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Author SHA1 Message Date
Jelle Licht
aa0dbc3170
gnu: node-buffer-crc32: Ignore development dependencies. 
* gnu/packages/node-xyz.scm (node-acorn)[arguments]<phases>: Explicitly patch
out development dependencies.  Re-enable configure phase.
 2023-05-06 13:53:21 +02:00
Jelle Licht
14821580f5
gnu: node-acorn: Fix broken transpilation. 
* gnu/packages/node-xyz.scm (node-acorn)[native-inputs]: Add `esbuild'.
[arguments]<phases>: Replace build phase by custom `esbuild' invocations.
 2023-05-06 13:53:21 +02:00
Jelle Licht
7a44c34f4a
gnu: node-acorn: Remove lifecycle script. 
* gnu/packages/node-xyz.scm (node-acorn)[arguments]<modules>: New argument.
<phases>: Patch out unused 'prepare' script that breaks dependents.
 2023-05-06 13:53:21 +02:00
Jelle Licht
00b2e16823
gnu: node-acorn: Disable tests. 
* gnu/packages/node-xyz.scm (node-acorn): Explicitly disable tests.
 2023-05-06 13:53:21 +02:00
Jelle Licht
d8ce5e3297
build-system: node: Use --install-links' with npm install'. 
Later versions of npm need to explicitly install a copy of local dependencies,
instead of only a symlink.

* guix/build/node-build-system.scm (configure): Add `--install-links' to npm
install invocation.
(install): Ditto.
 2023-05-06 13:53:21 +02:00
Christopher Baines
c229937c6a
services: guix-build-coordinator: Simpify service startup. 
Take advantage of changes in the build coordinator to reduce the complexity of
the service startup script.

* gnu/services/guix.scm (make-guix-build-coordinator-start-script): Remove the
metrics registry and datastore.
 2023-05-06 12:51:51 +01:00
Christopher Baines
7b1b43a27a
gnu: guix-build-coordinator: Update to 0-80.d030cac. 
* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-80.d030cac.
 2023-05-06 12:51:51 +01:00
Christopher Baines
99bcf7ce98
gnu: guix-data-service: Update to 0.0.1-40.3734a85 
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-40.3734a85.
 2023-05-06 12:51:51 +01:00
宋文武
7368020bef
gnu: rizin: Fix build. 
* gnu/packages/engineering.scm (rizin)[arguments]: Skip failing tests.
 2023-05-06 18:49:13 +08:00
Timotej Lazar
64086a4fa4
gnu: mupdf: Simplify snippet. 
* gnu/packages/pdf.scm (mupdf)[source]: Simplify code to remove unused
thirdparty libs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-05-06 00:01:56 +02:00
Timotej Lazar
c106baed62
gnu: mupdf: Update to 1.22.0. 
* gnu/packages/pdf.scm (mupdf): Update to 1.22.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-05-06 00:01:50 +02:00
Sergey Trofimov
71a438dcba
gnu: git-crypt: Fix build issues on OpenSSL 3. 
* gnu/packages/version-control.scm (git-crypt)[arguments]: In 'build'
phase, set 'CXXFLAGS'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-05-05 23:59:52 +02:00
Olivier Dion
ecb2710353
gnu: lttng-tools: Fix build failure. 
* gnu/packages/instrumentation.scm (lttng-tools)
[native-inputs]: Add autoconf, automake, libtool.
[arguments]: Add 'autoreconf build phase before 'configure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-05-05 23:56:04 +02:00
Andrew Whatson
61775aad6f
gnu: bear: Build against 'abseil-cpp-cxxstd11'. 
Fixes a linker error when building bear, caused by incompatibility
between abseil-cpp used by bear and abseil-cpp-cxxstd11 used by grpc.

* gnu/packages/build-tools.scm (bear)[native-inputs]: Use
ABSEIL-CPP-CXXSTD11.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-05-05 23:50:32 +02:00
Ludovic Courtès
69a65335f9
gnu: guile2.0-shepherd: Remove. 
Version 0.9.x of the Shepherd requires Guile >= 2.2.

