Commit graph

133905 commits

Author SHA1 Message Date
Robert Vollmert
ed03a0aa9b
services: postgresql: Don't initdb when directory exists.
* gnu/services/databases.scm (postgresql-activation): Check if
directory exists.

Reviewed-by: Dale Mellor <guix-devel-0brg6b@rdmp.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: Id563a3e8df2cb5b805e64cd8319303c65d308c69
2024-03-30 01:01:32 +01:00
Ludovic Courtès
b0a37d8b1a
doc: Cross-reference virtual build machines from ‘guix time-machine’.
* doc/guix.texi (Invoking guix time-machine): Tweak the note about
packages that may fail to build.  Add cross-reference to virtual build
machines.

Change-Id: Ib2a4a28cdca0c8970d0f5327e39b4a21800ea2e1
2024-03-30 01:01:32 +01:00
Ludovic Courtès
fbcd9022c6
doc: ‘guix time-machine’ can travel to v0.16.0.
This is a followup to a26bce55e6.

* doc/guix.texi (Invoking guix time-machine): Update reference to oldest
commit.

Change-Id: Iae3d751d4377de92481276f9f2f31128f85c23c4
2024-03-30 01:01:31 +01:00
Ludovic Courtès
ddc9d66f2b
substitute: Retry nar download upon networking error.
This allows ‘guix substitute’ to gracefully handle errors like:

  TLS error in procedure 'write_to_session_record_port': Error in the push function

instead of exiting (“`guix substitute' died unexpectedly”).

* guix/scripts/substitute.scm (download-nar)[try-fetch]: Catch
‘network-error?’ too.

Reported-by: Ada Stevenson <adanskana@gmail.com>
Change-Id: I91b92183b0165832645ee37d50c13445f9322525
2024-03-30 01:01:31 +01:00
Ludovic Courtès
80a135d64b
channels: Autoload several modules.
* guix/channels.scm: Autoload several Git-related modules.

Change-Id: I23e46eabdbfa9db340e26006419b4b87bb446853
2024-03-30 01:01:31 +01:00
Vinicius Monego
9dae1488a4
gnu: muse-sequencer: Update to 4.2.1.
* gnu/packages/music.scm (muse-sequencer): Update to 4.2.1.
[native-inputs]: Add extra-cmake-modules.

Change-Id: Ieba29ffd20539b8f5820bc1598db2262126ee0dc
2024-03-29 16:45:42 -03:00
Vinicius Monego
23acd17cc6
gnu: cdo: Update to 2.4.0.
* gnu/packages/geo.scm (cdo): Update to 2.4.0.
[source]: Update URL.
[native-inputs]: Add python-wrapper.

Change-Id: Ic2dad47e04d99b2903b3d7f53862e1ffa6e4d220
2024-03-29 16:45:38 -03:00
Vinicius Monego
73c5dee29b
gnu: python-cmaes: Update to 0.10.0.
* gnu/packages/machine-learning.scm (python-cmaes): Update to 0.10.0.

Change-Id: I90e6a3d5c64e48bba969b2eed7696200da29fffe
2024-03-29 16:45:31 -03:00
Vinicius Monego
dbe16f5a68
gnu: python-celery: Update to 5.3.6.
* gnu/packages/python-xyz.scm (python-celery): Update to 5.3.6.
[build-system]: Use pyproject-build-system.
[arguments]: Replace pytz with tzdata in the relax-requirements phase. Do not
override the check phase, skip tests in #:test-flags instead.
[native-inputs]: Add python-pytest-click.
[propagated-inputs]: Add python-tzdata. Remove python-pytz.

Change-Id: I4cb6a1c6712d5b54f4d9a6731447e9459e8ff81a
2024-03-29 16:19:51 -03:00
Vinicius Monego
1f3173786a
gnu: python-vine: Update to 5.1.0.
* gnu/packages/python-xyz.scm (python-vine): Update to 5.1.0.
[build-system]: Use pyproject-build-system.

Change-Id: I2621eb21deb516d16e9cc50ff9237aed1b6b46b8
2024-03-29 16:19:51 -03:00
Vinicius Monego
905a306102
gnu: python-kombu: Update to 5.3.6.
* gnu/packages/python-xyz.scm (python-kombu): Update to 5.3.6.
[build-system]: Use pyproject-build-system.
[arguments]: Do not override the check phase. Ignore a file in #:test-flags.
[native-inputs]: Add python-botocore, python-tzdata. Remove python-pytz.
[propagated-inputs]: Add python-typing-extensions. Remove
python-cached-property.

Change-Id: I4b36effff8b17af388d56c90bf8983954adf4333
2024-03-29 16:19:51 -03:00
Vinicius Monego
a65a96aff6
gnu: python-billiard: Update to 4.2.0.
* gnu/packages/python-xyz.scm (python-billiard): Update to 4.2.0.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-Expressions. Do not delete test files.

