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Author SHA1 Message Date
Roel Janssen
5bfa6e090d
gnu: r-pcamethods: Update to 1.68.0. 
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0.
 2017-04-28 11:05:40 +02:00
Roel Janssen
63bf2102cd
gnu: r-mzid: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0.
 2017-04-28 11:05:38 +02:00
Roel Janssen
60c08b2ff4
gnu: r-vsn: Update to 3.44.0. 
* gnu/packages/bioinformatics.scm (r-vsn):
[source]: Update to 3.44.0,
[propagated-inputs]: Add r-hexbin.
 2017-04-28 11:05:37 +02:00
Roel Janssen
bd3cc4cc52
gnu: r-affy: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0.
 2017-04-28 11:05:37 +02:00
Roel Janssen
71abcc4cbf
gnu: r-affyio: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0.
 2017-04-28 11:05:36 +02:00
Roel Janssen
e440ad6d4f
gnu: r-mzr: Update to 2.10.0. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.10.0.
 2017-04-28 11:05:35 +02:00
Roel Janssen
5b1337cc60
gnu: r-protgenerics: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.8.0.
 2017-04-28 11:05:33 +02:00
Roel Janssen
1d09d017db
gnu: r-sva: Update to 3.24.0. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.0.
 2017-04-28 11:05:20 +02:00
Roel Janssen
d52d2d623a
gnu: r-copywriter: Update to 2.8.0. 
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.0.
 2017-04-28 11:05:19 +02:00
Roel Janssen
7d72f2a803
gnu: r-chipseq: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.26.0.
 2017-04-28 11:05:18 +02:00
Roel Janssen
04049a5f2c
gnu: r-rhdf5: Update to 2.20.0. 
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.20.0.
 2017-04-28 11:05:18 +02:00
Roel Janssen
ff58a1af98
gnu: r-tximport: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.4.0.
 2017-04-28 11:05:16 +02:00
Roel Janssen
cf4ac4e465
gnu: r-mutationalpatterns: Update to 1.2.0. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns):
[source]: Update to 1.2.0,
[propagated-inputs]: Add r-bsgenome-hsapiens-1000genomes-hs37d5,
  r-bsgenome-hsapiens-ucsc-hg19.
 2017-04-28 11:05:13 +02:00
Roel Janssen
ccd2aade98
gnu: r-bamsignals: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.8.0.
 2017-04-28 11:05:12 +02:00
Roel Janssen
37631ddc28
gnu: r-rhtslib: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.8.0.
 2017-04-28 11:05:11 +02:00
Roel Janssen
8444f6067a
gnu: r-zlibbioc: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.22.0.
 2017-04-28 11:05:10 +02:00
Roel Janssen
a7b90ea990
gnu: r-motifrg: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.20.0.
 2017-04-28 11:05:09 +02:00
Roel Janssen
0fce7d9be5
gnu: r-seqlogo: Update to 1.42.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.42.0.
 2017-04-28 11:05:08 +02:00
Roel Janssen
3ae82c8dfe
gnu: r-genomation: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.8.0.
 2017-04-28 11:05:07 +02:00
Roel Janssen
08b9224d2d
gnu: r-seqpattern: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.8.0.
 2017-04-28 11:05:06 +02:00
Roel Janssen
5999359f56
gnu: r-impute: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.50.0.
 2017-04-28 11:05:06 +02:00
Roel Janssen
c54a702a28
gnu: r-bsgenome: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.44.0.
 2017-04-28 11:05:04 +02:00
Roel Janssen
6e70b6d63c
gnu: r-topgo: Update to 2.28.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.28.0.
 2017-04-28 11:05:03 +02:00
Roel Janssen
56373771b3
gnu: r-graph: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.54.0.
 2017-04-28 11:05:02 +02:00
Roel Janssen
5d0301a339
gnu: r-genomicfeatures: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.0.
 2017-04-28 11:05:01 +02:00
Roel Janssen
2ea7155b04
gnu: r-rtracklayer: Update to 1.36.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.0.
 2017-04-28 11:05:00 +02:00
Roel Janssen
5f16d1e47d
gnu: r-genomicalignments: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.0.
