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Author SHA1 Message Date
Ricardo Wurmus
4abf226833
gnu: Add scregseg. 
* gnu/packages/bioinformatics.scm (scregseg): New variable.
 2021-08-31 23:11:06 +02:00
Ricardo Wurmus
a1ee212184
gnu: python-strawc: Propagate pybind11. 
* gnu/packages/bioinformatics.scm (python-strawc)[inputs]: Move pybind11 from
here...
[propagated-inputs]: ...to here.
 2021-08-31 23:11:05 +02:00
Ricardo Wurmus
55cb5a62a1
gnu: python-scanpy: Propagate sinfo. 
* gnu/packages/bioinformatics.scm (python-scanpy)[native-inputs]: Move
python-sinfo from here...
[propagated-inputs]: ...to here.
 2021-08-31 23:11:05 +02:00
Ricardo Wurmus
439f7c6887
gnu: python-jupyter-server: Use older pytest. 
* gnu/packages/jupyter.scm (python-jupyter-server)[native-inputs]: Replace
python-pytest-6 with python-pytest.
 2021-08-31 23:11:05 +02:00
Ricardo Wurmus
c4f500d032
gnu: python-anyio: Avoid failing tests. 
* gnu/packages/python-xyz.scm (python-anyio)[arguments]: Disable asyncio
plugin, and explicitly disable network tests.
 2021-08-31 23:11:05 +02:00
Ricardo Wurmus
73995969b1
gnu: Remove python-pytest-mock-3. 
* gnu/packages/check.scm (python-pytest-mock-3): Remove variable.
* gnu/packages/python-xyz.scm (python-anyio)[native-inputs]: Replace
python-pytest-mock-3 with python-pytest-mock.
 2021-08-31 23:11:05 +02:00
cage
1734853e92
gnu: telescope: Update to 0.5.1. 
* gnu/packages/web-browsers.scm (telescope): Update to 0.5.1.
  [native-inputs]: Add pkg-config.

Co-authored-by: Brice Waegeneire <brice@waegenei.re>
 2021-08-31 22:21:14 +02:00
Maxim Cournoyer
bb38cb990a
gnu: emacs-jenkinsfile-mode: Update to commit 65bf392. 
* gnu/packages/emacs-xyz.scm (emacs-jenkinsfile-mode): Update to commit
65bf392.
 2021-08-31 13:24:51 -04:00
Maxim Cournoyer
94056224ea
gnu: emacs-groovy-modes: Update to version 2.1. 
* gnu/packages/emacs-xyz.scm (emacs-groovy-modes): Update to version 2.1.
[arguments]: Enable tests, running the test suite via 'ert-runner'.
[native-inputs]: New field.
[propagated-inputs]: Add emacs-dash.
 2021-08-31 13:09:08 -04:00
Felix Gruber
3b2d3f1086
gnu: Add h2c. 
* gnu/packages/curl.scm (h2c): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-08-31 15:52:33 +02:00
Matthew James Kraai
cb68d199d0
gnu: ledger-agent: Remove usage from description. 
* gnu/packages/finance.scm (ledger-agent)[description]: Remove usage.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-08-31 15:52:33 +02:00
calum
9af83d1cf9
gnu: kakoune: Update to v2021.08.28 
* gnu/packages/text-editors.scm (kakoune): Update to v2021.08.28
[native-inputs]: Use gcc-10.
[inputs]: Remove ncurses dependancy.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
 2021-08-31 14:08:17 +02:00
Mathieu Othacehe
222f4661ed
publish: Do not render the narinfo "System" field. 
This has been discussed here: https://issues.guix.gnu.org/50040.