* gnu/packages/admin.scm (guile2.0-shepherd): Remove.
 2023-05-05 23:47:49 +02:00
Ludovic Courtès
75a25d9c2a
read-print: Recognize 'wrap-program' and 'wrap-script' as special forms. 
* guix/read-print.scm (%special-forms): Add 'wrap-program' and
'wrap-script'.
 2023-05-05 23:47:48 +02:00
Ludovic Courtès
8749f31485
read-print: Correctly read "(. x)". 
* guix/read-print.scm (read-with-comments): Check whether REST is a pair
before calling 'set-cdr!'.
* tests/read-print.scm ("read-with-comments: half dot notation"): New test.
 2023-05-05 23:47:48 +02:00
Ricardo Wurmus
94d0efffb3
Revert "gnu: Add python-gimmemotifs." 
This reverts commit dc8b3ebe5d.

python-gimmemotifs is not usable without proprietary third-party tools.
 2023-05-05 22:34:30 +02:00
Christopher Baines
6922069bcb
gnu: gcc-11: Fix patch-hurd-libpthread phase. 
It didn't work when it was introduced in
08acdd0765.

* gnu/packages/gcc.scm (gcc-11)[arguments]: Remove the procedure arguments,
and use %build-inputs rather than inputs.
* gnu/packages/commencement.scm (gcc-boot0)[native-inputs]: Add hurd-patch, as
this package inherits from gcc-11.
 2023-05-05 14:57:29 +01:00
Ricardo Wurmus
dc8b3ebe5d
gnu: Add python-gimmemotifs. 
* gnu/packages/bioinformatics.scm (python-gimmemotifs): New variable.
 2023-05-05 15:39:29 +02:00
Ricardo Wurmus
adbd97cbb0
gnu: Add python-norns. 
* gnu/packages/python-xyz.scm (python-norns): New variable.
 2023-05-05 15:39:29 +02:00
Ricardo Wurmus
fcd397e4a6
gnu: Add python-xdg. 
* gnu/packages/python-xyz.scm (python-xdg): New variable.
 2023-05-05 15:39:29 +02:00
Ricardo Wurmus
25623a3b34
gnu: Add python-qnorm. 
* gnu/packages/python-xyz.scm (python-qnorm): New variable.
 2023-05-05 15:39:29 +02:00
Ricardo Wurmus
931650212a
gnu: Add python-biofluff. 
* gnu/packages/bioinformatics.scm (python-biofluff): New variable.
 2023-05-05 15:39:29 +02:00
Ricardo Wurmus
0b5088a2a3
gnu: Add python-genomepy. 
* gnu/packages/bioinformatics.scm (python-genomepy): New variable.
 2023-05-05 15:39:29 +02:00
Ricardo Wurmus
5eac2bbb71
gnu: Add python-filelock-3.5. 
* gnu/packages/python-xyz.scm (python-filelock-3.5): New variable.
 2023-05-05 15:39:29 +02:00
Ricardo Wurmus
181714e5f8
gnu: Add python-logomaker. 
* gnu/packages/bioinformatics.scm (python-logomaker): New variable.
 2023-05-05 15:39:29 +02:00
Ricardo Wurmus
f41c9409f2
gnu: Add python-mysql-connector-python. 
* gnu/packages/python-xyz.scm (python-mysql-connector-python): New variable.
 2023-05-05 15:39:28 +02:00
Ricardo Wurmus
484b843c2e
gnu: Add protobuf-3.20. 
* gnu/packages/protobuf.scm (protobuf-3.20): New variable.
 2023-05-05 15:39:28 +02:00
Ricardo Wurmus
99627b86c8
gnu: Add python-palettable. 
* gnu/packages/python-xyz.scm (python-palettable): New variable.
 2023-05-05 15:39:28 +02:00
Ricardo Wurmus
7dc853269f
gnu: python-pyfaidx: Update to 0.7.2.1. 
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.7.2.1.
[build-system]: Use pyproject-build-system.
[arguments]: Ignore tests that require large downloads.
[native-inputs]: Remove python-six; add python-fsspec, python-pytest,
python-pytest-cov, python-mock, and python-numpy.
 2023-05-05 15:39:28 +02:00
Florian Pelz
3efdc84bbd
news: Add 'de' translation. 
* etc/news.scm: Add German translation of 'with-configure-flag' entry.
 2023-05-05 10:20:55 +02:00
Lars-Dominik Braun
cf44fb964e
gnu: python-sanic: Disable failing SSL tests. 
Best guess is that they check for broken behavior in one of the
dependencies, which has changed.

