurmus
a7db59b3fd
committer: Avoid // in xpath. 
When using // we assume that the package definition's S-expression is a
nesting of proper lists.  This is not guaranteed to be true, because a package
definition may contain alists.  By using an explicit path to the field of
interest we avoid recursion through all child nodes, thus avoiding child nodes
that are more likely to contain improper lists.

* etc/committer.scm.in (change-commit-message): Replace // with a path for the
PACKAGE symbol.

Change-Id: Idefaec9f5c3538484432e15a5865a68fc16e7369
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
a2e10e2878
gnu: r-desctools: Update to 0.99.56. 
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.56.

Change-Id: I00956252d699c06408818cced7c0d04e409c61c7
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
5af4d1537b
gnu: r-fdrtool: Update to 1.2.18. 
* gnu/packages/statistics.scm (r-fdrtool): Update to 1.2.18.

Change-Id: I199c8f82b86c1b8cc40f5dffd6c55f1ff4b727e0
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
304c1f8a93
gnu: r-rcppeigen: Update to 0.3.4.0.2. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.4.0.2.

Change-Id: I3f9ddfdeb14da7bd42bd6e46389da2ec11dc9940
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
ef2e52a922
gnu: r-minqa: Update to 1.2.8. 
* gnu/packages/statistics.scm (r-minqa): Update to 1.2.8.

Change-Id: Ibdf083085acf888be22d807ea77f2b4caf28de44
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
701ef945df
gnu: r-robust: Update to 0.7-5. 
* gnu/packages/statistics.scm (r-robust): Update to 0.7-5.

Change-Id: I14ceb59373e95295b2bb90712258571226f76205
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
803f295249
gnu: r-rrcov: Update to 1.7-6. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-6.

Change-Id: I21b0a480e840999d554dfce503a1e2e9137ea455
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
5efce1833e
gnu: r-pcapp: Update to 2.0-5. 
* gnu/packages/statistics.scm (r-pcapp): Update to 2.0-5.

Change-Id: I4b4ee28b6777e41fc200e8bad748444b7a34f0e8
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
5faeac1abb
gnu: r-robustbase: Update to 0.99-4. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-4.

Change-Id: I98104ac5700de8e50fcd8dcbcf0745845c809a9e
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
0c41f19ef6
gnu: r-fastica: Update to 1.2-5.1. 
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-5.1.

Change-Id: I379e9cb4f704e4c8187152762d65f034fd42bf5a
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
4c60a9d5c2
gnu: r-rann: Update to 2.6.2. 
* gnu/packages/statistics.scm (r-rann): Update to 2.6.2.

Change-Id: I4be5c6a4f63f5bd572d8b35637ee68c65c89a428
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
09a6994e38
gnu: r-sfsmisc: Update to 1.1-19. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-19.

Change-Id: Ie8c3682f4b0bf2cc98de7753b0cbed82f6303b48
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
01e18de27d
gnu: r-mvtnorm: Update to 1.2-6. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-6.

Change-Id: I49def37b078afadc47aaba571fd6ee6a2399f09c
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
bc99d00db3
gnu: r-rmarkdown: Update to 2.28. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.28.

Change-Id: Id76c14ee9db4e49ecafe5fe0f5e45c0212ad1333
 2024-08-26 11:39:38 +02:00
Ricardo Wurmus
1f312e5275
gnu: r-digest: Update to 0.6.37. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.37.

Change-Id: I9445786cc703d704c36cf6c56d06cb53f23505cc
 2024-08-26 11:39:38 +02:00