* guix/scripts/publish.scm (narinfo-string): Do not render the "System" field
that is expensive to compute and currently unused.
 2021-08-31 13:33:30 +02:00
Efraim Flashner
590be0a1ed
gnu: global: Add ctags support. 
* gnu/packages/code.scm (global)[inputs]: Add bash-minimal,
universal-ctags, python-pygments.
[arguments]: Add configure-flags to find ctags. Add phases to install
plugins and to wrap python script with PYTHONPATH.
 2021-08-31 13:10:11 +03:00
Leo Famulari
6fd69dd816
gnu: linux-libre 4.4: Update to 4.4.282. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.282.
(linux-libre-4.4-pristine-source): Update hash.
 2021-07-27 12:34:58 -04:00
Leo Famulari
341ac566c2
gnu: linux-libre 4.9: Update to 4.9.281. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.281.
(linux-libre-4.9-pristine-source): Update hash.
 2021-07-27 12:34:57 -04:00
Leo Famulari
0f903aa652
gnu: linux-libre 4.14: Update to 4.14.245. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.245.
(linux-libre-4.14-pristine-source): Update hash.
 2021-07-27 12:34:57 -04:00
Leo Famulari
cf7437b344
gnu: linux-libre 4.19: Update to 4.19.205. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.205.
(linux-libre-4.19-pristine-source): Update hash.
 2021-07-27 12:34:57 -04:00
Leo Famulari
c30d1989de
gnu: linux-libre 5.4: Update to 5.4.143. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.143.
(linux-libre-5.4-pristine-source): Update hash.
 2021-07-27 12:34:57 -04:00
Leo Famulari
ccc1ae559c
gnu: linux-libre 5.10: Update to 5.10.61. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.61.
(linux-libre-5.10-pristine-source): Update hash.
 2021-07-27 12:34:56 -04:00
Leo Famulari
34e56039fe
gnu: linux-libre: Update to 5.13.13. 
* gnu/packages/linux.scm (linux-libre-5.13-version): Update to 5.13.13.
(linux-libre-5.13-pristine-source, deblob-scripts-5.13): Update hash.
 2021-07-27 12:34:56 -04:00
Guix Together
26119328aa
gnu: harmonist: Update to 0.4.1. 
* gnu/packages/games.scm (harmonist): Update to 0.4.1.
[propagated-inputs]: Add go-github-com-gdamore-tcell-v2,
go-github-com-anaseto-gruid, and go-github-com-anaseto-gruid-tcell.

Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
Co-authored-by: Brice Waegeneire <brice@waegenei.re>
Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: Julien Lepiller <julien@lepiller.eu>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-08-30 15:45:17 -04:00
Guix Together
efb7565549
gnu: Add go-github-com-anaseto-gruid-tcell. 
* gnu/packages/games.scm (go-github-com-anaseto-gruid-tcell): New variable.

Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
Co-authored-by: Brice Waegeneire <brice@waegenei.re>
Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: Julien Lepiller <julien@lepiller.eu>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-08-30 15:32:40 -04:00
Guix Together
f48156dc9d
gnu: Add go-github-com-anaseto-gruid. 
* gnu/packages/games.scm (go-github-com-anaseto-gruid): New variable.

Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
Co-authored-by: Brice Waegeneire <brice@waegenei.re>
Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: Julien Lepiller <julien@lepiller.eu>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-08-30 15:16:09 -04:00
Guix Together
cc71a54e9f
gnu: Add go-github-com-gdamore-tcell-v2. 
* gnu/packages/golang.scm (go-github-com-gdamore-tcell-v2): New variable.

Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
Co-authored-by: Brice Waegeneire <brice@waegenei.re>
Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: Julien Lepiller <julien@lepiller.eu>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-08-30 14:55:51 -04:00
Maxim Cournoyer
ff80e775dc
gnu: go-github-com-gdamore-tcell: Correct license to Apache 2.0. 
* gnu/packages/golang.scm (go-github-com-gdamore-tcell)
[license]: Correct from Expat to Apache 2.0.
 2021-08-30 14:55:12 -04:00
Maxime Devos
a3bfe953d2
build/jami-service: Fix range ends in account-fingerprint-rx. 
This broke compilation of Guix with guile@3.0.2 with:

  In procedure make-regexp: Invalid range end

The fix is to replace [0-9A-f] with [0-9A-Fa-f].