 2017-04-28 11:04:59 +02:00
Roel Janssen
d006ee31af
gnu: r-summarizedexperiment: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment):
[source]: Update to 1.6.0,
[propagated-inputs]: Add r-delayedarray.
 2017-04-28 11:04:58 +02:00
Roel Janssen
6bf5543be8
gnu: r-rsamtools: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.28.0.
 2017-04-28 11:04:57 +02:00
Roel Janssen
3ed41af6b5
gnu: r-biostrings: Update to 2.44.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.0.
 2017-04-28 11:04:56 +02:00
Roel Janssen
502da6ffc7
gnu: r-biocparallel: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.0.
 2017-04-28 11:04:55 +02:00
Roel Janssen
78e7a589c9
gnu: r-biomart: Update to 2.32.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.0.
 2017-04-28 11:04:47 +02:00
Roel Janssen
aafaab22d3
gnu: r-annotationdbi: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.0.
 2017-04-28 11:04:46 +02:00
Roel Janssen
b2fff403c8
gnu: r-biobase: Update to 2.36.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.0.
 2017-04-28 11:04:44 +02:00
Roel Janssen
1859712bef
gnu: r-genomicranges: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.0.
 2017-04-28 11:04:42 +02:00
Roel Janssen
17a02f5149
gnu: r-xvector: Update to 0.16.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.16.0.
 2017-04-28 11:04:42 +02:00
Roel Janssen
abf5a14e11
gnu: r-limma: Update to 3.32.0. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.0.
 2017-04-28 11:04:41 +02:00
Roel Janssen
d2d7af9832
gnu: r-variantannotation: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.0.
 2017-04-28 11:04:40 +02:00
Roel Janssen
00ffd55fa1
gnu: r-edger: Update to 3.18.0. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.18.0.
 2017-04-28 11:04:39 +02:00
Roel Janssen
38b99ccc57
gnu: r-genomeinfodb: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): [source] Update to 1.12.0,
[propagated-inputs]: Add r-genomeinfodbdata.
 2017-04-28 11:04:37 +02:00
Roel Janssen
7d9ab5d920
gnu: r-iranges: Update to 2.10.0. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.0.
 2017-04-28 11:04:36 +02:00
Roel Janssen
f1f380185b
gnu: r-s4vectors: Update to 0.14.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.0.
 2017-04-28 11:04:34 +02:00
Roel Janssen
9b02d49cb0
gnu: r-dnacopy: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.0.
 2017-04-28 11:04:33 +02:00
Roel Janssen
2e11beec48
gnu: r-bioccheck: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.12.0.
 2017-04-28 11:04:32 +02:00
Roel Janssen
3bef24c968
gnu: r-biocstyle: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (r-biocstyle): [source] Update to 2.4.0.
[propagated-inputs]: Add r-bookdown, r-knitr, r-rmarkdown, r-yaml.
 2017-04-28 11:04:31 +02:00
Roel Janssen
68eac34974
gnu: r-biocviews: Update to 1.44.0. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.44.0.
 2017-04-28 11:04:30 +02:00
Roel Janssen
3bef15286a
gnu: r-biocinstaller: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.26.0.
 2017-04-28 11:04:28 +02:00
Roel Janssen
28a5b3f2c6
gnu: r-biocgenerics: Update to 0.22.0. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.22.0.
 2017-04-28 11:04:26 +02:00
Roel Janssen
795a604526
gnu: r-grohmm: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.10.0.
 2017-04-28 11:04:25 +02:00
Roel Janssen
026dc7e4fc
gnu: r-systempiper: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.10.0.
 2017-04-28 11:04:24 +02:00
Roel Janssen
34c276f761
gnu: r-shortread: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.34.0.
 2017-04-28 11:04:22 +02:00
Roel Janssen
9511773423
gnu: r-gostats: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.42.0.
 2017-04-28 11:04:21 +02:00
Roel Janssen
ca0289aee7
gnu: r-category: Update to 2.42.0. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.0.
 2017-04-28 11:04:20 +02:00
Roel Janssen
c584a07ffd
gnu: r-gseabase: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.38.0.
