Ricardo Wurmus
f04a3eff98
gnu: r-org-ce-eg-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.4.0.
2016-11-11 09:08:08 +01:00
Ricardo Wurmus
83f9a6fb60
gnu: r-org-hs-eg-db: Update to 3.4.0.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.4.0.
2016-11-11 09:08:07 +01:00
Leo Famulari
071c223bfa
gnu: linux-libre@4.4: Update to 4.4.31.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.31.
2016-11-11 01:31:19 -05:00
Leo Famulari
86fc6fe777
gnu: linux-libre: Update to 4.8.7.
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* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.7.
2016-11-11 01:31:15 -05:00
Ludovic Courtès
472fc855bc
gnu: Add guile-aspell.
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* gnu/packages/guile.scm (guile-aspell): New variable.
2016-11-11 00:23:16 +01:00
Ludovic Courtès
2c5ab05bff
gnu: wordnet: Build with gcc@6 to prevent chunked literal strings.
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* gnu/packages/wordnet.scm (wordnet)[arguments]: Remove
-fno-builtin-strcpy.
[native-inputs]: New field.
2016-11-11 00:23:16 +01:00
Leo Famulari
aba5182c69
gnu: python-pillow: Update to 3.3.3 [fixes CVE-2016-{9189,9190}].
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* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.3.
2016-11-10 18:17:50 -05:00
Ricardo Wurmus
b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode".
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This phase is no longer needed as upstream has merged the fix in the
current release.
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
2016-11-10 18:49:49 +01:00
Ricardo Wurmus
3f62fa2b81
gnu: inkscape: Use modify-phases syntax.
...
* gnu/packages/inkscape.scm (inkscape)[arguments]: Use modify-phases
syntax.
2016-11-10 18:49:48 +01:00
Marius Bakke
65d2f396f7
gnu: vim: Update to 8.0.0073.
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* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0073.
2016-11-10 17:30:08 +00:00
Ludovic Courtès
5970e8e248
container: Pass a list of <file-system> objects as things to mount.
...
* gnu/build/linux-container.scm (mount-file-systems): 'mounts' is now a
list of <file-system> objects instead of a list of lists ("specs").
Add call to 'file-system->spec' as the argument to 'mount-file-system'.
(run-container, call-with-container): Adjust docstring accordingly.
* gnu/system/file-systems.scm (spec->file-system): New procedure.
* gnu/system/linux-container.scm (container-script)[script]: Call
'spec->file-system' inside gexp.
* guix/scripts/environment.scm (launch-environment/container): Remove
call to 'file-system->spec'.
* tests/containers.scm ("call-with-container, mnt namespace")
("call-with-container, mnt namespace, wrong bind mount"): Pass a list of
<file-system> objects.
2016-11-10 18:01:44 +01:00
Ludovic Courtès
5e7eaccb14
linux-container: Use 'source-module-closure' when generating the script.
...
* gnu/system/linux-container.scm (container-script)[script]: Use
'source-module-closure' in 'with-imported-modules' form.
2016-11-10 18:01:44 +01:00
Ludovic Courtès
9e4e431e04
gnu: guix: Update development snapshot.
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* gnu/packages/package-management.scm (guix-devel): Update to commit
324a2ba56c
2016-11-10 18:01:44 +01:00
Paul Garlick
1c79e0861a
gnu: gmsh: Update to 2.14.1
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* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-10 18:57:57 +02:00
Marius Bakke
1b35fea19f
gnu: milkytracker: Update upstream location.
...
* gnu/packages/music.scm (milkytracker)[source]: Update source uri.
[home-page]: Change to new domain.
Reported-by: ng0 <ng0@we.make.ritual.n0.is>
2016-11-10 16:33:57 +00:00
Leo Famulari
8f9c89d13b
gnu: imagemagick: Update to 6.9.6-4.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-4.
2016-11-10 11:33:20 -05:00
Tobias Geerinckx-Rice
f34284abcb
gnu: claws-mail: Update to 3.14.1.
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* gnu/packages/mail.scm (claws-mail): Update to 3.14.1.
2016-11-10 14:30:09 +01:00
Hartmut Goebel
99abcdbd9b
gnu: Add pdfposter.
...
* gnu/packages/pdf.scm(pdfposter): New variable.
2016-11-10 14:26:04 +01:00
Hartmut Goebel
c68e8591d8
gnu: Add python2-pypdf.
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* gnu/packages/pdf.scm (python2-pypdf): New variable.
2016-11-10 14:26:04 +01:00
Hartmut Goebel
ad5a7d49c3
gnu: Add python-pypdf2.
...
* gnu/packages/pdf.scm (python-pypdf2, python2-pypdf2): New variables.
