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Author SHA1 Message Date
Ricardo Wurmus
dcf8c29277
gnu: r-gkmsvm: Update to 0.82.0. 
* gnu/packages/cran.scm (r-gkmsvm): Update to 0.82.0.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
a2c77eec88
gnu: r-lavaan: Update to 0.6-13. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-13.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
8b7de31e7a
gnu: r-rncl: Update to 0.8.7. 
* gnu/packages/cran.scm (r-rncl): Update to 0.8.7.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
b24219443d
gnu: r-fmsb: Update to 0.7.5. 
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.5.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
4e69d047c8
gnu: r-rgl: Update to 0.111.6. 
* gnu/packages/cran.scm (r-rgl): Update to 0.111.6.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
4f9b35d55c
gnu: r-ncdf4: Update to 1.21. 
* gnu/packages/cran.scm (r-ncdf4): Update to 1.21.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
1ce7003fb1
gnu: r-afex: Update to 1.2-1. 
* gnu/packages/cran.scm (r-afex): Update to 1.2-1.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
c63bbd4348
gnu: r-raster: Update to 3.6-13. 
* gnu/packages/cran.scm (r-raster): Update to 3.6-13.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
fd82a783eb
gnu: r-drtmle: Update to 1.1.2. 
* gnu/packages/cran.scm (r-drtmle): Update to 1.1.2.
 2023-01-09 22:30:50 +01:00
Ricardo Wurmus
8b322c5967
gnu: r-netrep: Update to 1.2.6. 
* gnu/packages/cran.scm (r-netrep): Update to 1.2.6.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
8d696f2728
gnu: r-precrec: Update to 0.14.1. 
* gnu/packages/cran.scm (r-precrec): Update to 0.14.1.
[propagated-inputs]: Add r-rlang.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
fa9f02dc9f
gnu: r-writexl: Update to 1.4.2. 
* gnu/packages/cran.scm (r-writexl): Update to 1.4.2.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
c7d61d2077
gnu: r-officer: Update to 0.5.1. 
* gnu/packages/cran.scm (r-officer): Update to 0.5.1.
[propagated-inputs]: Add r-openssl.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
18ea1e2085
gnu: r-billboarder: Update to 0.4.0. 
* gnu/packages/cran.scm (r-billboarder): Update to 0.4.0.
[native-inputs]: Update js-billboard to 3.6.3.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
3090a07f90
gnu: r-reticulate: Update to 1.27. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.27.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
0943ee5c9c
gnu: r-rastervis: Update to 0.51.5. 
* gnu/packages/cran.scm (r-rastervis): Update to 0.51.5.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
e758675070
gnu: r-heatmaply: Update to 1.4.2. 
* gnu/packages/cran.scm (r-heatmaply): Update to 1.4.2.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
407f58a9ad
gnu: r-expm: Update to 0.999-7. 
* gnu/packages/cran.scm (r-expm): Update to 0.999-7.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
a161409264
gnu: r-zlog: Update to 1.0.2. 
* gnu/packages/cran.scm (r-zlog): Update to 1.0.2.
 2023-01-09 22:30:49 +01:00
Ricardo Wurmus
f05c1a46ff
gnu: r-seriation: Update to 1.4.1. 
* gnu/packages/cran.scm (r-seriation): Update to 1.4.1.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
77895d9d6b
gnu: r-mitml: Update to 0.4-4. 
* gnu/packages/cran.scm (r-mitml): Update to 0.4-4.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
ba4117bf61
gnu: r-timedate: Update to 4022.108. 
* gnu/packages/cran.scm (r-timedate): Update to 4022.108.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
8c83db6a38
gnu: r-lava: Update to 1.7.1. 
* gnu/packages/cran.scm (r-lava): Update to 1.7.1.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
47184a91f1
gnu: r-rstpm2: Update to 1.5.9. 
* gnu/packages/cran.scm (r-rstpm2): Update to 1.5.9.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
15b612a328
gnu: r-htmlwidgets: Update to 1.6.1. 
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.6.1.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
b147c4a7f3
gnu: r-collections: Update to 0.3.7. 
* gnu/packages/cran.scm (r-collections): Update to 0.3.7.
 2023-01-09 22:30:48 +01:00
Ricardo Wurmus
b688e283dc
gnu: Add r-httr2. 
* gnu/packages/cran.scm (r-httr2): New variable.
 2023-01-09 22:30:42 +01:00
Florian Pelz
f62ac25ca3
news: Add 'de' translation. 
* etc/news.scm: Add German translation of entry about
linux-libre 4.9 removal.
 2023-01-09 18:48:12 +01:00
Greg Hogan
84f117f495
gnu: LLVM, Clang, libomp, lld: Update to 15.0.6. 
* gnu/packages/llvm.scm (llvm-15, clang-15, libomp-15, lld-15):
Update to 15.0.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-09 17:40:54 +01:00
Vivien Kraus
735e915bbd
gnu: Add minetest-mobs-monster. 
* gnu/packages/minetest.scm (minetest-mobs-monster): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-09 17:40:54 +01:00
Vivien Kraus
e8b90b1d5d
gnu: Add minetest-wielded-light. 
* gnu/packages/minetest.scm (minetest-wielded-light): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-09 17:40:54 +01:00
Ludovic Courtès
6c343d0d0f
read-print: Do not use extended notation when printing '1+', '1-', etc. 
* guix/read-print.scm (%special-non-extended-symbols): New variable.
(symbol->display-string): New procedure.
(pretty-print-with-comments): Use it in lieu of 'string->symbol'.
* tests/read-print.scm: Add test.
 2023-01-09 17:40:54 +01:00
Ludovic Courtès
407175a1d0
daemon: Improve error message for wrong hash sizes. 
* nix/libutil/hash.cc (parseHash): Show the hash algorithm name and
expected size in the error message.
* tests/derivations.scm ("fixed-output derivation, invalid hash size"):
New test.
 2023-01-09 17:40:54 +01:00
Ludovic Courtès
5d24e57a61
derivations: 'read-derivation' correctly handles case with empty hash. 
Reported by Stephen Paul Weber <singpolyma@singpolyma.net> at
<https://lists.gnu.org/archive/html/guix-devel/2023-01/msg00035.html>.