 2017-04-28 11:04:19 +02:00
Roel Janssen
8ab6f241ea
gnu: r-rbgl: Update to 1.52.0. 
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.52.0.
 2017-04-28 11:04:16 +02:00
Roel Janssen
46972a4427
gnu: r-annotationforge: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.0.
 2017-04-28 11:04:12 +02:00
Roel Janssen
3ae74e451c
gnu: r-deseq2: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.0.
 2017-04-28 11:04:09 +02:00
Roel Janssen
b5bc3a3963
gnu: r-genefilter: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.58.0.
 2017-04-28 11:04:06 +02:00
Roel Janssen
97a50e4f34
gnu: r-geneplotter: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.54.0.
 2017-04-28 11:03:59 +02:00
Roel Janssen
dbab99b6d2
gnu: r-annotate: Update to 1.54.0. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.54.0.
 2017-04-28 11:03:47 +02:00
Roel Janssen
ffef27f3d2
gnu: Add r-genomeinfodbdata. 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): New variable.
 2017-04-28 10:17:06 +02:00
Roel Janssen
71e34e6b5b
gnu: Add r-delayedarray. 
* gnu/packages/bioinformatics.scm (r-delayedarray): New variable.
 2017-04-28 10:15:12 +02:00
Roel Janssen
2abfc5b827
gnu: Add r-bookdown. 
* gnu/packages/bioinformatics.scm (r-bookdown): New variable.
 2017-04-28 10:09:31 +02:00
Mark H Weaver
833361a483
gnu: linux-libre: Update to 4.10.13. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.13.
(%linux-libre-hash): Update hash.
 2017-04-28 00:42:46 -04:00
Mark H Weaver
f28851be95
gnu: linux-libre@4.9: Update to 4.9.25. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.25.
 2017-04-28 00:40:48 -04:00
Mark H Weaver
01c58cb3e9
gnu: linux-libre@4.4: Update to 4.4.64. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.64.
 2017-04-28 00:39:53 -04:00
Marius Bakke
244d4f4877
gnu: serf: Update to 1.3.9. 
* gnu/packages/patches/serf-comment-style-fix.patch,
gnu/packages/patches/serf-deflate-buckets-test-fix.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/web.scm (serf): Update to 1.3.9.
[source]: Remove patches.
 2017-04-27 17:58:43 +02:00
Marius Bakke
decb4c26fa
gnu: serf: Disable expired SSL tests. 
Fixes <https://bugs.gnu.org/26671>.

* gnu/packages/web.scm (serf)[arguments]<#:phases>: Add 'disable-broken-tests'.
 2017-04-27 17:58:43 +02:00
Marius Bakke
0d29f5aac5
gnu: kodi: Update to 18.0_alpha-3-749c61e. 
* gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-3-749c61e.
 2017-04-27 17:58:43 +02:00
Tobias Geerinckx-Rice
6373cddf42
gnu: tor: Update to 0.3.0.6. 
* gnu/packages/tor.scm (tor): Update to 0.3.0.6.
 2017-04-27 13:00:45 +02:00
Tobias Geerinckx-Rice
baca533370
gnu: simple-scan: Update to 3.24.1. 
* gnu/packages/gnome.scm (simple-scan): Update to 3.24.1.
 2017-04-27 09:37:32 +02:00
Arun Isaac
d39a84e80c
gnu: Add mdbtools. 
* gnu/packages/databases.scm (mdbtools): New variable.
 2017-04-27 10:15:51 +05:30
Leo Famulari
2018eea07b
Merge branch 'staging' 2017-04-27 00:33:06 -04:00
Efraim Flashner
be58ffa4aa
gnu: owncloud-client: Update to 2.3.1. 
* gnu/packages/sync.scm (owncloud-client): Update to 2.3.1.
[arguments]: Enable more tests.
 2017-04-26 22:04:01 +03:00
Vasile Dumitrascu
c9ba67a5f2
gnu: synergy: Update to 1.8.8. 
* gnu/packages/synergy.scm (synergy): Update to 1.8.8.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-04-27 00:03:20 +05:30
Petter
b63106089a
gnu: Add Xfce Notification Daemon. 
