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Author SHA1 Message Date
Tobias Geerinckx-Rice
dc8450c178
gnu: r-curl: Update to 3.2. 
* gnu/packages/web.scm (r-curl): Update to 3.2.
 2018-03-29 17:36:57 +02:00
Tobias Geerinckx-Rice
f36685b058
gnu: bspwm: Update to 0.9.4. 
* gnu/packages/wm.scm (bspwm): Update to 0.9.4.
 2018-03-29 17:36:50 +02:00
Tobias Geerinckx-Rice
4bb5bdd963
gnu: rss-bridge: Update to 2018-03-11. 
* gnu/packages/web.scm (rss-bridge): Update to 2018-03-11.
 2018-03-29 17:36:39 +02:00
Roel Janssen
e086d2f68b
gnu: r-mutationalpatterns: Update to 1.4.3. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3;
  [propagated-inputs]: Remove r-gridextra.
 2018-03-29 15:50:44 +02:00
Roel Janssen
53e42694e5
gnu: kaiju: Update to 1.6.2. 
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2;
  [inputs]: Add zlib.
 2018-03-29 15:40:52 +02:00
Vasile Dumitrascu
d232e02ecf
gnu: Add duperemove. 
* gnu/packages/disk.scm (duperemove): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-29 15:17:35 +02:00
Ludovic Courtès
9c3f2c2e83
gnu: Add python-debug. 
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/python.scm (python-debug): New variable.
 2018-03-29 15:17:35 +02:00
Efraim Flashner
594e5d7368
gnu: nano: Update to 2.9.5. 
* gnu/packages/nano.scm (nano): Update to 2.9.5.
 2018-03-29 16:08:06 +03:00
Roel Janssen
c974008d91
gnu: Add r-idr. 
* gnu/packages/cran.scm (r-idr): New variable.
 2018-03-29 14:26:44 +02:00
Roel Janssen
996bed0608
gnu: Add r-amap. 
* gnu/packages/cran.scm (r-amap): New variable.
 2018-03-29 14:11:21 +02:00
Roel Janssen
6174db2b2c
gnu: Add r-venndiagram. 
* gnu/packages/cran.scm (r-venndiagram): New variable.
 2018-03-29 14:08:36 +02:00
Roel Janssen
ddbf2a98ba
gnu: Add r-pastecs. 
* gnu/packages/cran.scm (r-pastecs): New variable.
 2018-03-29 13:54:30 +02:00
Ricardo Wurmus
017bffc1a3
gnu: libusb4java: Adjust for building with libusb 1.0.22. 
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove
"-Werror" flag.
 2018-03-29 12:26:38 +02:00
Ricardo Wurmus
b0a4b6d957
gnu: libusb-for-axoloti: Update patch. 
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb
1.0.22.
 2018-03-29 12:26:38 +02:00
Chris Marusich
7874e9e047
gnu: Refactor boot-service-type and activation-service-type. 
* gnu/services.scm (boot-service-type) <compose>: Use the "identity"
  procedure instead of the "append" procedure because it more accurately
  reflects the intent, which is to simply return the single list of
  extensions to which fold-services applies the "compose" procedure.
  (activation-service-type) <compose>: Likewise.
 2018-03-29 08:38:49 +02:00
Chris Marusich
881c61d062
doc: Improve <service-type> documentation. 
* doc/guix.texi (Service Reference): Correct and clarify some statements
  regarding the "compose" and "extend" procedures of <service-type>.
 2018-03-29 07:29:49 +02:00
Chris Marusich
3cd4447f56
guix-install.sh: Explicitly set root's home directory. 
* etc/guix-install.sh (ROOT_HOME): New variable.
  (sys_create_store, sys_enable_guix_daemon, sys_authorize_build_farms):
  Use ROOT_HOME instead of ~root or the HOME environment variable.
* doc/guix.texi (Binary Installation): Instead of assuming that ~ and
  $HOME refer to root's directory simply because commands are being run
  as root, explicilty refer to it via ~root.

Fixes: <https://bugs.gnu.org/30728>
 2018-03-29 07:03:37 +02:00
Jelle Licht
ce353a548f
gnu: node: Update to 9.10.0. 
* gnu/packages/node.scm (node): Update to 9.10.0.