Change-Id: I69ec62c0c28e9c7ff6ce65f722b250f50dbb33da
2024-03-29 16:19:48 -03:00
Sharlatan Hellseher
423ca234cb
gnu: rust-xkbcommon-dl: Fix loading of libxkbcommon-x11.so.
This to resolve Alacritty segmentation fault reported in #68243, attemp
to fix in #69797.

* gnu/packages/crates-graphics.scm (rust-xkbcommon-dl) [arguments]:
Handle libxkbcommon-x11.so in the ‘add-absolute-library-references’
phase.

Change-Id: Ib724775210cfad7dedaa454f0f456c0dded67dcc
2024-03-29 19:08:38 +00:00
Sharlatan Hellseher
25d66b55c2
gnu: python-distributed: Disable parallel tests.
As seen in <https://ci.guix.gnu.org/build/3708961/log/raw>, parallel
tests introduced package build regression.

* gnu/packages/python-science.scm (python-distributed) [arguments]
<#:test-flags>: Disable parallel tests.
[native-inputs]: Remove python-pytest-xdist.

Change-Id: I3a04098604fa03ab91ceb228dd70c34c3d84db78
2024-03-29 19:08:08 +00:00
Fabio Natali
6cde0f480d
gnu: Add python-apprise.
* gnu/packages/python-xyz.scm (python-apprise): New variable.

Change-Id: I55b8c7b558ce34835cff31b9fac6ff3b81ff5fec
Signed-off-by: jgart <jgart@dismail.de>
2024-03-29 12:04:32 -05:00
Mehmet Tekman
37d31495c1
gnu: krita: Update to 5.2.1.
Due to a missing patch in the upstream libraqm, we cannot depend on the
existing libraqm library, but must instead use the one embedded in the
package. It compiles, but needs to be told to use the -fPIC flag.

Dependency fftw also does not provide the required CMake file
FFTW3Librarydepends.cmake, and only does so when compile via cmake and
not gnu. Due to the many packages that depend on fftw, a seperate
fftw-cmake was used.

* gnu/packages/kde.scm (krita): Update to 5.2.1.

Change-Id: I956451d05d8499580b909e843fd8e4418e396642
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-29 16:45:45 +00:00
Mehmet Tekman
74d2c8304f
gnu: fftw-cmake: New Variables.
This is a clone of the fftw function, but uses cmake to build in order
for the FFTW3LibraryDepends.cmake file to be built, neccesary for
packages with cmake builds that depend on fftw3.

See: https://bugzilla.redhat.com/show_bug.cgi?id=1729652#c5

This variable inherits from the existing fftw3 in order to not break any
downstream packages that make use of the target optimizations given by
the gnu build.

* gnu/packages/algebra.scm (fftw-cmake): New variable.

Change-Id: Idb06f86031123de3b2621953a385f4f57d9b5cc5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-29 16:45:12 +00:00
jgart
82d33ff33c
gnu: python-statsmodels: Update home-page url.
* gnu/packages/statistics.scm (home-page): Update home-page url.
[home-page]: Add package associated versioning to project website url.

Change-Id: I0909674d0f8c502aa55f4f7423308bd0eaaaf52e
2024-03-29 11:15:10 -05:00
Sharlatan Hellseher
b0b9d757a7
gnu: python-hvpy: Update to 1.1.0.
* gnu/packages/astronomy.scm (python-hvpy): Update to 1.1.0.
[propagated-inputs]: Remove python-pydantic; add python-pydantic-2 and
python-pydantic-settings.

Change-Id: Id567cff01204d2e8d71bc49ec9ffc88b2bbb3f4e
2024-03-29 15:08:12 +00:00
Sharlatan Hellseher
a0cf3af1ad
gnu: Add python-pydantic-settings.
* gnu/packages/python-xyz.scm (python-pydantic-settings): New variable.

Change-Id: I410edc37f17a293f3d40ce9a2ab6416ea35bae39
2024-03-29 15:08:12 +00:00
Sharlatan Hellseher
90b636e4b3
gnu: Add python-pytest-examples.
* gnu/packages/check.scm (python-pytest-examples): New variable.

Change-Id: I8199a7d7294c3b04134474f9f116468ac327cba8
2024-03-29 15:08:11 +00:00
Sharlatan Hellseher
0fd36bed26
gnu: Add python-cmyt.
* gnu/packages/python-xyz.scm (python-cmyt): New variable.

Change-Id: I45caa38fc391fe7890f87f41b18d3cfa8da07c80
2024-03-29 15:08:11 +00:00
Sharlatan Hellseher
18ac6a247c
gnu: Add python-ewah-bool-utils.
* gnu/packages/python-compression.scm (python-ewah-bool-utils): New variable.

