Commit graph

809 commits

Author SHA1 Message Date
Efraim Flashner
e3b861ce38
gnu: python-cython: Update to 0.26.
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 06:46:06 +03:00
Efraim Flashner
3837108e40
gnu: bcftools: Fix building on aarch64.
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file.
* gnu/packages/bioinformatics.scm (bcftools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-15 10:31:20 +03:00
Marius Bakke
f28fea1ca7
gnu: e2fsprogs: Update to 1.43.5.
* gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
[source]: Use patch.
2017-08-15 01:08:01 +02:00
Leo Famulari
15428168ea
gnu: cvs: Fix CVE-2017-12836.
* gnu/packages/patches/cvs-2017-12836.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (cvs)[source]: Use it.
2017-08-14 15:55:31 -04:00
Alex Vong
f152208b0d
gnu: qemu: Fix CVE-2017-{10664,10806,10911,11434}.
* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-13 18:28:27 +02:00
Marius Bakke
d5daf6fbe0
gnu: curl: Fix i686 test failure.
* gnu/packages/patches/curl-bounds-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/curl.scm (curl-7.55.0)[source]: Use it.
2017-08-13 16:46:41 +02:00
Peter Mikkelsen
06465d2ba4
gnu: Add mpd service.
* doc/guix.texi: Add documentation.
* gnu/services/audio.scm (<mpd-configuration>): New record type.
  (mpd-service-type): New service type.
* gnu/tests/audio.scm: New file.
* gnu/local.mk: Add new files.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-08-13 07:36:32 +01:00
Alex Vong
bfcdf88760
gnu: catdoc: Fix CVE-2017-11110.
* gnu/packages/patches/catdoc-CVE-2017-11110.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/textutils.scm (catdoc)[source]: Use it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-12 15:30:23 +02:00
Marius Bakke
c2f93e9c07
gnu: openjpeg: Update to 2.2.0 [security fixes].
In addition to the patches we already had (which are not mentioned in the
ChangeLog, but verified by following their respective GitHub issues) this
release also fixes CVE-2016-9112, CVE-2016-5139, CVE-2016-5152, CVE-2016-5158,
CVE-2016-5159, CVE-2016-1626 and CVE-2016-1628.

See <https://github.com/uclouvain/openjpeg/blob/v2.2.0/CHANGELOG.md> for details.

* gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch,
  gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg): Update to 2.2.0.
[source](patches): Remove.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Add phase to patch
hard-coded openjpeg-2.1 path.
2017-08-10 22:23:31 +02:00
Ricardo Wurmus
e57fffad90
gnu: Add igraph.
* gnu/packages/graph.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-08-09 14:47:47 +02:00
Ben Woodcroft
63755fcd65
gnu: ruby-puma: Update to 3.9.1.
* gnu/packages/ruby.scm (ruby-puma): Update to 3.9.1.
[source]: Remove patch.
[arguments]: Disable tests.
[native-inputs]: Remove field.
* gnu/packages/patches/ruby-puma-ignore-broken-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-08 09:31:18 +10:00
Tobias Geerinckx-Rice
d8af4f6dde
gnu: ntfs-3g: Update to 2017.3.23.
* gnu/packages/linux.scm (ntfs-3g): Update to 2017.3.23.
[source]: Remove patch.
* gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 02:01:34 +02:00
Efraim Flashner
403097d26d
gnu: Add motti.
* gnu/packages/motti.scm (motti): New variable.
2017-08-06 19:13:33 +03:00
Leo Famulari
01a61d7040
gnu: libtasn1: Fix CVE-2017-10790.
* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
2017-08-05 20:17:53 -04:00
Julien Lepiller
1cec346232
gnu: php: Update to 7.1.8.
* gnu/packages/patches/gd-CVE-2017-7890.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it
* gnu/packages/php.scm (php): Update to 7.1.8.
2017-08-04 18:58:33 +02:00
Tobias Geerinckx-Rice
f58be41761
gnu: fabric: Update to 1.13.2.
* gnu/packages/admin.scm (fabric): Update to 1.13.2.  Remove outdated comments.
[source]: Remove ‘patches’.
* gnu/packages/patches/fabric-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-04 03:46:49 +02:00
Efraim Flashner
edd08fb7ac
gnu: glibc@2.22: Fix security issues.
Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}.

