Commit graph

37026 commits

Author SHA1 Message Date
Efraim Flashner
efe0a4a2a7
gnu: dvd+rw-tools: Use invoke.
* gnu/packages/cdrom.scm (dvd+rw-tools): Use 'invoke'.
2018-11-10 19:59:30 +02:00
Efraim Flashner
2529c8381f
gnu: dvd+rw-tools: Fix building with glibc@2.28.
* gnu/packages/cdrom.scm (dvd+rw-tools)[arguments]: Add custom phase to
add missing import.
2018-11-10 19:59:27 +02:00
Efraim Flashner
8754ea483d
gnu: f2fs-tools: Update to 1.11.0.
* gnu/packages/linux.scm (f2fs-tools): Update to 1.11.0.
2018-11-10 19:29:17 +02:00
Marius Bakke
64461ba20a
Merge branch 'master' into core-updates 2018-11-09 17:02:08 +01:00
Ricardo Wurmus
cee9ab244f
gnu: r-with-tests: Update to 3.5.1.
* gnu/packages/statistics.scm (r-with-tests): Update to 3.5.1.
2018-11-09 14:07:26 +01:00
Ricardo Wurmus
2eaaadb4d6
gnu: r-with-tests: Use INVOKE.
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Use INVOKE and
return #T unconditionally.
2018-11-09 14:07:22 +01:00
Pierre Neidhardt
ddd925f608
gnu: Add emacs-gtk-look.
* gnu/packages/emacs.scm (emacs-gtk-look): New variable.
2018-11-09 11:55:08 +01:00
Pierre Neidhardt
2cce23bfb8
gnu: Add xmlrpc-c.
* gnu/packages/xml.scm (xmlrpc-c): New variable.
2018-11-09 11:55:08 +01:00
Mathieu Othacehe
97f33b05ec
gnu: guile-newt: Update to revision 1.
* gnu/packages/guile.scm (guile-newt): Update to revision 1.
2018-11-09 19:39:14 +09:00
Ricardo Wurmus
1b12b572a5
gnu: powertabeditor: Fetch sources from git.
* gnu/packages/music.scm (powertabeditor)[source]: Fetch from git.
2018-11-09 08:37:53 +01:00
Ricardo Wurmus
b1b82aed5d
gnu: powertabeditor: Use INVOKE.
* gnu/packages/music.scm (powertabeditor)[arguments]: Use INVOKE and return #T
unconditionally.
2018-11-09 08:37:53 +01:00
Kei Kebreau
e4b62e229e
gnu: wxmaxima: Update to 18.10.1.
* gnu/packages/maths.scm (wxmaxima): Update to 18.10.1.
[source]: Update URL and remove patch.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2018-11-09 01:09:06 -05:00
Leo Famulari
41d2b7f50b
gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850].
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
2018-11-08 13:42:56 -05:00
Pierre Neidhardt
2705780f3f
gnu: Add emacs-clang-format.
* gnu/packages/emacs.scm (emacs-clang-format): New variable.
2018-11-08 13:08:26 +01:00
Efraim Flashner
e3407254d5
gnu: kodi: Update to 18.0b5.
* gnu/packages/kodi.scm (kodi): Update to 18.0b5.
[source]: Update snippet.
[inputs]: Add flatbuffers, fstrcmp.
(crossguid): Update to commit fef89a4174a7bf8cd99fa9154864ce9e8e3bf989.
(libdvdnav/kodi, libdvdread/kodi): Update to 6.0.0-Leia-Alpha-3.
(libdvdcss/kodi): Update to 1.4.2-Leia-Beta-5.
2018-11-08 12:01:24 +02:00
Efraim Flashner
988b78ba28
gnu: Add fstrcmp.
* gnu/packages/kodi.scm (fstrcmp): New variable.
2018-11-08 12:01:20 +02:00
Laura Lazzati
8fa9ace1d6
doc: Add index entries.
* doc/guix.texi: Added various cindex tags to assist readers.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-08 10:24:36 +01:00
Stefan Stefanović
ec86863113
services: elogind: Fix spelling errors of left value fields in elogind config file.
* gnu/services/desktop.scm (elogind-configuration-file)[ini-file]:
    Fix spelling of left value fields:
    InhibitDelayMaxSecs, HoldoffTimeoutSecs, IdleActionSeconds, RemoveIpc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-08 10:24:35 +01:00
Luther Thompson
9870b9f7f8
gnu: python-ilinkedlist: Update to 0.3.1.
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.3.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-08 10:24:26 +01:00
Vagrant Cascadian
195e081b43
gnu: Add python-pyelftools.
* gnu/packages/python.scm (python-pyelftools):
  New public variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-08 10:24:22 +01:00
Ricardo Wurmus
69cb939ee7
gnu: libmusicbrainz: Use INVOKE.
* gnu/packages/music.scm (libmusicbrainz)[arguments]: Use INVOKE and return #T
unconditionally.
2018-11-08 10:17:15 +01:00
Ricardo Wurmus
9ab90ead36
gnu: pd: Remove custom autoconf phase.
* gnu/packages/music.scm (pd)[arguments]: Remove custom autoconf phase.
2018-11-08 10:14:08 +01:00
Ricardo Wurmus
4e82946888
gnu: cmus: Fetch sources from git.
* gnu/packages/music.scm (cmus)[source]: Fetch from git.
2018-11-08 10:10:06 +01:00
Ricardo Wurmus
ec618c2005
gnu: cmus: Use INVOKE.
* gnu/packages/music.scm (cmus)[arguments]: Use INVOKE and return #T
unconditionally.
2018-11-08 10:09:32 +01:00
Ricardo Wurmus
9c30cba431
gnu: pcc: Use INVOKE.