* gnu/packages/xfce.scm (xfce4-notifyd): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-04-26 16:32:24 +02:00
Danny Milosavljevic
2766f9e84f
gnu: Add volk. 
Fixes <http://bugs.gnu.org/26614>.

* gnu/packages/engineering.scm (volk): New variable.
 2017-04-26 15:59:09 +02:00
Ricardo Wurmus
fadae857b7
gnu: nss-pam-ldapd: Add Kerberos support. 
* gnu/packages/openldap.scm (nss-pam-ldapd)[inputs]: Add mit-krb5.
 2017-04-26 13:10:00 +02:00
Ricardo Wurmus
289a89801a
gnu: nss-pam-ldapd: Look for nslcd.conf in global /etc/ directory. 
* gnu/packages/openldap.scm (nss-pam-ldapd)[arguments]: Set
"--with-ldap-conf-file" to look for global configuration file; add build phase
to install example configuration file in the package output directory.
 2017-04-26 13:09:13 +02:00
Mathieu Othacehe
efba832751
gnu: ethtool: Update to 4.10. 
* gnu/packages/networking.scm (ethtool): Update to 4.10.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-04-26 11:42:16 +02:00
Marius Bakke
ce09f04ea0
gnu: ceph: Update to 12.0.2. 
* gnu/packages/storage.scm (ceph): Update to 12.0.2.
[arguments]<#:phases>: Disable new test.
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust.
 2017-04-26 11:39:33 +02:00
Marius Bakke
011b858b94
gnu: vte-ng: Update to 0.48.2.a. 
* gnu/packages/gnome.scm (vte-ng): Update to 0.48.2.a.
[native-inputs]: Change GPERF-3.0 to GPERF.
 2017-04-26 11:39:31 +02:00
Efraim Flashner
b27aacbfe2
gnu: Add gcompris-qt. 
* gnu/packages/education.scm (gcompris-qt): New variable.
 2017-04-26 12:04:26 +03:00
Efraim Flashner
4ad70ad8de
gnu: qtkeychain: Update to 0.8.0. 
* gnu/packages/qt.scm (qtkeychain): Update to 0.8.0.
 2017-04-26 09:42:13 +03:00
Efraim Flashner
cd48a54902
gnu: fuse: Patch conflicting headers with the kernel. 
* gnu/packages/linux.scm (fuse)[source]: Add patch.
* gnu/packages/patches/fuse-overlapping-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-04-26 08:45:24 +03:00
Christopher Allan Webber
d26ae96c3d
gnu: Add guile-sjson. 
* gnu/packages/guile.scm (guile-sjson): Add guile-sjson.
 2017-04-25 22:44:52 -05:00
Catonano
623fb4d162
gnu: Add freexl. 
* gnu/packages/xml.scm (freexl): New variable.
 2017-04-25 22:15:34 +02:00
Thomas Danckaert
b8ebbefee2
gnu: duplicity: Update to 0.7.12. 
* gnu/packages/backup.scm (duplicity): Update to 0.7.12.
 2017-04-25 21:04:04 +02:00
Arun Isaac
b5f57f60d5
Update name on email address for Mathieu Othacehe. 2017-04-26 00:11:17 +05:30
Leo Famulari
39d2d9a7ab
Merge branch 'master' into staging 2017-04-25 14:27:03 -04:00
Mathieu Othacehe
c2bae4a219
gnu: cmst: Update to 2017.03.18. 
* gnu/packages/connman.scm (cmst): Update to 2017.03.18.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-04-25 23:33:08 +05:30
Ricardo Wurmus
31c374e081
gnu: python-pysam: Disable tests. 
* gnu/packages/bioinformatics.scm (python-pysam): Disable tests.
 2017-04-25 14:05:59 +02:00
Efraim Flashner
43ba5dd4eb
gnu: mpv: Update to 0.25.0. 
* gnu/packages/video.scm (mpv): Update to 0.25.0.
[arguments]: Add explicit configure-flags to enable cdda, dvdread and dvdnav.
 2017-04-24 22:38:14 +03:00
Mathieu Othacehe
a2a15f6b21
gnu: speedtest-cli: Update to 1.0.5. 
