Ricardo Wurmus
dcfd4d9c48
gnu: distrobox: Update to 1.5.0.2.
...
* gnu/packages/containers.scm (distrobox): Update to 1.5.0.2.
[arguments]: Do not patch files with extensions, such as a .pdf.
2023-10-13 17:45:56 +02:00
Afkhami, Navid
21b44bbc7c
gnu: Add r-mafh5-gnomad-v3-1-2-grch38.
...
* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-10-13 14:42:16 +02:00
Efraim Flashner
4ec6fd7817
doc: Document specification->package+output.
...
Reported by nutcase on IRC.
* doc/guix.texi (Using the Configuration System): Add a section about
using specification->package+output.
2023-10-13 11:48:43 +03:00
Vinicius Monego
08a1126428
gnu: gsequencer: Update to 6.1.3.
...
* gnu/packages/music.scm (gsequencer): Update to 6.1.3.
2023-10-12 21:48:47 -03:00
Vinicius Monego
844dd7dac7
gnu: python-metpy: Update to 1.5.1.
...
* gnu/packages/geo.scm (python-metpy): Update to 1.5.1.
2023-10-12 21:48:47 -03:00
Vinicius Monego
f1b7111f09
gnu: python-pint: Update to 0.22.
...
* gnu/packages/python-xyz.scm (python-pint): Update to 0.22.
[native-inputs]: Add python-uncertainties.
[propagated-inputs]: Add python-typing-extensions.
2023-10-12 21:48:39 -03:00
Vinicius Monego
016403f323
gnu: python-scrapy: Update to 2.11.0.
...
* gnu/packages/python-web.scm (python-scrapy): Update to 2.11.0.
2023-10-12 21:44:51 -03:00
Ludovic Courtès
5a3fb30653
services: cuirass: Add ‘log-expiry’ option for ‘remote-server’.
...
* gnu/services/cuirass.scm (<cuirass-remote-server-configuration>)[log-expiry]:
New field.
(cuirass-shepherd-service): Honor it.
* doc/guix.texi (Continuous Integration): Document it.
2023-10-12 22:14:34 +02:00
Ludovic Courtès
f0c929f1e6
gnu: cuirass: Use gexps.
...
* gnu/packages/ci.scm (cuirass)[arguments]: Rewrite as per ‘guix style
-S arguments’.
2023-10-12 22:14:34 +02:00
Ludovic Courtès
2588fb98f0
gnu: cuirass: Simplify ‘wrap-program’ phase.
...
* gnu/packages/ci.scm (cuirass)[arguments]: Add (srfi srfi-1) and (ice-9
match) to #:modules. Rewrite ‘wrap-program’ phase to iterate over
INPUTS and select the subset that actually provides Guile modules.
2023-10-12 22:14:34 +02:00
Wilko Meyer
06acda9715
gnu: Update my copyright.
...
* gnu/packages/linux.scm: Update copyright header.
Signed-off-by: Leo Famulari <leo@famulari.name>
2023-07-23 22:26:05 -04:00
Wilko Meyer
816c58bde1
gnu: linux-libre 4.14: Update to 4.14.327.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.327.
(linux-libre-4.14-pristine-source): Update hash.
Signed-off-by: Leo Famulari <leo@famulari.name>
2023-07-23 22:26:05 -04:00
Wilko Meyer
d38414047e
gnu: linux-libre 4.19: Update to 4.19.296.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.296.
(linux-libre-4.19-pristine-source): Update hash.
Signed-off-by: Leo Famulari <leo@famulari.name>
2023-07-23 22:26:05 -04:00
Wilko Meyer
44f32a407f
gnu: linux-libre 5.4: Update to 5.4.258.
...
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.258.
(linux-libre-5.4-pristine-source): Update hash.
Signed-off-by: Leo Famulari <leo@famulari.name>
2023-07-23 22:26:04 -04:00
Wilko Meyer
4e8a93d902
gnu: linux-libre 5.10: Update to 5.10.198.
...
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.198.
(linux-libre-5.10-pristine-source): Update hash.
Signed-off-by: Leo Famulari <leo@famulari.name>
2023-07-23 22:26:04 -04:00
Wilko Meyer
6e4e2a6aed
gnu: linux-libre 5.15: Update to 5.15.135.
...
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.135.
(linux-libre-5.15-pristine-source): Update hash.
Signed-off-by: Leo Famulari <leo@famulari.name>
2023-07-23 22:26:04 -04:00
Wilko Meyer
2346421b2a
gnu: linux-libre 6.1: Update to 6.1.57.
...
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.57.
(linux-libre-6.1-pristine-source): Update hash.