* gnu/packages/c.scm (pcc)[arguments]: Use INVOKE and return #T
unconditionally.
2018-11-08 10:08:09 +01:00
Ricardo Wurmus
a1e83a9856
gnu: pplacer-scripts: Use INVOKE.
* gnu/packages/bioinformatics.scm (pplacer-scripts)[arguments]: Use INVOKE and
return #T unconditionally.
2018-11-08 10:06:35 +01:00
Ricardo Wurmus
ce49fdcce9
gnu: roary: Use INVOKE.
* gnu/packages/bioinformatics.scm (roary)[arguments]: Use INVOKE and return #T
unconditionally.
2018-11-08 09:58:05 +01:00
Ricardo Wurmus
a9542937c8
gnu: seek: Use INVOKE.
* gnu/packages/bioinformatics.scm (seek)[arguments]: Use INVOKE and return #T
unconditionally; patch "gen_tools_am" shebang in "bootstrap" phase.
2018-11-08 09:54:22 +01:00
Ricardo Wurmus
9f527c9199
gnu: sailfish: Use INVOKE.
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use INVOKE instead of
SYSTEM*.
2018-11-08 09:52:46 +01:00
Ricardo Wurmus
86c6928ea3
gnu: vsearch: Update to 2.9.1.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.9.1.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: Update.
2018-11-08 09:46:42 +01:00
Ricardo Wurmus
15c9609482
gnu: sra-tools: Update to 2.9.3.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.3.
[arguments]: Remove build phase patch-away-glibc-conflict.
2018-11-08 09:46:05 +01:00
Ricardo Wurmus
b17333414f
gnu: plink-ng: Fetch sources from git.
* gnu/packages/bioinformatics.scm (plink-ng)[source]: Fetch from git.
2018-11-08 09:30:59 +01:00
Ricardo Wurmus
87408854ec
gnu: ncbi-vdb: Update to 2.9.3.
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.3.
2018-11-08 09:30:16 +01:00
Ricardo Wurmus
8d3eaa9262
gnu: ngs-sdk: Update to 2.9.3.
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.3.
2018-11-08 09:29:58 +01:00
Ricardo Wurmus
3da3cedf76
gnu: ngs-sdk: Use INVOKE.
* gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Use INVOKE and
return #T unconditionally.
2018-11-08 09:15:05 +01:00
Ricardo Wurmus
e78e54d029
gnu: emboss: Use INVOKE.
* gnu/packages/bioinformatics.scm (emboss)[arguments]: Use INVOKE and
return #T unconditionally.
2018-11-08 09:14:09 +01:00
Ricardo Wurmus
8b685c4720
gnu: taxtastic: Use INVOKE.
* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Use INVOKE and
return #T unconditionally.
2018-11-08 09:13:35 +01:00
Ricardo Wurmus
2e2d88539c
gnu: sra-tools: Use INVOKE.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use INVOKE and
return #T unconditionally.
2018-11-08 09:12:43 +01:00
Ricardo Wurmus
179416467f
gnu: muscle: Use INVOKE.
* gnu/packages/bioinformatics.scm (muscle)[arguments]: Use INVOKE and
return #T unconditionally.
2018-11-08 09:11:38 +01:00
Ricardo Wurmus
0881d62f25
gnu: newick-utils: Remove custom autoconf phase.
* gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Remove.
2018-11-08 09:10:58 +01:00
Ricardo Wurmus
e35dce0170
gnu: mash: Remove custom autoconf phase.
* gnu/packages/bioinformatics.scm (mash)[arguments]: Remove autoconf phase.
2018-11-08 09:10:20 +01:00
Ricardo Wurmus
31c41a8cfe
gnu: vsearch: Remove custom autogen phase.
* gnu/packages/bioinformatics.scm (vsearch)[arguments]: Remove.
2018-11-08 09:04:34 +01:00
Ricardo Wurmus
c527d36f02
gnu: java-picard-1.113: Use INVOKE.
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Use INVOKE
and return #T unconditionally.
2018-11-08 09:02:34 +01:00
Ricardo Wurmus
e438c96558
gnu: fraggenescan: Use INVOKE.
* gnu/packages/bioinformatics.scm (fraggenescan)[arguments]: Use INVOKE in
build phases and return #T unconditionally.
2018-11-08 08:58:46 +01:00
Ricardo Wurmus
c098c49b3e
gnu: sailfish: Fetch sources from git.
* gnu/packages/bioinformatics.scm (sailfish)[source]: Fetch from git.
2018-11-08 08:53:54 +01:00
Ricardo Wurmus
4031e7f1ec
gnu: ngs-sdk: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ngs-sdk)[source]: Fetch from git.
2018-11-08 08:53:53 +01:00
Ricardo Wurmus
6a7d9ee39f
gnu: ncbi-vdb: Use INVOKE and end phases on #T.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use INVOKE and
unconditionally end phases with #T.
2018-11-08 08:53:53 +01:00
Ricardo Wurmus
3398dfb764
gnu: ncbi-vdb: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[source]: Fetch from git.
[arguments]: Add phase to make checkout writable.
2018-11-08 08:53:53 +01:00
Ricardo Wurmus
e0f1aa2d2b
gnu: tadbit: Fetch sources from git.
* gnu/packages/bioinformatics.scm (tadbit)[source]: Fetch from git.
[version]: Use "2.0.0" instead of "2.0".
2018-11-08 08:53:50 +01:00
Kei Kebreau
ed33049cdc
gnu: pspp: Update to 1.2.0.
* gnu/packages/statistics.scm (pspp): Update to 1.2.0.
[inputs]: Add spread-sheet-widget.
[native-inputs]: Add autoconf, python-2, and texinfo.
2018-11-07 17:46:25 -05:00