* gnu/packages/networking.scm (speedtest-cli): Update to 1.0.5.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-04-24 21:25:14 +03:00
Ricardo Wurmus
b2955e224e
gnu: python-pysam: Fix tests, again. 
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nosetests
explicitly with a single process.
 2017-04-24 18:46:28 +02:00
Efraim Flashner
c136240efc
gnu: diamond: Enable building on all architectures. 
* gnu/packages/bioinformatics.scm (diamond)[supported-systems]: Remove
field.
 2017-04-24 19:30:10 +03:00
Efraim Flashner
f0ef7b47d3
gnu: libevent: Disable regress tests. 
* gnu/packages/libevent.scm (libevent)[arguments]: Disable the 'regress'
tests.
 2017-04-24 19:30:02 +03:00
Kei Kebreau
0611abff32
gnu: wmfire: Update source code for new GDK versions. 
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnustep.scm (wmfire)[source]: Add patch.
 2017-04-24 11:23:31 -04:00
Efraim Flashner
094f4b53af
gnu: unionfs-fuse: Enable tests. 
* gnu/packages/linux.scm (unionfs-fuse)[arguments]: Replace 'check phase.
[native-inputs]: Add python, python-pytest.
 2017-04-24 12:11:55 +03:00
Efraim Flashner
2f861edf5c
gnu: unionfs-fuse: Update to 2.0. 
* gnu/packages/linux.scm (unionfs-fuse): Update to 2.0.
[home-page]: Update to Github page.
 2017-04-24 12:10:32 +03:00
Efraim Flashner
092b7b3e69
gnu: wiredtiger: Enable building on aarch64-linux. 
* gnu/packages/databases.scm (wiredtiger)[supported-systems]: Add
aarch64-linux to supported-systems.
 2017-04-24 11:35:43 +03:00
Efraim Flashner
0aa872eadf
gnu: reptyr: Remove aarch64 from supported systems. 
* gnu/packages/screen.scm (reptyr)[supported-systems]: Remove
aarch64-linux from supported-systems.
 2017-04-24 11:35:39 +03:00
Efraim Flashner
8df1ee3f33
gnu: sdl-gfx: Enable building on all architectures. 
* gnu/packages/sdl.scm (sdl-gfx)[arguments]: On non-Intel architectures
disable mmx processor instructions.
[supported-systems]: Remove field.
 2017-04-24 11:35:35 +03:00
Efraim Flashner
b9af056408
gnu: libsmpeg: Set source file-name. 
* gnu/packages/video.scm (libsmpeg)[source]: Add file-name field.
 2017-04-24 10:30:21 +03:00
Leo Famulari
43acfcb2c7
libcroco: Fix CVE-2017-{7960,7961}. 
* gnu/packages/gnome.scm (libcroco)[replacement]: New field.
(libcroco/fixed): New variable.
* gnu/packages/patches/libcroco-CVE-2017-7960.patch,
gnu/packages/patches/libcroco-CVE-2017-7961.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2017-04-24 01:10:23 -04:00
Marius Bakke
8030679397
gnu: xorg-server@1.19.3: Correct hash. 
This hash got reset back to 1.19.2 when 1f49cd546e was merged (1524851f58).

* gnu/packages/xorg.scm (xorg-server-1.19.3)[source]: Update sha256 checksum.
 2017-04-24 00:55:28 +02:00
Vasile Dumitrascu
638787307e
gnu: Add emacs-google-maps. 
* gnu/packages/emacs.scm (emacs-google-maps): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-04-23 16:52:06 -04:00
Ricardo Wurmus
a71d769d1e
gnu: r-minimal: Update to 3.4.0. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.0.
[arguments]: Set timezone to UTC+1 in "set-timezone" phase to avoid regression
test failure.
 2017-04-23 22:48:19 +02:00
Ricardo Wurmus
d28fa5cc70
gnu: Add font-linuxlibertine. 
* gnu/packages/fonts.scm (font-linuxlibertine): New variable.
 2017-04-23 22:48:19 +02:00
Efraim Flashner
f3bd17281a
gnu: obs: Mark as supported only on Intel systems. 