Signed-off-by: Leo Famulari <leo@famulari.name>
2023-07-23 22:26:04 -04:00
Wilko Meyer
1abfadab7c
gnu: linux-libre 6.5: Update to 6.5.7.
...
* gnu/packages/linux.scm (linux-libre-6.5-version): Update to 6.5.7.
(linux-libre-6.5-pristine-source): Update hash.
Signed-off-by: Leo Famulari <leo@famulari.name>
2023-07-23 22:26:00 -04:00
Ludovic Courtès
0c1d893b34
gnu: cuirass: Update to db6b633.
...
* gnu/packages/ci.scm (cuirass): Update to db6b633.
2023-10-12 18:53:07 +02:00
Ludovic Courtès
75bdf8e06a
shell: Take grafting into account when caching.
...
Fixes <https://issues.guix.gnu.org/64856 >.
* guix/scripts/shell.scm (profile-file-cache-key)
(profile-spec-cache-key): Take (%graft?) into account.
Reported-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-10-12 18:53:07 +02:00
Nguyễn Gia Phong
2812eb2e1b
gnu: Add senpai.
...
* gnu/packaging/messaging.scm (senpai): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-12 18:53:07 +02:00
Nguyễn Gia Phong
a798477db8
gnu: Add go-github-com-delthas-go-localeinfo.
...
gnu/packages/golang.scm (go-github-com-delthas-go-localeinfo): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-12 18:53:07 +02:00
Nguyễn Gia Phong
cf111ec0ba
gnu: Add go-github-com-delthas-go-libnp.
...
gnu/packages/golang.scm (go-github-com-delthas-go-libnp): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-12 18:53:06 +02:00
Nguyễn Gia Phong
26a31e63d3
gnu: go-github-com-godbus-dbus: Update to 5.1.0
...
gnu/packages/golang.scm (go-github-com-godbus-dbus): Update to 5.1.0.
Signed-off-by: Nguyễn Gia Phong <mcsinyx@disroot.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-12 18:53:06 +02:00
Ludovic Courtès
6a82ff6329
doc: Fix typo.
...
* doc/guix.texi (Derivations): Fix typo.
2023-10-12 18:53:06 +02:00
Ludovic Courtès
8b8ab17561
accounts: Fix typo in comment.
...
* gnu/build/accounts.scm (passwd->shadow): Fix typo in comment.
2023-10-12 18:53:06 +02:00
Efraim Flashner
daf38746df
gnu: ripgrep: Prepare for cross-compiling.
...
* gnu/packages/rust-apps.scm (ripgrep) [native-inputs]: Move pcre2 ...
[inputs]: ... to here.
2023-10-12 17:00:52 +03:00
Efraim Flashner
b802c104de
gnu: stfl: Fix cross-compiling.
...
* gnu/packages/ncurses.scm (stfl)[native-inputs]: Add ncurses.
2023-10-12 17:00:50 +03:00
Navid Afkhami
b418fdb191
gnu: Add r-complexupset.
...
* gnu/packages/cran.scm (r-complexupset): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-10-12 15:06:19 +02:00
Liliana Marie Prikler
1328c4cca5
gnu: glibc: Fix CVE-2023-4911.
...
* gnu/packages/patches/glibc-2.35-CVE-2023-4911.patch: New file.
* gnu/local.mk: Register it here.
* gnu/packages/base.scm (glibc/fixed): New variable.
(glibc): Use it as replacement.
2023-10-12 06:49:02 +02:00
John Kehayias
f62737bfee
gnu: curl/fixed: Fix version.
...
This is a followup to d6d706a58b
2023-10-11 23:12:15 -04:00
John Kehayias
d6d706a58b
gnu: curl/fixed: Update to 8.4.0 [security fixes].
...
Fixes CVE-2023-38545 and CVE-2023-38546. See
<https://curl.se/docs/CVE-2023-38545.html > and
<https://curl.se/docs/CVE-2023-38546.html > for details.
* gnu/packages/curl.scm (curl/fixed): Update to 8.4.0.
2023-10-11 22:08:14 -04:00
Leo Nikkilä
2610166c37
gnu: libcue: Update to 2.3.0 [security fixes].
...
Fixes CVE-2023-43641, see
<https://github.blog/2023-10-09-coordinated-disclosure-1-click-rce-on-gnome-cve-2023-43641/ >
for details.
* gnu/packages/cdrom.scm (libcue): Update to 2.3.0.
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2023-10-11 21:52:13 -04:00
Stefan Reichör
5c30ef17d6
gnu: python-pyte: Update to 0.8.1.
...
* gnu/packages/terminals.scm (python-pyte): Update to 0.8.1.
Co-authored-by: jgart <jgart@dismail.de>
2023-10-11 20:19:54 -05:00
jgart
ab0e0aa799
gnu: python-pyvirtualdisplay: Update to 3.0.
