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135952 commits

Author SHA1 Message Date
Ricardo Wurmus
e9dab24f53
gnu: r-oligo: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.68.0.

Change-Id: I13c81497f607deaea44d258513fe797147b33d1b
2024-05-08 12:53:28 +02:00
Ricardo Wurmus
21c3f68c29
gnu: r-oligoclasses: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.66.0.

Change-Id: Ic0ab82b4e1e6e400d6b78bc1fc743b72ffe8fb5a
2024-05-08 12:53:28 +02:00
Ricardo Wurmus
2832730fce
gnu: r-geneplotter: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.82.0.

Change-Id: I0fe3974fc5db878ca316eec339e29d669d80cfa3
2024-05-08 12:53:28 +02:00
Ricardo Wurmus
b877e13cb0
gnu: r-zellkonverter: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.14.0.

Change-Id: Id3ae955b285c16c11f3e8ffb13d46f73c75c8d28
2024-05-08 12:53:28 +02:00
Ricardo Wurmus
c0f07c73fd
gnu: r-zlibbioc: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.50.0.

Change-Id: I9328dc1aac9f1a9818eb2d3db535443357fbdb96
2024-05-08 12:53:28 +02:00
Ricardo Wurmus
61ff644dbc
gnu: r-xvector: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.44.0.

Change-Id: I0fc1b77f6713dd21c880a8dc3560538f3dd64f2a
2024-05-08 12:53:28 +02:00
Ricardo Wurmus
09d56eba55
gnu: r-xmapbridge: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.62.0.

Change-Id: I47d9cd20a6a11ecd83d51737766ea528f27cea5b
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
e883e06151
gnu: r-xina: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-xina): Update to 1.22.0.

Change-Id: I6c6678b36e138132be262a79fd026e5c3b5a8025
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
b1d1af4ae6
gnu: r-vsn: Update to 3.72.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.72.0.

Change-Id: I0ffe22d61eb7e8395873701dc993e1bb4da01ea0
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
017232eb6c
gnu: r-variantannotation: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.50.0.

Change-Id: I9cc7974bbf682e85b8813f10e5351bd97c6541fe
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
6e8ce08d51
gnu: r-tximport: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.32.0.

Change-Id: Ie592907eda6aeaecedacfab5ab46b6083c079c10
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
bf1b1e3a1c
gnu: r-topgo: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.56.0.

Change-Id: I092b5d3592e05fef80b04866fac8a40ccea258fd
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
16a794f8ed
gnu: r-systempiper: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.10.0.

Change-Id: I5a58172e4a622d132430a6332d95c1547f60a178
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
d739f83b6b
gnu: r-sva: Update to 3.52.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.52.0.

Change-Id: Ib4243cc0d61a98703e2abf35fafa761a1c465f21
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
118aff2e0e
gnu: r-survcomp: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-survcomp): Update to 1.54.0.

Change-Id: I4d4e7523d555484d1fef46622d968c4ea4206fa7
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
65973abaf1
gnu: r-summarizedexperiment: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.34.0.

Change-Id: Ia321ab98a3ef414687556e5c81f82891fce8ff27
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
e6522075ec
gnu: r-structuralvariantannotation: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.20.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If835644b8f25b491953270d4de43bc52295c6a1d
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
7f5b5e9b11
gnu: r-structstrings: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-structstrings): Update to 1.20.0.

Change-Id: Idd71d968a31bb85fac334a635c0084bfadb569c3
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
ba92e738d3
gnu: r-stringdb: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.16.0.

Change-Id: I8ab6ff63f94f4d6e9c8b9bfa7b8017030a55bfef
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
e13e3edd17
gnu: r-stager: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.26.0.

Change-Id: Ie5eab32c083443149be319d92d8025aea9b00fb4
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
11d71e1831
gnu: r-spectra: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.14.0.

Change-Id: I473834e66f7d6a2721a71bafe17b1b3797f469c0
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
a23a4ca88e
gnu: r-slingshot: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.12.0.

Change-Id: Ic7cdd2989054686a0e204c1a7c5f824241395506
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
30ddcaad69
gnu: r-scds: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-scds): Update to 1.20.0.

Change-Id: I1b2a63d6110e84f2afa0814e63d7d51ce7b60cf9
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
f8940f24c6
gnu: r-trnadbimport: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-trnadbimport): Update to 1.22.0.

Change-Id: I0414b8517d6fb685b031b0f4db9a1d12887f1b96
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
0f1d300f88
gnu: r-trna: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-trna): Update to 1.22.0.

Change-Id: I8963719a1115e1c5ee4994e41a1aa54bc22fcaad
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
cda28c3a25
gnu: r-trajectoryutils: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.12.0.

