Ricardo Wurmus
|
4106e6ad87
|
gnu: Add r-misc3d.
* gnu/packages/cran.scm (r-misc3d): New variable.
|
2018-11-09 18:04:36 +01:00 |
|
Ricardo Wurmus
|
213e72a18d
|
gnu: Add r-multicool.
* gnu/packages/cran.scm (r-multicool): New variable.
|
2018-11-09 18:04:36 +01:00 |
|
Ricardo Wurmus
|
f338e4807f
|
gnu: Add r-rgl.
* gnu/packages/cran.scm (r-rgl): New variable.
|
2018-11-09 18:04:36 +01:00 |
|
Ricardo Wurmus
|
a961ae469c
|
gnu: Add r-destiny.
* gnu/packages/bioconductor.scm (r-destiny): New variable.
|
2018-11-09 17:15:31 +01:00 |
|
Ricardo Wurmus
|
ff939ef4d5
|
gnu: Add r-h5.
* gnu/packages/cran.scm (r-h5): New variable.
|
2018-11-09 16:57:13 +01:00 |
|
Ricardo Wurmus
|
3a4c6288c8
|
gnu: Add r-aggregation.
* gnu/packages/cran.scm (r-aggregation): New variable.
|
2018-11-09 16:57:13 +01:00 |
|
Ricardo Wurmus
|
8a587c89af
|
gnu: Add r-savr.
* gnu/packages/bioconductor.scm (r-savr): New variable.
|
2018-11-09 16:45:21 +01:00 |
|
Ricardo Wurmus
|
cee9ab244f
|
gnu: r-with-tests: Update to 3.5.1.
* gnu/packages/statistics.scm (r-with-tests): Update to 3.5.1.
|
2018-11-09 14:07:26 +01:00 |
|
Ricardo Wurmus
|
2eaaadb4d6
|
gnu: r-with-tests: Use INVOKE.
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-09 14:07:22 +01:00 |
|
Pierre Neidhardt
|
ddd925f608
|
gnu: Add emacs-gtk-look.
* gnu/packages/emacs.scm (emacs-gtk-look): New variable.
|
2018-11-09 11:55:08 +01:00 |
|
Pierre Neidhardt
|
2cce23bfb8
|
gnu: Add xmlrpc-c.
* gnu/packages/xml.scm (xmlrpc-c): New variable.
|
2018-11-09 11:55:08 +01:00 |
|
Mathieu Othacehe
|
97f33b05ec
|
gnu: guile-newt: Update to revision 1.
* gnu/packages/guile.scm (guile-newt): Update to revision 1.
|
2018-11-09 19:39:14 +09:00 |
|
Ricardo Wurmus
|
1b12b572a5
|
gnu: powertabeditor: Fetch sources from git.
* gnu/packages/music.scm (powertabeditor)[source]: Fetch from git.
|
2018-11-09 08:37:53 +01:00 |
|
Ricardo Wurmus
|
b1b82aed5d
|
gnu: powertabeditor: Use INVOKE.
* gnu/packages/music.scm (powertabeditor)[arguments]: Use INVOKE and return #T
unconditionally.
|
2018-11-09 08:37:53 +01:00 |
|
Kei Kebreau
|
e4b62e229e
|
gnu: wxmaxima: Update to 18.10.1.
* gnu/packages/maths.scm (wxmaxima): Update to 18.10.1.
[source]: Update URL and remove patch.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
|
2018-11-09 01:09:06 -05:00 |
|
Leo Famulari
|
41d2b7f50b
|
gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850].
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
|
2018-11-08 13:42:56 -05:00 |
|
Pierre Neidhardt
|
2705780f3f
|
gnu: Add emacs-clang-format.
* gnu/packages/emacs.scm (emacs-clang-format): New variable.
|
2018-11-08 13:08:26 +01:00 |
|
Efraim Flashner
|
e3407254d5
|
gnu: kodi: Update to 18.0b5.
* gnu/packages/kodi.scm (kodi): Update to 18.0b5.
[source]: Update snippet.
[inputs]: Add flatbuffers, fstrcmp.
(crossguid): Update to commit fef89a4174a7bf8cd99fa9154864ce9e8e3bf989.
(libdvdnav/kodi, libdvdread/kodi): Update to 6.0.0-Leia-Alpha-3.
(libdvdcss/kodi): Update to 1.4.2-Leia-Beta-5.
|
2018-11-08 12:01:24 +02:00 |
|
Efraim Flashner
|
988b78ba28
|
gnu: Add fstrcmp.
* gnu/packages/kodi.scm (fstrcmp): New variable.
|
2018-11-08 12:01:20 +02:00 |
|
Stefan Stefanović
|
ec86863113
|
services: elogind: Fix spelling errors of left value fields in elogind config file.