* gnu/packages/video.scm (obs)[supported-systems]: New field.
[arguments]: Remove armhf and mips specific substitutions.
 2017-04-23 22:16:46 +03:00
Marius Bakke
769df80ded
gnu: nss: Further increase test timeouts on armhf. 
* gnu/packages/gnuzilla.scm (nss)[arguments]<#:phases>: Add a substitution
when target platform is armhf.
 2017-04-23 11:34:45 +02:00
Ludovic Courtès
fd6ec6bd99
gnu: coreutils@8.27: Do not apply 'coreutils-cut-huge-range-test.patch'. 
This patch is not needed in 8.27.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/base.scm (coreutils-8.27)[arguments]: New field.
 2017-04-23 01:24:57 +02:00
Daniel Pimentel
b59af0c0ce
gnu: Add aspell-dict-pt-br. 
* gnu/packages/aspell.scm (aspell-dict-pt-br): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-04-23 01:24:42 +02:00
Amirouche
946742e3e5
gnu: guile-bytestructures: Update to 91d042e 
* gnu/packages/guile.scm (guile-bytestructures): Update to 91d042e.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-04-23 01:00:39 +02:00
Leo Famulari
1524851f58
Merge branch 'master' into staging 2017-04-22 18:27:12 -04:00
Ludovic Courtès
ed9fb46b16
gnu: emacs-guix: Adjust to both 2.2 and 2.0. 
* gnu/packages/emacs.scm (emacs-guix)[arguments]: In #:configure-flags,
use 'find-files' to determine the --with-guix-site-dir argument.
 2017-04-23 00:03:17 +02:00
Ludovic Courtès
ab2419e56a
gnu: guix: Honor the effective Guile version. 
* gnu/packages/package-management.scm (guix-0.12.0)[arguments]: In
'wrap-program' phase, use the effective Guile version rather than "2.0".
Add #:modules argument.
 2017-04-23 00:03:17 +02:00
Ludovic Courtès
38f10b0c4e
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 25a4929.
 2017-04-23 00:03:17 +02:00
Ricardo Wurmus
3b74b7a283
gnu: r-caret: Update to 6.0-76. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-76.
[propagated-inputs]: Add r-lattice and r-nlme.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus
96071a6db2
gnu: r-lme4: Update to 1.1-13. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-13.
[propagated-inputs]: Add r-lattice and r-matrix.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus
0d5bc9382a
gnu: r-quantreg: Update to 5.33. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.33.
[propagated-inputs]: Add r-matrix.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus
f1a313dfde
gnu: r-compquadform: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-compquadform): Update to 1.4.3.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus
50d0b2c158
gnu: r-zoo: Update to 1.8-0. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus
1c21e2cf17
gnu: r-matrixstats: Update to 0.52.2. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.2.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus
c9d200e3af
gnu: r-r-rsp: Update to 0.41.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.41.0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus
96338a91d5
gnu: r-rtsne: Update to 0.13. 
* gnu/packages/statistics.scm (r-rtsne): Update to 0.13.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus
78a237f6b6
gnu: r-rcpparmadillo: Update to 0.7.800.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.800.2.0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus
050d41ca87
gnu: r-memoise: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-memoise): Update to 1.1.0.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus
aa745eb61f
gnu: r-markdown: Update to 0.8. 
* gnu/packages/statistics.scm (r-markdown): Update to 0.8.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus
958d0ee485
gnu: r-assertthat: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-assertthat): Update to 0.2.0.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus
2219e691bb
gnu: r-rpart: Update to 4.1-11. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-11.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus
b3360e09a7
gnu: r-mass: Update to 7.3-47. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-47.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus
4d76947e50
gnu: r-boot: Update to 1.3-19. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-19.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus
5ece8321af
gnu: r-curl: Update to 2.5. 
* gnu/packages/web.scm (r-curl): Update to 2.5.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus
1a84edeb0b
gnu: r-seqminer: Update to 5.9. 
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 5.9.
 2017-04-22 23:30:31 +02:00
Ricardo Wurmus
f8fe0e9db7
gnu: Add nss-pam-ldapd. 