 2018-03-28 23:33:53 +02:00
Jelle Licht
b63af9b7c7
gnu: http-parser: Update to 2.8.0. 
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
 2018-03-28 23:33:43 +02:00
Marius Bakke
0a8985f395
gnu: xf86-video-ati: Update to 18.0.1. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
 2018-03-28 21:23:21 +02:00
Marius Bakke
4d967992d8
gnu: xf86-input-libinput: Update to 0.27.0. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0.
 2018-03-28 21:23:21 +02:00
Leo Famulari
935806b822
gnu: ntp: Update to 4.2.8p11 [security-fixes]. 
Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p11.
 2018-03-28 14:59:47 -04:00
Leo Famulari
590bdc149b
gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739]. 
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2o): New variable.
 2018-03-28 14:07:45 -04:00
Konrad Hinsen
1cde746700
gnu: Add r-parsedate. 
* gnu/packages/cran.scm (r-parsedate): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:18:20 +02:00
Maxim Cournoyer
3481c714c6
gnu: mu: Fix tests failures triggered by DST. 
* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:14:40 +02:00
Nadya Voronova
910deec66c
gnu: Add tcalc. 
* gnu/packages/maths.scm (tcalc): New variables.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:13:00 +02:00
Ludovic Courtès
c5e7bca248
build: Build (guix ci) and (guix scripts weather) when HAVE_GUILE_JSON. 
* Makefile.am (MODULES): Move guix/ci.scm and guix/scripts/weather.scm
to the HAVE_GUILE_JSON-guarded block.
 2018-03-28 17:06:33 +02:00
Ludovic Courtès
183445a6ed
weather: Report continuous integration stats. 
* guix/scripts/weather.scm (histogram, throughput, queued-subset): New
procedures.
(report-server-coverage): Report CI information.
* doc/guix.texi (Invoking guix weather): Document it.
 2018-03-28 16:17:06 +02:00
Ludovic Courtès
b3517f3f9f
Add (guix ci). 
* guix/ci.scm: New file.
* Makefile.am (MODULES): Add it.
 2018-03-28 16:17:06 +02:00
Arun Isaac
733d66a532
gnu: culmus: Rename to font-culmus. 
* gnu/packages/fonts.scm (culmus): Rename to...
(font-culmus): ...this. Re-indent.
 2018-03-28 14:58:34 +05:30
Arun Isaac
0328c514ed
gnu: culmus: Switch to font-build-system. 
* gnu/packages/fonts.scm (culmus): Switch to font-build-system.
[arguments]: Replace system* with invoke.
 2018-03-28 14:58:34 +05:30
Arun Isaac
15795e0723
gnu: font-linuxlibertine: Switch to font-build-system. 
* gnu/packages/fonts.scm (font-linuxlibertine): Switch to font-build-system.
[arguments]: Replace system* with invoke.
 2018-03-28 14:58:34 +05:30
Arun Isaac
803b9e8bf4
gnu: font-lato: Switch to font-build-system. 
* gnu/packages/fonts.scm (font-lato): Switch to font-build-system.
[source]: Use url-fetch/zipbomb.
 2018-03-28 14:58:33 +05:30
Mark H Weaver
6ef66d3f12
gnu: icecat: Add fix for CVE-2018-5148. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add the fix for CVE-2018-5148
from the upstream mozilla-esr52 repository.
 2018-03-27 21:08:15 -04:00
Leo Famulari
4d99a3215c
gnu: mupdf: Fix CVE-2018-{6544,1000051}. 
* gnu/packages/patches/mupdf-CVE-2018-1000051.patch,
gnu/packages/patches/mupdf-CVE-2018-6544.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
 2018-03-27 19:00:03 -04:00
Nicolas Goaziou
5bd43f7fd1
gnu: emacs-org, emacs-org-contrib: Update to 9.1.9. 
* gnu/packages/emacs.scm (emacs-org):
(emacs-org-contrib): Update to 20180327, a.k.a. release 9.1.9.
 2018-03-27 23:29:52 +02:00
ng0
78ba71b0b4
gnu: alpine: Update to 2.21.999. 
* gnu/packages/mail.scm (alpine): Update to 2.21.999.
[source]: Change to new upstream location.