Change-Id: I34fe4ddcfefbc5e630b980a1f5efa95651b57d4d
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
13510c9f98
gnu: r-transcriptr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.32.0.

Change-Id: Ia667543961c1512ada20fe9c52e3e7ed09d0f65e
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
014cb61aec
gnu: r-trackviewer: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.40.0.
[propagated-inputs]: Remove r-graph and r-rgraphviz; add r-igraph and r-txdbmaker.

Change-Id: I90fbb82ff3261d78d5a34398319032f18068fe6a
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
e5db1eda48
gnu: r-toast: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-toast): Update to 1.18.0.

Change-Id: Id9859f9e2cdb7ca883851dfe6898d1303a352a38
2024-05-08 12:53:27 +02:00
Ricardo Wurmus
aba6649da3
gnu: r-tkwidgets: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-tkwidgets): Update to 1.82.0.

Change-Id: I8651a8b1266c181aac615895c9f39380f0351057
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
643ef0df61
gnu: r-tcgautils: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.24.0.

Change-Id: Ie461dd5c2e2799c6cd32cc5e88a13337bcf82096
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
d77e1f3c10
gnu: r-singscore: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-singscore): Update to 1.24.0.

Change-Id: I8e7b85d05a7e9f7d4e724dc5de30cdab5dc23e57
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
6f901f6078
gnu: r-simplifyenrichment: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.14.0.

Change-Id: Ie857137bb1320f3720b005a3f85b9af5b91f921e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
1140cfd70c
gnu: r-sictools: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-sictools): Update to 1.34.0.

Change-Id: I99b7c71edd1eb82ee8b2430de49559713b7b190a
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
04949bab4a
gnu: r-shortread: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.62.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If2d4d238f239f2acda2f8bffc29851dbfa5e6242
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
3919266295
gnu: r-shinymethyl: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.40.0.

Change-Id: Ifb3c81587b465500bc09e05da2d3dc8f0ca360b5
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
19da768a9f
gnu: r-sesame: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.22.0.

Change-Id: I0efac0bf86ee98a8e75fc27c4deebeeb3b285501
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
18b93942a1
gnu: r-seqpattern: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.36.0.

Change-Id: I34fdeb5b2c758a61d3c51b661c3f368962041a7b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
28ec187b57
gnu: r-seqlogo: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.70.0.

Change-Id: I201297ab8f83e29de02014ec4e714ea9660a9f7d
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
c85aa7b104
gnu: r-seqarray: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.44.0.

Change-Id: I056ebc6080d3a2d82c2f1a2ffcc45d5c6bfdbb9e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
a1b6df6cf7
gnu: r-scry: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.16.0.

Change-Id: I47c4da2763a994a1763eca403597b41b4514852e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
5ac1127f4a
gnu: r-scrnaseq: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-scrnaseq): Update to 2.18.0.
[propagated-inputs]: Add r-alabaster-base, r-alabaster-matrix, r-alabaster-sce, r-dbi,
r-delayedarray, r-gypsum, r-jsonlite, r-matrix, r-rsqlite, and
r-sparsearray.

Change-Id: Ib72ccf01386df1bc464bea2922e4539968b97805
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
d4094eaef4
gnu: r-screpertoire: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.0.0.
[propagated-inputs]: Remove r-doparallel, r-powertcr, and r-vegan; add r-cubature,
r-evmix, r-ggdendro, r-hash, r-inext, r-quantreg, r-rcpp, r-rjson,
r-s4vectors, r-truncdist, and r-vgam.

Change-Id: I0d2647f9d2cee66503e0d76f4ff913fd5662971c
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
0ddc2665e0
gnu: r-scmap: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.26.0.

Change-Id: I8ca259c16274a11e5767e3d652394144418cb91b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
23dd82f6d0
gnu: r-scdblfinder: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.18.0.

Change-Id: Id0180b229c58d25c67ab45725714a07ced6a4f69
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
b8959272c5
gnu: r-scannotatr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.10.0.

Change-Id: I3f13f54e33f1d615ef234853c425894239031399
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
51093471ce
gnu: r-saturn: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.12.0.

Change-Id: I187d36aa6b0a29a12c738e4e1c36c12905d3bbd9
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
dae9e19df4
gnu: r-rtracklayer: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.64.0.
[inputs]: Add curl.
[propagated-inputs]: Remove r-rcurl; add r-curl and r-httr.

Change-Id: I1d5f33e9feb54fa0ce6e8d7b98fca461e8480c06
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
43cced246b
gnu: r-rtcgatoolbox: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.34.0.

Change-Id: I4d1c6d5f1d6dffe4cd5acf074c86eae1e008a44b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus
92ed002d7f
gnu: r-rtcga: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.34.0.

Change-Id: I84fa90b4e055fbce4415f25d9638b7579c73eda8
2024-05-08 12:53:26 +02:00