* guix/derivations.scm (read-derivation)[outputs->alist]: Treat the
empty hash case as non-fixed-output whether or not the hash algorithm is
the empty string, and preserve the hash algorithm in <derivation-output>.
* tests/derivations.scm ("'download' built-in builder, no fixed-output hash")
("fixed-output-derivation?, no hash", "read-derivation with hash = #f"): New tests.
 2023-01-09 17:40:53 +01:00
Ludovic Courtès
007e697560
substitute: Parse '_NIX_OPTIONS' once. 
* guix/scripts/substitute.scm (find-daemon-option): Arrange to call
'daemon-options' only once.
 2023-01-09 17:40:53 +01:00
Ludovic Courtès
47c1de22df
doc: cookbook: Add "Installing Guix on a Cluster" chapter. 
This is derived from the article at
<https://hpc.guix.info/blog/2017/11/installing-guix-on-a-cluster/>, with
clarifications and updates.

* doc/guix-cookbook.texi (Installing Guix on a Cluster): New chapter.
 2023-01-09 17:40:53 +01:00
Mathieu Othacehe
8b314efd50
services: base: Add environment support to guix-configuration. 
* gnu/services/base.scm (<guix-configuration>)[extra-env]: New field.
(guix-shepherd-service): Honor it.
* doc/guix.texi (Base Services): Document it.
 2023-01-09 17:15:28 +01:00
Ricardo Wurmus
de48bcee07
gnu: Add r-gg3d. 
* gnu/packages/bioinformatics.scm (r-gg3d): New variable.
 2023-01-09 14:50:26 +01:00
Andrew Tropin
35ecbb418c
home: environment-variables: Fix escaping. 
* gnu/home/services.scm (environment-variable-shell-definitions): Fix
escaping.
* tests/guix-home.sh: Add STRING_WITH_ESCAPES environment variable and test
its value.

Reported-by: elevnkb
 2023-01-09 12:22:56 +04:00
Andrew Tropin
2acce55a00
home: environment-variables: Return support for file-likes and gexps. 
* gnu/home/services.scm (environment-variable-shell-definitions): Add support
for file-likes and gexps.
* tests/guix-home.sh: Add SHELL environment variable and test its value.  Add
BUILDHOSTTIME environment variable.
 2023-01-09 12:03:32 +04:00
Marius Bakke
d0044216c9
gnu: ikiwiki: Remove input labels. 
* gnu/packages/web.scm (ikiwiki)[native-inputs, inputs]: Remove labels.
 2023-01-09 08:55:10 +01:00
Marius Bakke
37aeb85f45
gnu: ikiwiki: Add missing inputs. 
This fixes a regression from a1f9eba892 whereby
loading po4a as a library fails.

* gnu/packages/web.scm (ikiwiki)[inputs]: Add PERL-SYNTAX-KEYWORD-TRY and
PERL-XS-PARSE-KEYWORD.
 2023-01-09 08:55:09 +01:00
Marius Bakke
1efe7de096
gnu: python-afdko: Fix failing tests. 
* gnu/packages/patches/python-afdko-suppress-copyright-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fontutils.scm (python-afdko)[source](patches): New field.
 2023-01-09 08:55:09 +01:00
Ricardo Wurmus
2463e9f1fe
gnu: Remove java-ecj-3. 
* gnu/packages/java.scm (java-ecj-3): Remove variable.
 2023-01-09 00:50:29 +01:00
Ricardo Wurmus
9e14a7b4d2
gnu: ant-junit: Fix inheritance by using gexp. 
* gnu/packages/java.scm (ant-junit)[arguments]: Use gexp; also remove
trailing #T from build phases.
 2023-01-09 00:45:06 +01:00
Ricardo Wurmus
f05d228472
gnu: ant-apache-bcel: Fix inheritance by using gexp. 
* gnu/packages/java.scm (ant-apache-bcel)[arguments]: Use gexp; also remove
trailing #T from build phases.
 2023-01-09 00:44:26 +01:00
Ricardo Wurmus
882baf4b7d
gnu: java-cisd-jhdf5: Do not override default JDK. 
* gnu/packages/java.scm (java-cisd-jhdf5)[arguments]: Remove override for JDK.
 2023-01-09 00:40:19 +01:00
Ricardo Wurmus
a4eb83fee7
gnu: java-cisd-jhdf5: Remove trailing #T. 
* gnu/packages/java.scm (java-cisd-jhdf5)[source]: Remove trailing #T from
snippet.
[arguments]: Remove trailing #T from build phases.
 2023-01-09 00:39:43 +01:00
Ricardo Wurmus
3b62c2804c
gnu: java-ecj: Do not inherit from java-ecj-3. 
* gnu/packages/java.scm (java-ecj): Do not inherit fields from java-ecj-3.
[arguments]: Merge build phases 'fix-build.xml and 'fix-prop; remove trailing #T.
 2023-01-09 00:38:15 +01:00
Ricardo Wurmus
649ea550e7
gnu: Remove java-ecj-3.5. 
* gnu/packages/java.scm (java-ecj-3.5): Remove variable.
 2023-01-09 00:34:41 +01:00