* gnu/packages/openldap.scm (nss-pam-ldapd): New variable.
 2017-04-22 23:10:49 +02:00
Manolis Ragkousis
cc4faa35f8
gnu: Add the Hurd. 
* gnu/packages/hurd.scm (hurd): New variable.
* gnu/packages/patches/hurd-fix-eth-multiplexer-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-04-22 23:01:30 +03:00
Manolis Ragkousis
b005a37ac2
gnu: hurd: Add hurd-source-url procedure. 
* gnu/packages/hurd.scm (hurd-source-url): New procedure.
  (hurd-headers)[source]: Adjust accordingly.
 2017-04-22 23:01:24 +03:00
Danny Milosavljevic
71d0420202
system: Rename operating-system-parameters-file to operating-system-boot-parameters-file. 
* gnu/system.scm (operating-system-parameters-file): Rename to ...
(operating-system-boot-parameters-file): ... this.
(operating-system-directory-base-entries): Adapt call site.
 2017-04-22 20:54:43 +02:00
Danny Milosavljevic
af98d25a12
system: Rename operating-system-kernel-arguments to operating-system-user-kernel-arguments. 
* gnu/system.scm (operating-system-kernel-arguments): Rename to ...
(operating-system-user-kernel-arguments): ... this.
(<operating-system>): Adapt accordingly.
(operating-system-bootcfg): Adapt accordingly.
(operating-system-parameters-file): Adapt accordingly.
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Adapt
accordingly.
 2017-04-22 20:54:31 +02:00
Tobias Geerinckx-Rice
10b91ccaaa
gnu: weechat: Update to 1.7.1. 
* gnu/packages/irc.scm (weechat): Update to 1.7.1.
[source, home-page]: Use HTTPS.
 2017-04-22 20:35:50 +02:00
Tobias Geerinckx-Rice
d65db1d55d
gnu: weechat: Mention ‘IRC’. 
* gnu/packages/irc.scm (weechat)[description]: Mention the search term
‘IRC’, split into paragraphs, and other small tweaks.
 2017-04-22 20:35:50 +02:00
Kei Kebreau
a7086b154f
gnu: hyperrogue: Update to 9.4g. 
* gnu/packages/games.scm (hyperrogue): Update to 9.4g.
 2017-04-22 13:57:55 -04:00
Kei Kebreau
7d873e0c26
gnu: gnuplot: Update to 5.0.6. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.6.
 2017-04-22 13:33:09 -04:00
Marius Bakke
611924eb87
gnu: xf86-video-nouveau: Update to 1.0.15. 
* gnu/packages/xorg.scm (xf86-video-nouveau): Update to 1.0.15.
[home-page]: Use HTTPS.
 2017-04-22 12:13:36 +02:00
Marius Bakke
1f8c4c53db
gnu: emacs: Update to 25.2. 
* gnu/packages/emacs.scm (emacs, emacs-minimal, emacs-no-x,
emacs-no-x-toolkit): Update to 25.2.
 2017-04-22 12:13:36 +02:00
Marius Bakke
fa8a585e0f
gnu: xdg-utils: Update to 1.1.1. 
* gnu/packages/freedesktop.scm (xdg-utils): Update to 1.1.1.
[source]: Adjust file name.
[native-inputs]: Add DOCBOOK-XSL, DOCBOOK-XML-4.1.2, LIBXSLT, W3M and XMLTO.
[arguments]<#:phases>: Add 'patch-hardcoded-paths' and 'locate-catalog-files'
phases. New parameter.
[home-page]: Update to new home.
 2017-04-22 12:13:36 +02:00
Mark H Weaver
1efcd3d672
gnu: linux-libre: Update to 4.10.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.12.
(%linux-libre-hash): Update hash.
 2017-04-21 22:06:10 -04:00
Mark H Weaver
7b7770f205
gnu: linux-libre@4.9: Update to 4.9.24. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.24.
 2017-04-21 22:05:33 -04:00
Mark H Weaver
bd5424d487
gnu: linux-libre@4.4: Update to 4.4.63. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.63.
 2017-04-21 22:04:48 -04:00