...
* gnu/packages/python-xyz.scm (python-pyvirtualdisplay): Update to 3.0.
2023-10-11 20:19:01 -05:00
Ludovic Courtès
75d322f76f
doc: cookbook: Add “Software Development” chapter.
...
* doc/guix-cookbook.texi (Software Development): New chapter.
2023-10-11 23:16:20 +02:00
Pierre-Evariste Dagand
20d9cfd851
gnu: Remove python-google-api-core-1 and its dependency python-google-auth-1
...
python-google-auth-1 doesn't self-test anymore. The tests depend on
`python-mock` (easy to fix) but also on an outdated version of
`python-cryptography`.
* gnu/packages/python-web.scm (python-google-auth-1)
(python-google-api-core-1): Remove.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-11 23:13:02 +02:00
Pierre-Evariste Dagand
83dc6c2c68
gnu: python-google-api-client: Update to 2.102.0.
...
* gnu/packages/python-web.scm (python-google-api-client): Update to 2.102.0
(python-google-auth-httplib2): Update to 0.1.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-11 23:12:56 +02:00
Pierre-Evariste Dagand
5b133876cc
gnu: Add python-google-auth-oauthlib.
...
* gnu/packages/python-web.scm (python-google-auth-oauthlib): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-11 23:11:58 +02:00
David Elsing
085bee4264
gnu: Add bliss.
...
* gnu/packages/maths.scm (bliss): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-11 19:10:03 +02:00
Alexey Abramov
670d985cab
services: static-networking: Add support for bonding.
...
* gnu/services/base.scm (<network-link>): Add mac-address field. Set
type field to #f by default, so it won't be mandatory. network-link
without a type will be used for existing interfaces.
(assert-network-link-mac-address, mac-address?): Add sanitizer. Allow
valid mac-address or #f.
(assert-network-link-type): Add sanitizer. Allow symbol or #f.
* gnu/services/base.scm (network-set-up/linux,
network-tear-down/linux): Adapt to new structure.
* doc/guix.texi (Networking Setup): Document it.
* gnu/tests/networking.scm (run-static-networking-advanced-test): New
variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-11 18:51:07 +02:00
Ricardo Wurmus
b4f2b681ad
gnu: Add r-chemmineob.
...
* gnu/packages/bioconductor.scm (r-chemmineob): New variable.
2023-10-11 15:44:06 +02:00
Sharlatan Hellseher
9ad9113fc2
gnu: indi: Update to 2.0.4.
...
* gnu/packages/astronomy.scm (indi-2.0): New variable.
(indi-1.9): New variable. Inherited from indi-2.0.
(indi): Set it to use indi-1.9 as default, as Stellarium and PHD2 are
still depended on 1.9 and fail with Indi 2.0+.
See: https://github.com/Stellarium/stellarium/issues/3038
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-11 12:11:42 +01:00
Sharlatan Hellseher
1592749dd1
gnu: python-tweakwcs: Update to 0.8.3.
...
* gnu/packages/astronomy.scm (python-tweakwcs): Update to 0.8.3.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-11 12:11:42 +01:00
Sharlatan Hellseher
cb5608e393
gnu: python-sunpy: Update to 5.0.1.
...
* gnu/packages/astronomy.scm (python-sunpy): Update to 5.0.1.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-11 12:11:42 +01:00
Sharlatan Hellseher
9e2f605b28
gnu: python-stpipe: Update to 0.5.1.
...
* gnu/packages/astronomy.scm (python-stpipe): Update to 0.5.1.
[arguments]{test-flags}: Disable on failing test.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-11 12:11:42 +01:00
Sharlatan Hellseher
46bdcee9c8
gnu: python-stdatamodels: Update packages style.
...
* gnu/packages/astronomy.scm (python-stdatamodels): Update indentation
to improve readability of the package.
[description]: Add TexInfo styling bits.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-11 12:11:42 +01:00
Sharlatan Hellseher
514aec4356
gnu: python-stdatamodels: Update to 1.8.3.
...
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.8.3.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-11 12:11:42 +01:00
Sharlatan Hellseher
eef6d037fa
gnu: python-stcal: Update package style.
...
* gnu/packages/astronomy.scm (python-stcal): Update indentation to
improve readability of the package.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-11 12:11:42 +01:00
Sharlatan Hellseher
bf6bab4e95
gnu: python-stcal: Update to 1.4.4.
...
* gnu/packages/astronomy.scm (python-stcal): Update to 1.4.4.
[arguments]{phases}: Add 'build-extensions phase.
[native-inputs]: Add python-cython.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-10-11 12:11:41 +01:00