* gnu/services/desktop.scm (elogind-configuration-file)[ini-file]:
Fix spelling of left value fields:
InhibitDelayMaxSecs, HoldoffTimeoutSecs, IdleActionSeconds, RemoveIpc.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
2018-11-08 10:24:35 +01:00 |
|
Luther Thompson
|
9870b9f7f8
|
gnu: python-ilinkedlist: Update to 0.3.1.
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.3.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
2018-11-08 10:24:26 +01:00 |
|
Vagrant Cascadian
|
195e081b43
|
gnu: Add python-pyelftools.
* gnu/packages/python.scm (python-pyelftools):
New public variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
|
2018-11-08 10:24:22 +01:00 |
|
Ricardo Wurmus
|
69cb939ee7
|
gnu: libmusicbrainz: Use INVOKE.
* gnu/packages/music.scm (libmusicbrainz)[arguments]: Use INVOKE and return #T
unconditionally.
|
2018-11-08 10:17:15 +01:00 |
|
Ricardo Wurmus
|
9ab90ead36
|
gnu: pd: Remove custom autoconf phase.
* gnu/packages/music.scm (pd)[arguments]: Remove custom autoconf phase.
|
2018-11-08 10:14:08 +01:00 |
|
Ricardo Wurmus
|
4e82946888
|
gnu: cmus: Fetch sources from git.
* gnu/packages/music.scm (cmus)[source]: Fetch from git.
|
2018-11-08 10:10:06 +01:00 |
|
Ricardo Wurmus
|
ec618c2005
|
gnu: cmus: Use INVOKE.
* gnu/packages/music.scm (cmus)[arguments]: Use INVOKE and return #T
unconditionally.
|
2018-11-08 10:09:32 +01:00 |
|
Ricardo Wurmus
|
9c30cba431
|
gnu: pcc: Use INVOKE.
* gnu/packages/c.scm (pcc)[arguments]: Use INVOKE and return #T
unconditionally.
|
2018-11-08 10:08:09 +01:00 |
|
Ricardo Wurmus
|
a1e83a9856
|
gnu: pplacer-scripts: Use INVOKE.
* gnu/packages/bioinformatics.scm (pplacer-scripts)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 10:06:35 +01:00 |
|
Ricardo Wurmus
|
ce49fdcce9
|
gnu: roary: Use INVOKE.
* gnu/packages/bioinformatics.scm (roary)[arguments]: Use INVOKE and return #T
unconditionally.
|
2018-11-08 09:58:05 +01:00 |
|
Ricardo Wurmus
|
a9542937c8
|
gnu: seek: Use INVOKE.
* gnu/packages/bioinformatics.scm (seek)[arguments]: Use INVOKE and return #T
unconditionally; patch "gen_tools_am" shebang in "bootstrap" phase.
|
2018-11-08 09:54:22 +01:00 |
|
Ricardo Wurmus
|
9f527c9199
|
gnu: sailfish: Use INVOKE.
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use INVOKE instead of
SYSTEM*.
|
2018-11-08 09:52:46 +01:00 |
|
Ricardo Wurmus
|
86c6928ea3
|
gnu: vsearch: Update to 2.9.1.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.9.1.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: Update.
|
2018-11-08 09:46:42 +01:00 |
|
Ricardo Wurmus
|
15c9609482
|
gnu: sra-tools: Update to 2.9.3.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.3.
[arguments]: Remove build phase patch-away-glibc-conflict.
|
2018-11-08 09:46:05 +01:00 |
|
Ricardo Wurmus
|
b17333414f
|
gnu: plink-ng: Fetch sources from git.
* gnu/packages/bioinformatics.scm (plink-ng)[source]: Fetch from git.
|
2018-11-08 09:30:59 +01:00 |
|
Ricardo Wurmus
|
87408854ec
|
gnu: ncbi-vdb: Update to 2.9.3.
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.3.
|
2018-11-08 09:30:16 +01:00 |
|
Ricardo Wurmus
|
8d3eaa9262
|
gnu: ngs-sdk: Update to 2.9.3.
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.3.
|
2018-11-08 09:29:58 +01:00 |
|
Ricardo Wurmus
|
3da3cedf76
|
gnu: ngs-sdk: Use INVOKE.
* gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 09:15:05 +01:00 |
|
Ricardo Wurmus
|
e78e54d029
|
gnu: emboss: Use INVOKE.
* gnu/packages/bioinformatics.scm (emboss)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 09:14:09 +01:00 |
|
Ricardo Wurmus
|
8b685c4720
|
gnu: taxtastic: Use INVOKE.
* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 09:13:35 +01:00 |
|
Ricardo Wurmus
|
2e2d88539c
|
gnu: sra-tools: Use INVOKE.
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 09:12:43 +01:00 |
|
Ricardo Wurmus
|
179416467f
|
gnu: muscle: Use INVOKE.