Change-Id: Ib9730d599f66bc2b864bfd305135e367f89ba9dd
2024-03-29 15:08:11 +00:00
Sharlatan Hellseher
36ce356616
gnu: Add python-nose-exclude.
* gnu/packages/check.scm (python-nose-exclude): New variable.

Change-Id: I5c91b682163890c822f7d4a548e92fdd287d78a2
2024-03-29 15:08:11 +00:00
Sharlatan Hellseher
632cb6aa55
gnu: Add python-astroplan.
* gnu/packages/astronomy.scm (python-astroplan): New variable.

Change-Id: Ia13998c3ccfaab57a9d0670dbd7b4e1c1b92b57a
2024-03-29 15:08:11 +00:00
Sharlatan Hellseher
6933d9ef0a
gnu: Add python-asdf-compression.
* gnu/packages/astronomy.scm (python-asdf-compression): New variable.

Change-Id: I221990d2f25f31dd5272a3ccc4c603da8dac353b
2024-03-29 15:08:11 +00:00
Sharlatan Hellseher
7d817bb380
gnu: Add python-asdf-zarr.
* gnu/packages/astronomy.scm (python-asdf-zarr): New variable.

Change-Id: If26b31aeeb90a595a4d384755ba9060101ee4c8a
2024-03-29 15:08:11 +00:00
Sharlatan Hellseher
0c1c89ac65
gnu: python-pynbody: Update to 1.6.0.
* gnu/packages/astronomy.scm (python-pynbody): Update to 1.6.0.
[arguments] <#:test-flags>: Disable more tests.

Change-Id: Icfb65fccbd1e7694a64aa52caa7b905e1b9a1a87
2024-03-29 15:08:11 +00:00
Sharlatan Hellseher
25e5d205e0
gnu: python-crds: Update to 11.17.19.
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.19.

Change-Id: I455e3d6aeb0188d13c02e1c57aa3793689c0de5c
2024-03-29 15:08:11 +00:00
Sharlatan Hellseher
22efd8b2ca
gnu: python-stdatamodels: Update to 1.10.0.
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.10.0.

Change-Id: I69f98de3e98d22c636ec726ab3ce17f5d96fbb51
2024-03-29 15:08:10 +00:00
Sharlatan Hellseher
278bc81add
gnu: python-stcal: Enable sanity check.
* gnu/packages/astronomy.scm (python-stcal) [arguments] <#:phases>:
Revert 'sanity-check phase. Add 'silent-check-for-opencv phase.

Change-Id: Ifd3ae01d261fe6dba8f5e75d4a5134510d826a57
2024-03-29 15:08:10 +00:00
Sharlatan Hellseher
5828d49359
gnu: python-stcal: Update to 1.6.1.
* gnu/packages/astronomy.scm (python-stcal): Update to 1.6.1.

Change-Id: Ifca867967c302234d38bbe4fa6fcd2a1d61914cf
2024-03-29 15:08:10 +00:00
Sharlatan Hellseher
a2f7238aaa
gnu: python-specutils: Update to 1.13.0.
* gnu/packages/astronomy.scm (python-specutils): Update to 1.13.0.

Change-Id: Ic935f471fd9f5e27745c370940e3f70f715d2ca4
2024-03-29 15:08:10 +00:00
Sharlatan Hellseher
2b8e62cba5
gnu: python-glymur: Update to 0.12.9.
* gnu/packages/python-xyz.scm (python-glymur): Update to 0.12.9.

Change-Id: Ifb84738df85cb6142fc5ecafa164a6dc4148a69e
2024-03-29 15:08:10 +00:00
Sharlatan Hellseher
0a8d67cf74
gnu: python-radiospectra: Update to 0.5.0.
* gnu/packages/astronomy.scm (python-radiospectra): Update to 0.5.0.

Change-Id: I9146be6756530e5bda59ea53e3200ed8403fd672
2024-03-29 15:08:10 +00:00
Sharlatan Hellseher
427c271aea
gnu: python-suntime: Refresh package style.
* gnu/packages/astronomy.scm (python-suntime): Re-indent package.
[build-system]: Swap to pyproject-build-system
[description]: Concatenate small paragraphs into single one.

Change-Id: I368f042eeab2f49c6f41b2ccf0c9a69c8abfec17
2024-03-29 15:08:10 +00:00
Sharlatan Hellseher
00dcf62a8d
gnu: python-suntime: Update to 1.3.2.
* gnu/packages/astronomy.scm (python-suntime): Update to 1.3.2.