* gnu/packages/python-web.scm (python-sanic)[arguments]: Disable more
tests.
 2023-05-05 09:17:49 +02:00
Lars-Dominik Braun
4e6cf8e624
gnu: python-gssapi: Update to 1.8.2. 
* gnu/packages/python-xyz.scm (python-gssapi): Update to 1.8.2.
[native-inputs]: Add python-cython.
 2023-05-05 09:17:07 +02:00
Lars-Dominik Braun
65dbd10626
gnu: python-k5test: Update to 0.10.3. 
* gnu/packages/python-xyz.scm (python-k5test): Update to 0.10.3.
 2023-05-05 09:16:34 +02:00
Lars-Dominik Braun
5d38269aca
gnu: python-atpublic: Update to 3.1.1. 
* gnu/packages/python-check.scm (python-atpublic): Update to 3.1.1.
[build-system]: Switch to pyproject-build-system.
[arguments]: Remove #:phases, override build backend.
[native-inputs]: Replace nose2 with pytest, add python-pdm-backend,
python-sybil and python-pytest-cov.
 2023-05-05 09:14:30 +02:00
Lars-Dominik Braun
d1e4803474
gnu: Add python-pdm-backend. 
* gnu/packages/python-build.scm (python-pdm-backend): New variable.
 2023-05-05 09:13:57 +02:00
Ludovic Courtès
3c91f4ca49
gnu: guix: Update to dc5430c. 
* gnu/packages/package-management.scm (guix): Update to dc5430c.
 2023-05-05 00:13:51 +02:00
Ludovic Courtès
dc5430c9dc
gnu: python-fs: Remove indirect dependency on Rust when unsupported. 
This allows to build font-abattis-cantarell on aarch64-linux.

* gnu/packages/python-xyz.scm (python-fs)[arguments]: Add #:tests?.
[native-inputs]: Turn into the empty list when cross-compiling or when
PYTHON-PYFTPDLIB is not supported.
 2023-05-04 23:14:21 +02:00
Ludovic Courtès
9e95be01d9
gnu: psautohint: Remove unneeded dependencies. 
* gnu/packages/fontutils.scm (psautohint)[native-inputs]: Remove
PYTHON-FS and PYTHON-PYTEST-RANDOMLY.
 2023-05-04 23:14:21 +02:00
Efraim Flashner
0584f5b489
services: qemu-binfmt: Add more targets. 
* gnu/services/virtualization.scm (%i486, %sparc64, %aarch64be, %xtensa,
%xtensaeb, %microblaze, %microblazeel, %or1k, %hexagon, %loongson64):
New variables.
(%armeb): Correct family field.
(%qemu-platforms): Add them.
 2023-05-04 22:28:56 +03:00
Efraim Flashner
f66344ed81
services: earlyoom: Rotate log files. 
* gnu/services/linux.scm (%earlyoom-log-rotation): New variable.
(earlyoom-service-type): Add service-extension for log rotation.
 2023-05-04 21:32:32 +03:00
Efraim Flashner
df18eac9ab
gnu: vifm: Update to 0.13. 
* gnu/packages/vim.scm (vifm): Update to 0.13.
[arguments]: Adjust substitutions in custom 'patch-test-shebangs phase.
 2023-05-04 21:32:32 +03:00
Mădălin Ionel Patrașcu
00051e8839
gnu: python-screed: Update to 1.1.2. 
* gnu/packages/bioinformatics.scm (python-screed): Update to 1.1.2.
[build-system]: Use pyproject-build-system.
[native-inputs]: Remove python-pytest.
[inputs]: Remove python-bz2file.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-05-04 19:28:23 +02:00
Navid Afkhami
5daf470e4f
gnu: Add python-goatools. 
* gnu/packages/bioinformatics.scm (python-goatools): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-05-04 19:22:04 +02:00
Navid Afkhami
040cf2df74
gnu: Add r-rcircos. 
* gnu/packages/cran.scm (r-rcircos): New variable.
 2023-05-04 19:22:04 +02:00
Ludovic Courtès
5aa1f3aa4a
build: Do not fail when '.git' is missing. 
This is a followup to a5d719012e.

* Makefile.am (.git/hooks/pre-push): Add dash.
 2023-05-04 18:51:20 +02:00
Ricardo Wurmus
d0a6c11079
gnu: Add python-diff-cover. 
* gnu/packages/python-xyz.scm (python-diff-cover): New variable.
 2023-05-04 18:47:17 +02:00
Ricardo Wurmus
155137d28a
gnu: Add python-loguru. 
* gnu/packages/python-xyz.scm (python-loguru): New variable.
 2023-05-04 18:47:17 +02:00
Ricardo Wurmus
f234cda89a
gnu: Add python-pytest-mypy-plugins. 
* gnu/packages/check.scm (python-pytest-mypy-plugins): New variable.
 2023-05-04 18:47:17 +02:00