* gnu/packages/bioinformatics.scm (muscle)[arguments]: Use INVOKE and
return #T unconditionally.
|
2018-11-08 09:11:38 +01:00 |
|
Ricardo Wurmus
|
0881d62f25
|
gnu: newick-utils: Remove custom autoconf phase.
* gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Remove.
|
2018-11-08 09:10:58 +01:00 |
|
Ricardo Wurmus
|
e35dce0170
|
gnu: mash: Remove custom autoconf phase.
* gnu/packages/bioinformatics.scm (mash)[arguments]: Remove autoconf phase.
|
2018-11-08 09:10:20 +01:00 |
|
Ricardo Wurmus
|
31c41a8cfe
|
gnu: vsearch: Remove custom autogen phase.
* gnu/packages/bioinformatics.scm (vsearch)[arguments]: Remove.
|
2018-11-08 09:04:34 +01:00 |
|
Ricardo Wurmus
|
c527d36f02
|
gnu: java-picard-1.113: Use INVOKE.
* gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Use INVOKE
and return #T unconditionally.
|
2018-11-08 09:02:34 +01:00 |
|
Ricardo Wurmus
|
e438c96558
|
gnu: fraggenescan: Use INVOKE.
* gnu/packages/bioinformatics.scm (fraggenescan)[arguments]: Use INVOKE in
build phases and return #T unconditionally.
|
2018-11-08 08:58:46 +01:00 |
|
Ricardo Wurmus
|
c098c49b3e
|
gnu: sailfish: Fetch sources from git.
* gnu/packages/bioinformatics.scm (sailfish)[source]: Fetch from git.
|
2018-11-08 08:53:54 +01:00 |
|
Ricardo Wurmus
|
4031e7f1ec
|
gnu: ngs-sdk: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ngs-sdk)[source]: Fetch from git.
|
2018-11-08 08:53:53 +01:00 |
|
Ricardo Wurmus
|
6a7d9ee39f
|
gnu: ncbi-vdb: Use INVOKE and end phases on #T.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use INVOKE and
unconditionally end phases with #T.
|
2018-11-08 08:53:53 +01:00 |
|
Ricardo Wurmus
|
3398dfb764
|
gnu: ncbi-vdb: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[source]: Fetch from git.
[arguments]: Add phase to make checkout writable.
|
2018-11-08 08:53:53 +01:00 |
|
Ricardo Wurmus
|
e0f1aa2d2b
|
gnu: tadbit: Fetch sources from git.
* gnu/packages/bioinformatics.scm (tadbit)[source]: Fetch from git.
[version]: Use "2.0.0" instead of "2.0".
|
2018-11-08 08:53:50 +01:00 |
|
Kei Kebreau
|
ed33049cdc
|
gnu: pspp: Update to 1.2.0.
* gnu/packages/statistics.scm (pspp): Update to 1.2.0.
[inputs]: Add spread-sheet-widget.
[native-inputs]: Add autoconf, python-2, and texinfo.
|
2018-11-07 17:46:25 -05:00 |
|
Kei Kebreau
|
e2f36385d3
|
gnu: Add spread-sheet-widget.
* gnu/packages/gtk.scm (spread-sheet-widget): New public variable.
|
2018-11-07 17:46:25 -05:00 |
|
Ricardo Wurmus
|
f3f34b132c
|
gnu: filevercmp: Fetch sources from git.
* gnu/packages/bioinformatics.scm (filevercmp)[source]: Fetch from git.
[arguments]: Add #T to the end of the install phase.
|
2018-11-07 23:17:36 +01:00 |
|
Ricardo Wurmus
|
3b888065da
|
gnu: ritornello: Update to 2.0.1.
* gnu/packages/bioinformatics.scm (ritornello): Update to 2.0.1.
[arguments]: Adjust file patching.
|
2018-11-07 23:17:36 +01:00 |
|
Ricardo Wurmus
|
7145f4e519
|
gnu: ritornello: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ritornello)[source]: Fetch from git.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
e0a8fc85dd
|
gnu: snap-aligner: Fetch sources from git.
* gnu/packages/bioinformatics.scm (snap-aligner)[source]: Fetch from git.
[arguments]: Use INVOKE.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
6236524409
|
gnu: sortmerna: Fetch sources from git.
* gnu/packages/bioinformatics.scm (sortmerna)[source]: Fetch from git.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
273df99d7d
|
gnu: vsearch: Fetch source from git.
* gnu/packages/bioinformatics.scm (vsearch)[source]: Fetch from git.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
67caa4b773
|
gnu: preseq: Update to 2.0.3.
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.3.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
37e285be43
|
gnu: preseq: Fetch sources from git.