2016-11-10 14:26:04 +01:00
Ludovic Courtès
324a2ba56c
tests: Adjust 'url-fetch' mocks to TLS changes.
...
This is a followup to bc3c41ce36
2016-11-10 11:58:43 +01:00
Ludovic Courtès
8033772363
gnu: gcc@5, gcc@6: Work around use of 'movabs' for /gnu/store strings.
...
Partly addresses <http://bugs.gnu.org/24703 >.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/patches/gcc-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5)[sources](patches): Add it.
(gcc-6)[sources](patches): Add it.
2016-11-09 21:24:44 +01:00
Ludovic Courtès
c169d91e5a
lint: 'cve' checker catches 'tls-certificate-error'.
...
Reported by Frederick Muriithi <fredmanglis@gmail.com>.
* guix/scripts/lint.scm (tls-certificate-error-string): New procedure.
(validate-uri): Use it.
(current-vulnerabilities*): Catch 'tls-certificate-error' and print a
warning.
2016-11-09 21:24:44 +01:00
Thomas Danckaert
8bb115e0c6
gnu: Add kdevelop-pg-qt.
...
* gnu/packages/kde.scm (kdevelop-pg-qt): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09 21:24:44 +01:00
Thomas Danckaert
5a16e1c04e
gnu: Add libkomparediff2.
...
* gnu/packages/kde.scm (libkomparediff2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-09 21:24:44 +01:00
Ludovic Courtès
28791c1c8d
gnu: hidapi: Fix 'license'.
...
* gnu/packages/libusb.scm (hidapi)[license]: Actually call
'non-copyleft'.
2016-11-09 21:24:44 +01:00
Ludovic Courtès
624144e0e7
doc: Mention elpa.gnu.org package signatures.
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* doc/guix.texi (Invoking guix import): Document elpa.gnu.org
signatures.
2016-11-09 21:24:43 +01:00
Efraim Flashner
65dccb3a86
gnu: Add vifm.
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* gnu/packages/vim.scm (vifm): New variable.
2016-11-09 20:56:36 +02:00
Leo Famulari
0b34b58688
gnu: libxslt: Fix CVE-2016-4738.
...
* gnu/packages/patches/libxslt-CVE-2016-4738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
2016-11-09 10:19:49 -05:00
Efraim Flashner
d887f420d2
gnu: postgresql: Update to 9.5.5.
...
* gnu/packages/databases.scm (postgresql): Update to 9.5.5.
[home-page]: Use https.
2016-11-09 11:39:30 +02:00
Efraim Flashner
bc332a638b
gnu: mariadb: Update to 10.1.19.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.19.
2016-11-09 11:04:36 +02:00
John Darrington
859e367d07
gnu: Add pam-krb5 service.
...
* doc/guix.texi (Kerberos Services): New node.
* gnu/services/kerberos.scm: New file.
* gnu/local.mk: Add it.
2016-11-08 21:35:26 +01:00
Ricardo Wurmus
8ae6040451
gnu: Add faust-2.
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* gnu/packages/audio.scm (faust-2): New variable.
2016-11-08 21:00:02 +01:00
Ricardo Wurmus
83c49858b5
gnu: Add LLVM variant with RTTI support.
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* gnu/packages/llvm.scm (llvm-with-rtti): New variable.
2016-11-08 20:59:58 +01:00
Marius Bakke
f0ad50af8c
gnu: python-tempest-lib: Update to 1.0.0.
...
* gnu/packages/openstack.scm (python-tempest-lib): Update to 1.0.0.
[home-page]: Use HTTPS.
2016-11-08 18:22:48 +00:00
Marius Bakke
43b53bbbf5
gnu: python-os-testr: Update to 0.8.0.
...
* gnu/packages/openstack.scm (python-os-testr, python2-os-testr): Update
to 0.8.0.
[home-page]: Use HTTPS.
2016-11-08 18:22:18 +00:00
Marius Bakke
eaba9d6670
gnu: python-jsonschema: Correct inputs.
...
* gnu/packages/python.scm (python-jsonschema)[inputs]: Remove
python-setuptools. Move python-vcversioner to ...
[native-inputs]: ... here.
* gnu/packages/python.scm (python2-jsonschema)[inputs]: Move
python2-functools32 to ...
[propagated-inputs]: ... here.
[native-inputs]: Add python2-setuptools.
2016-11-08 18:22:07 +00:00
Leo Famulari
c163a28473
gnu: libgit2: Update to 0.24.3 [fixes CVE-2016-{8568,8569}].
...
* gnu/packages/version-control.scm (libgit2): Update to 0.24.3.