[home-page]: Use new location.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-27 23:26:15 +02:00
Konrad Hinsen
6fcb90eebd
guix environment: load manifest files like "guix package" does 
* guix/scripts/environment.scm (options/resolve-packages): When loading
manifest files, use the same module environment as in "guix package".

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-27 23:26:15 +02:00
Ludovic Courtès
f7a5cf7a2d
nss: Remove '%compat' from the defaults. 
* gnu/system/nss.scm (%compat): Add comment.
(<name-service-switch>)[group, password, shadow]: Remove %COMPAT from
the default value.
 2018-03-27 23:26:15 +02:00
Tobias Geerinckx-Rice
75176f1b94
gnu: zstd: Update to 1.3.4. 
* gnu/packages/compression.scm (zstd): Update to 1.3.4.
 2018-03-27 22:08:57 +02:00
Tobias Geerinckx-Rice
15ff38f1b4
gnu: dovecot: Update to 2.3.1. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.1.
[arguments]: Rename ‘patch-other-shebangs’ phase to the more accurate
‘patch-other-file-names’... then patch more file names.
 2018-03-27 22:02:01 +02:00
Tobias Geerinckx-Rice
8960b2e64d
gnu: lyx: Use HTTPS home page. 
* gnu/packages/tex.scm (lyx)[home-page]: Use HTTPS.
 2018-03-27 22:00:14 +02:00
Leo Famulari
0fc3af7d88
gnu: openssl@1.1.0: Update to 1.1.0h [security fixes]. 
Fixes CVE-2017-3738 and CVE-2018-{0733,0739}.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0h.
 2018-03-27 15:45:41 -04:00
Ludovic Courtès
8980eea5ab
guix gc: Add '--derivers'. 
* guix/scripts/gc.scm (show-help, %options): Add '--derivers'.
(guix-gc): Handle 'list-derivers'.
* tests/guix-gc.sh: Add test.
* doc/guix.texi (Invoking guix gc): Document it.
 2018-03-27 14:51:44 +02:00
Ludovic Courtès
b06a70e05d
graph: Add "module" node type. 
* guix/scripts/graph.scm (module-from-package)
(source-module-dependencies*): New procedures.
(%module-node-type): New variable.
(%node-types): Add it.
* guix/modules.scm (source-module-dependencies): Export.
* tests/graph.scm ("module graph"): New test.
* doc/guix.texi (Invoking guix graph): Document it.
 2018-03-27 14:51:44 +02:00
Ludovic Courtès
de0021322d
gnu: Remove unnecessary import. 
* gnu/packages/guile.scm: Remove unnecessary import.
 2018-03-27 14:51:44 +02:00
Ludovic Courtès
82b71ac366
activation: Pass '-d HOME' to 'usermod'. 
Fixes a bug whereby changes to user home directories in the OS config
would never be effective.

Reported by Pierre Neidhardt <ambrevar@gmail.com>.

* gnu/build/activation.scm (modify-user): Pass '-d HOME'.
 2018-03-27 14:51:44 +02:00
Ludovic Courtès
7ddd418a1d
gnu: bootstrap: Remove unneeded import. 
* gnu/packages/bootstrap.scm: Remove unneeded (guix build utils) import.
 2018-03-27 14:51:44 +02:00
Timothy Sample
473cd27781
gnu: Remove Haskell packages provided by GHC. 
* gnu/packages/haskell.scm (ghc-array, ghc-binary, ghc-bytestring,
ghc-directory, ghc-haskeline, ghc-process, ghc-transformers,
ghc-transformers-0.4.2.0): Remove.
(ghc-tar)[inputs]: Remove ghc-array.
(ghc-hslogger)[inputs]: Remove ghc-directory.
* gnu/packages/version-control.scm (darcs)[inputs]: Remove ghc-array,
ghc-binary, and ghc-haskeline.
* gnu/packages/wm.scm (xmonad)[inputs]: Remove ghc-directory.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-03-27 11:24:20 +02:00
Tobias Geerinckx-Rice
75657922a5
gnu: supercollider: Update to 3.9.2. 
* gnu/packages/audio.scm (supercollider): Update to 3.9.2.
 2018-03-27 04:38:16 +02:00