* gnu/build/jami-service.scm (account-fingerprint-rx): Correct regexp.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-08-30 14:09:32 -04:00
Ricardo Wurmus
7712154ccb
gnu: Add python-coolbox. 
* gnu/packages/bioinformatics.scm (python-coolbox): New variable.
 2021-08-30 18:29:57 +02:00
Ricardo Wurmus
0d2371d215
gnu: Add python-voila. 
* gnu/packages/jupyter.scm (python-voila): New variable.
 2021-08-30 18:29:57 +02:00
Ricardo Wurmus
c9aee89abf
gnu: python-scikit-learn: Update to 0.24.2. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.24.2.
[arguments]: Remove trailing #t.
 2021-08-30 18:29:57 +02:00
Ricardo Wurmus
d3364b9c37
gnu: python-anndata: Fetch sources from git. 
* gnu/packages/python-xyz.scm (python-anndata)[source]: Fetch from git to
include test data.
[arguments]: Enable tests.  Do not let setuptools_scm guess the version.
 2021-08-30 18:29:57 +02:00
Ricardo Wurmus
b105655670
gnu: python-scanpy: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.8.1.
[arguments]: Bulid with flit; update list of broken tests.
[native-inputs]: Add python-flit and python-anndata:source.
 2021-08-30 18:29:57 +02:00
Ricardo Wurmus
105d8196be
gnu: Add python-jupyter-server. 
* gnu/packages/jupyter.scm (python-jupyter-server): New variable.
 2021-08-30 18:29:57 +02:00
Ricardo Wurmus
5766296a16
gnu: Add python-anyio. 
* gnu/packages/python-xyz.scm (python-anyio): New variable.
 2021-08-30 18:29:56 +02:00
Ricardo Wurmus
76b5a14ad5
gnu: Add python-pytest-mock-3. 
* gnu/packages/check.scm (python-pytest-mock-3): New variable.
 2021-08-30 18:29:56 +02:00
Ricardo Wurmus
c7d5e1a24c
gnu: Add python-pytest-tornasync. 
* gnu/packages/python-check.scm (python-pytest-tornasync): New variable.
 2021-08-30 18:29:56 +02:00
Ricardo Wurmus
43a6152432
gnu: Add python-pytest-console-scripts. 
* gnu/packages/python-check.scm (python-pytest-console-scripts): New variable.
 2021-08-30 18:29:56 +02:00
Ricardo Wurmus
d84ead8174
gnu: Add python-dna-features-viewer. 
* gnu/packages/bioinformatics.scm (python-dna-features-viewer): New variable.
 2021-08-30 18:29:56 +02:00
Ricardo Wurmus
abe1890a57
gnu: Add python-svgutils. 
* gnu/packages/python-xyz.scm (python-svgutils): New variable.
 2021-08-30 18:29:56 +02:00
Ricardo Wurmus
e85b35070c
gnu: Add python-pybbi. 
* gnu/packages/bioinformatics.scm (python-pybbi): New variable.
 2021-08-30 18:29:56 +02:00
Leo Prikler
b8926ca617
gnu: wine: Update to 6.16. 
* gnu/packages/wine.scm (wine): Update to 6.16.
 2021-08-30 18:20:07 +02:00
Denis 'GNUtoo' Carikli
7c3cefde5a
gnu: Add h-client. 
* gnu/packages/hardware.scm (h-client): New variable.

Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
 2021-08-30 18:20:07 +02:00
Leo Prikler
0732870631
gnu: wine: Update to 6.14. 
* gnu/packages/wine.scm (wine): Update to 6.14.
[#:phases]: Patch Makefile to correctly locate ntdll.so.
(wine64)[#:phases]: Likewise.
 2021-08-30 17:31:09 +02:00
Xinglu Chen
b12d856da9
gnu: Add ocaml-odoc-parser. 
* gnu/packages/ocaml.scm (ocaml-odoc-parser): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-08-30 14:40:18 +02:00
Xinglu Chen
0508622848
build-system: chicken: Add 'egg-uri' procedure. 
Once Chicken 6 gets released, we can just adjust the URL in the ‘egg-uri’
procedure, instead of having to change the URL for all the Chicken packages.
Making things a little more future-proof.

* guix/build-system/chicken.scm (egg-uri): New procedure.
* guix/import/egg.scm (egg-source-url): Adjust accordingly.
(egg->guix-package): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-08-30 14:38:50 +02:00
Ludovic Courtès
99160bc713
gnu: scrot: Update to 1.6. 
* gnu/packages/xdisorg.scm (scrot): Update to 1.6.
[native-inputs]: Add PKG-CONFIG.
[inputs]: Add IMLIB2.
 2021-08-30 14:30:53 +02:00
Ludovic Courtès
b4452ffe9b
build: Build (gnu packages rocm). 
This is a followup to df90cb1d5c.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/packages/rocm.scm.
 2021-08-30 14:27:30 +02:00
Ludovic Courtès
1037211d1b
services: hurd-vm: Use the new 'targets' field of <bootloader-configuration>. 
* gnu/services/virtualization.scm (%hurd-vm-operating-system): Use
'targets' instead of 'target' for the 'bootloader-configuration' field.
 2021-08-30 14:24:14 +02:00
Ludovic Courtès
baf4272df2
bootloader: Report location of the deprecated 'target' field. 
This is a followup to 2ca982ff41.

* gnu/bootloader.scm (warn-target-field-deprecation): New macro.
(<bootloader-configuration>)[target]: Add 'sanitize' property.
(%warn-target-field-deprecation): New procedure.
(bootloader-configuration-target): Define using 'define-deprecated'.
(bootloader-configuration-targets): Use
'%bootloader-configuration-target' rather than the deprecated one.
 2021-08-30 14:22:35 +02:00
Ludovic Courtès
8e8d85f722
build: Build (gnu system setuid). 
This is a followup to 45235e67e4.

* gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/system/setuid.scm.
 2021-08-30 12:26:03 +02:00