2016-11-08 12:48:26 -05:00
Marius Bakke
912dcbad86
gnu: python-cryptography, python-cryptography-vectors: Update to 1.5.3.
...
* gnu/packages/python.scm (python-cryptography, python2-cryptography):
Update to 1.5.3.
[native-inputs]: Add python-pytz. Change python-pytest to python-pytest-2.9.2.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.5.3.
2016-11-08 16:14:15 +00:00
Leo Famulari
fca4ff3559
gnu: Add python-pytest-2.9.2.
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* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
2016-11-08 16:14:04 +00:00
Leo Famulari
667e777b4e
gnu: mupdf: Fix CVE-2016-{7504,7505,7506,7563,7564,9017,9136} in bundled mujs.
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* gnu/packages/patches/mupdf-CVE-2016-7504.patch,
gnu/packages/patches/mupdf-CVE-2016-7505.patch
gnu/packages/patches/mupdf-CVE-2016-7506.patch
gnu/packages/patches/mupdf-CVE-2016-7563.patch
gnu/packages/patches/mupdf-CVE-2016-7564.patch
gnu/packages/patches/mupdf-CVE-2016-9017.patch
gnu/packages/patches/mupdf-CVE-2016-9136.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
2016-11-08 11:03:14 -05:00
Marius Bakke
81bf2ccbc4
system: Use grub from bootloader configuration.
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* gnu/system/grub.scm (gnu): Export grub-configuration-grub.
* guix/scripts/system.scm (perform-action): Use it.
(define-module): Don't import (gnu packages grub).
Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
2016-11-08 14:35:05 +00:00
Theodoros Foradis
842a1400a7
gnu: Add plantuml.
...
* gnu/packages/uml.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Roel Janssen <roel@gnu.org>
2016-11-08 14:59:04 +01:00
Ludovic Courtès
64b8695cd8
guix download: Add '--no-check-certificate' option.
...
* guix/download.scm (download-to-store): Add #:verify-certificate?
parameter and honor it.
* guix/scripts/download.scm (%default-options): Add
'verify-certificate?' key.
(show-help, %options): Add '--no-check-certificate'.
(guix-download): Pass #:verify-certificate to 'download-to-store'.
* doc/guix.texi (Invoking guix download): Document it.
2016-11-07 23:39:01 +01:00
Ludovic Courtès
bc3c41ce36
download: Verify TLS certificates unless asked not to.
...
Fixes <http://bugs.gnu.org/24466 >.
Reported by Leo Famulari <leo@famulari.name>.
* guix/build/download.scm (%x509-certificate-directory): New variable.
(make-credendials-with-ca-trust-files, peer-certificate)
(assert-valid-server-certificate, print-tls-certificate-error): New
procedures. Add 'print-tls-certificate-error' as an exception printer
for 'tls-certificate-error'.
(tls-wrap): Add #:verify-certificate? parameter and honor it.
(open-connection-for-uri): Likewise.
(http-fetch): Likewise.
(url-fetch): Likewise.
* guix/download.scm (url-fetch)[builder]: Pass #:verify-certificate? #f.
* guix/scripts/lint.scm (probe-uri): Add case for 'tls-certificate-error'.
(validate-uri): Likewise.
* doc/guix.texi (Invoking guix download): Mention 'SSL_CERT_DIR'.
2016-11-07 23:39:01 +01:00
Efraim Flashner
a00fbe8adf
gnu: keepassx: Update to 2.0.3.
...
* gnu/packages/password-utils.scm (keepassx): Update to 2.0.3.
[inputs]: Add libxi.
2016-11-07 21:57:00 +02:00
Efraim Flashner
2523691a22
gnu: owncloud-client: Update to 2.2.4.
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* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.4.
[arguments]: Enable tests, disable two failing tests.
[inputs]: Remove python-wrapper, qt, ruby. Add qtbase, qtwebkit.
Move perl ...
[native-inputs]: ... to here. Add cmocka and qttools.
2016-11-07 21:56:47 +02:00
Danny Milosavljevic
6a686b18e0
gnu: python-sqlalchemy-utils: Mention optional dependencies in description.
...
* gnu/packages/python.scm (python-sqlalchemy-utils,
python2-sqlalchemy-utils)[description]: Mention optional dependencies.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-07 12:49:03 -05:00
Marius Bakke
1581406e23
gnu: Add efibootmgr.
...
* gnu/packages/linux.scm (efibootmgr): New variable.
2016-11-07 12:12:59 +00:00
Marius Bakke
0d74462a5f
gnu: Add efivar.
...
* gnu/packages/linux.scm (efivar): New variable.
2016-11-07 12:12:56 +00:00