* gnu/packages/base.scm (glibc@2.22)[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:35 +03:00
Efraim Flashner
a0ae64a334
gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.
* gnu/packages/base.scm (glibc@2.23)[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2016-3075.patch,
gnu/packages/patches/glibc-CVE-2016-3706.patch,
gnu/packages/patches/glibc-CVE-2016-4429.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-08-02 21:51:33 +03:00
Efraim Flashner
575e5e4e51
gnu: glibc@2.24: Fix CVE-2015-5180.
* gnu/packages/base.scm (glibc@2.24)[source]: Add patch.
* gnu/packages/patches/glibc-CVE-2015-5180.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:31 +03:00
Ludovic Courtès
04b6d6f7f7
gnu: guile-ssh: Update to 0.11.2.
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-ssh-channel-finalization.patch,
gnu/packages/patches/guile-ssh-double-free.patch,
gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-08-01 15:32:07 +02:00
Muriithi Frederick Muriuki
269504a797
gnu: python-pbr-minimal: Update to 3.0.1
* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1
[source]: Update hash and remove patch.
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 15:21:52 +03:00
Ludovic Courtès
58dce7bfb5
gnu: libgit2: Update to 0.26.0.
* gnu/packages/version-control.scm (libgit2): Update to 0.26.0.  Remove
"libgit2-use-after-free.patch".
* gnu/packages/patches/libgit2-use-after-free.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-31 15:23:05 +02:00
Christopher Baines
119fdd0d0e
services: Add memcached.
* gnu/services/databases.scm (memcached-service-type, %memcached-accounts):
  New variables.
  (<memcached-configuration>): New record type.
  (memcached-service-type): New procedures.
* gnu/tests/databases.scm: New file.
* doc/guix.texi (Database Services): Document the new memcached service.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add entry for tests/databases.scm.
2017-07-30 09:08:30 +01:00
Peter Mikkelsen
a4078acf4a
gnu: erlang: Fix man-pages search path of 'erl -man'.
* gnu/packages/patches/erlang-man-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/erlang.scm (erlang)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
Christopher Baines
730ed6ec8b
gnu: services: admin: Add tailon.
* gnu/services/admin.scm
  (<tailon-configuration>, <tailon-configuration-file>): New record types.
  (tailon-configuration-files-string, tailon-shepherd-service): New
  procedures.
  (%tailon-accounts, tailon-service-type: New variables.
* doc/guix.texi (Monitoring Services: Document the Tailon service.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/tests/admin.scm.
* gnu/tests/admin.scm: New file.
2017-07-29 12:45:03 +01:00
Ludovic Courtès
bcd757fdb4
gnu: mg: Move to (gnu packages text-editors).
* gnu/packages/mg.scm: Remove.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/text-editors.scm (mg): New variable.
2017-07-26 11:11:11 +02:00
Kei Kebreau
8ad40a69d1
gnu: evince: Update to 3.24.1.
* gnu/packages/gnome.scm (evince): Update to 3.24.1.
[source]: Remove obsolete patch.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-25 18:41:05 -04:00
Kei Kebreau
c7db7b86ce
gnu: perl-dbd-mysql: Fix CVE-2017-10788.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
2017-07-25 14:11:20 -04:00
Ludovic Courtès
726ecfeb3a
gnu: Add guile2.0-bytestructures.
* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
2017-07-25 17:46:17 +02:00
Christopher Baines
d61a894bfa
gnu: gnome: Add deja-dup.
* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
2017-07-24 20:05:49 +01:00
Ben Woodcroft
f3f68a442c
gnu: metabat: Update to 2.11.1.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 10:29:36 +10:00
Ben Woodcroft
0620387a59
gnu: bcftools: Update to 1.5.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag.  Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-23 10:29:36 +10:00
Ben Woodcroft
98593f9f51
gnu: bcftools: Update to 1.4.1.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch.  Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-23 10:29:35 +10:00
Ryan Moe
36378bd57e
gnu: quassel: Enable TLS.
* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:04:53 -04:00
Ricardo Wurmus
a68a83f015
gnu: Add openmolar.
* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:58 +02:00
Ricardo Wurmus
056468dc5f
gnu: Add cran module.
* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
2017-07-22 23:48:57 +02:00
Marius Bakke
aa51da7eef
gnu: Remove python-fake-factory leftovers.
This is a followup to c799eb2eb8.

* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-22 15:07:45 +02:00
Marius Bakke
2580c2f07f
gnu: python-pyopenssl: Update to 17.2.0.
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0.
[native-inputs]: Add PYTHON-FLAKY.
[source](patches): Remove.
2017-07-22 14:31:28 +02:00
Alex Vong
81c35029d4
gnu: heimdal: Fix CVE-2017-{6594,11103}.
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/kerberos.scm (heimdal)[source]: Use them.
2017-07-20 15:33:53 -04:00
Leo Famulari
8582e03ae5
gnu: Remove a left-over patch.
This is a followup to commit 426b0b898f.

* gnu/packages/patches/pcre-CVE-2017-7186.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-20 09:00:36 -04:00
Jonathan Brielmaier
05c8851695
gnu: Add libusb@0.1.
* gnu/packages/libusb.scm (libusb-0.1): New variable.
* gnu/packages/patches/libusb-0.1-disable-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-20 00:54:52 +02:00
Ben Woodcroft
ca8fb248de
gnu: Add patches missing from dist_patch_DATA.
Reported by Eric Bavier.

* gnu/local.mk (dist_patch_DATA): Add
gnu/packages/patches/hmmer-remove-cpu-specificity.patch,
gnu/packages/patches/jacal-fix-texinfo.patch,
gnu/packages/patches/python-pbr-fix-man-page-support.patch and
gnu/packages/patches/vsearch-unbundle-cityhash.patch.
2017-07-20 08:51:56 +10:00
ng0
8b5bf30804
gnu: Rename (gnu packages gforth) to (gnu packages forth).
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename gforth.scm to forth.scm.
* gnu/packages/gforth.scm: Rename file to forth.scm.
* gnu/packages/forth.scm: Renamed from gforth.scm.
2017-07-18 09:58:56 +02:00
Leo Famulari
4c4485f304
gnu: qemu: Fix CVE-2017-11334.
* gnu/packages/patches/qemu-CVE-2017-11334.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
2017-07-17 23:47:03 -04:00
Leo Famulari
144c8db9bd
gnu: chicken: Fix CVE-2017-11343.
* gnu/packages/patches/chicken-CVE-2017-11343.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
2017-07-17 23:47:00 -04:00
Andy Patterson
9b7ee28d57
gnu: Add Poly/ML.
* gnu/packages/sml.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-17 15:13:41 +02:00
Efraim Flashner
7ad2a4f1d5
gnu: supertuxkart: Fix build on aarch64.
* gnu/packages/games.scm (supertuxkart)[source]: Add patch.
* gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-17 15:29:56 +03:00
Ricardo Wurmus
5beecc320e
gnu: Add sooperlooper.
* gnu/packages/patches/sooperlooper-build-with-wx-30.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/music.scm (sooperlooper): New variable.
2017-07-17 14:01:47 +02:00
宋文武
59132b8000
gnu: Rename (gnu packages qemu) to (gnu packages virtualization).
* gnu/packages/qemu.scm: Rename this ...
* gnu/packages/virtualization.scm: ... to this.
* gnu/local.mk (GNU_SYSTEM_MODULES),
gnu/packages/bootloaders.scm, gnu/packages/debug.scm,
gnu/packages/gnome.scm, gnu/system/vm.scm,
gnu/tests/install.scm: Adjust accordingly.
2017-07-15 19:17:37 +08:00
Danny Milosavljevic
8d858010b3
bootloader: Add u-boot.
* gnu/bootloader/u-boot.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi: Document it.
2017-07-15 12:53:37 +02:00