Change-Id: I0af01462f3732ce9ece89a3d8bd8533563ece929
2024-03-29 15:08:10 +00:00
Sharlatan Hellseher
3745a93a98
gnu: python-drizzle: Update to 1.15.1.
* gnu/packages/astronomy.scm (python-drizzle): Update to 1.15.1.

Change-Id: I263ef052f61f0b6088be408b208fa31d55050429
2024-03-29 15:08:09 +00:00
Sharlatan Hellseher
91a8fccf61
gnu: python-gwcs: Update to 0.21.0.
* gnu/packages/astronomy.scm (python-gwcs): Update to 0.21.0.

Change-Id: I3e634366c4eaf36b76dd7e3e120fb3ed0b21dcab
2024-03-29 15:08:09 +00:00
Sharlatan Hellseher
988c730a9a
gnu: python-astroquery: Update to 0.4.7.
* gnu/packages/astronomy.scm (python-astroquery): Update to 0.4.7.
[arguments] <#:test-flags>: Disable one failing test.
<#:phases>: Remove 'prepare-test-environment phase. Add custom 'check
phase.

Change-Id: I159a9d765de7f8de00c4bf226febfc90d2ba6c76
2024-03-29 15:08:09 +00:00
Sharlatan Hellseher
f730baee59
gnu: python-pyvo: Update to 1.5.1.
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.5.1.

Change-Id: I51228822626a0fac9013580a7bfb7160980ac8fb
2024-03-29 15:08:09 +00:00
Sharlatan Hellseher
4bf460b7f5
gnu: python-asdf-astropy: Update to 0.6.0
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.6.0.

Change-Id: I5eca1d6c113b053b8353ed43e7dfc2c7165a3139
2024-03-29 15:08:09 +00:00
Sharlatan Hellseher
dbe107658a
gnu: python-asdf-wcs-schemas: Update to 0.4.0.
* gnu/packages/astronomy.scm (python-asdf-wcs-schemas): Update to 0.4.0.
[propagated-inputs]: Remove python-asdf-unit-schemas; add python-asdf-coordinates-schemas.

Change-Id: I491f3f7b96b11a1ac894a30aa304d3042299de99
2024-03-29 15:08:09 +00:00
Sharlatan Hellseher
19d56a3d51
gnu: python-asdf-coordinates-schemas: Update to 0.3.0.
* gnu/packages/astronomy.scm (python-asdf-coordinates-schemas): Update to 0.3.0.

Change-Id: Iad7848823f4b6c996aeb74919cbf252014126075
2024-03-29 15:08:09 +00:00
Sharlatan Hellseher
250f181744
gnu: python-asdf: Update to 3.1.0.
* gnu/packages/astronomy.scm (python-asdf): Update to 3.1.0.
[arguments] <#:phases>: Add 'fix-test-setup phase.
<#:test-arguments>: Move "-p no:legacypath" option from pyproject.toml
to here.

Change-Id: Ief5734d97d483d2e7af3ea59d702fd4697eb048a
2024-03-29 15:08:09 +00:00
Sharlatan Hellseher
dc21d8e57a
gnu: python-asdf-transform-schemas: Update to 0.5.0.
* gnu/packages/astronomy.scm (python-asdf-transform-schemas): Update to 0.5.0.

Change-Id: Ibf122fa98260de9a472a9c2786f85e1f1098fa19
2024-03-29 15:08:09 +00:00
Sharlatan Hellseher
87d5ae0093
gnu: python-asdf-standard: Update to 1.1.1.
* gnu/packages/astronomy.scm (python-asdf-standard): Update to 1.1.1.
[arguments] <#:phases>: Swap 'remove-blocking-tests phases to use <#:test-flags>.
<#:test-flags>: Add more file to ignore to break cycle with python-asdf.

Change-Id: I8c80d4371adf55de77ef718a21bf8599d0fce17e
2024-03-29 15:08:08 +00:00
Sharlatan Hellseher
5754757486
gnu: python-asdf-unit-schemas: Update to 0.2.0.
* gnu/packages/astronomy.scm (python-asdf-unit-schemas): Update to 0.2.0.

Change-Id: Ib767a5b3e1d58205e18eb71465a1505d6ba7a7eb
2024-03-29 15:08:08 +00:00
Sharlatan Hellseher
e1e2ee1e55
gnu: python-cdflib: Enable all tests.
* gnu/packages/astronomy.scm (python-cdflib) [arguments] <#:test-flags>:
Remove it to enable all tests.

Change-Id: I0fd44c117519efb306573d5ec603c430dbb1dc8c
2024-03-29 15:08:08 +00:00
Sharlatan Hellseher
8aa70135ce
gnu: python-cdflib: Update to 1.2.6.
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.6.

Change-Id: Iae2e39e756e5e9664a1b524aa1155d128dc0292c
2024-03-29 15:08:08 +00:00