* gnu/packages/bioinformatics.scm (preseq)[source]: Fetch from git.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
63f3255e13
|
gnu: seqtk: Update to 1.3.
* gnu/packages/bioinformatics.scm (seqtk): Update to 1.3.
[source]: Remove outdated snippet.
[arguments]: Use INVOKE and return #T unconditionally.
|
2018-11-07 23:17:35 +01:00 |
|
Ricardo Wurmus
|
019fcdf20a
|
gnu: seqtk: Fetch sources from git.
* gnu/packages/bioinformatics.scm (seqtk)[source]: Fetch from git.
|
2018-11-07 23:17:34 +01:00 |
|
Ricardo Wurmus
|
b9d0c3564b
|
gnu: raxml: Update to 8.2.12.
* gnu/packages/bioinformatics.scm (raxml): Update to 8.2.12.
|
2018-11-07 23:17:34 +01:00 |
|
Ricardo Wurmus
|
d9ba126d17
|
gnu: python2-biom-format: Fix build.
This is a follow-up to commit 239716fb0b.
* gnu/packages/bioinformatics.scm (python2-biom-format)[arguments]: Modify
phases of base package.
|
2018-11-07 23:17:34 +01:00 |
|
Ricardo Wurmus
|
4715d4af17
|
gnu: raxml: Fetch sources from git.
* gnu/packages/bioinformatics.scm (raxml)[source]: Fetch from git.
|
2018-11-07 23:17:34 +01:00 |
|
Ricardo Wurmus
|
5e242b02c3
|
gnu: pyicoteo: Fetch sources from git.
* gnu/packages/bioinformatics.scm (pyicoteo)[source]: Fetch from git.
|
2018-11-07 23:17:34 +01:00 |
|
Efraim Flashner
|
b44b1f08f6
|
gnu: hplip: Remove bundled non-free blobs.
This fixes <https://bugs.gnu.org/32184>.
* gnu/packages/cups.scm (hplip)[source]: Add patch. Update snippet to
remove non-free code and binary blobs.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
|
2018-11-07 23:16:02 +02:00 |
|
Ricardo Wurmus
|
2b773a9273
|
gnu: sra-tools: Fetch sources from git.
* gnu/packages/bioinformatics.scm (sra-tools)[source]: Fetch from git.
|
2018-11-07 21:41:56 +01:00 |
|
Ricardo Wurmus
|
55698df260
|
gnu: libgff: Fetch sources from git.
* gnu/packages/bioinformatics.scm (libgff)[source]: Fetch from git.
|
2018-11-07 21:41:56 +01:00 |
|
Ricardo Wurmus
|
4257c10ad2
|
gnu: kentutils: Fetch sources from git.
* gnu/packages/bioinformatics.scm (kentutils)[source]: Fetch from git.
[arguments]: Add phase "fix-permissions".
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
1a20bcadf3
|
gnu: r-seqgl: Fetch sources from git.
* gnu/packages/bioinformatics.scm (r-seqgl)[source]: Fetch from git.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
a2b9d6a8d0
|
gnu: pplacer: Fetch sources from git.
* gnu/packages/bioinformatics.scm (pplacer)[source]: Fetch from git.
[arguments]: Make files writable; use INVOKE.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
6052264b56
|
gnu: minced: Update to 0.3.2.
* gnu/packages/bioinformatics.scm (minced): Update to 0.3.2.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
9d94ca0ebf
|
gnu: minced: Fetch sources from git.
* gnu/packages/bioinformatics.scm (minced)[source]: Fetch from git.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
b58d9e4aa2
|
gnu: metabat: Fetch sources from git.
* gnu/packages/bioinformatics.scm (metabat)[source]: Fetch from git.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
5c1f35e71b
|
gnu: mash: Update to 2.1.
* gnu/packages/bioinformatics.scm (mash): Update to 2.1.
|
2018-11-07 21:41:55 +01:00 |
|
Ricardo Wurmus
|
497fc04d8f
|
gnu: mash: Fetch sources from git.
* gnu/packages/bioinformatics.scm (mash)[source]: Fetch from git.
|
2018-11-07 21:41:55 +01:00 |
|
Marius Bakke
|
b31e156161
|
gnu: fio: Update to 3.11.
* gnu/packages/benchmark.scm (fio): Update to 3.11.
[source]: Use bz2 compressed tarball.
|
2018-11-07 21:09:00 +01:00 |
|
Ricardo Wurmus
|
2dc28391f3
|
gnu: kaiju: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.3.
|
2018-11-07 20:47:22 +01:00 |
|
Ricardo Wurmus
|
6fe323bf2e
|
gnu: kaiju: Fetch sources from git.
* gnu/packages/bioinformatics.scm (kaiju)[source]: Fetch from git.
[arguments]: Remove redundant installation step.
|
2018-11-07 20:46:36 +01:00 |
|
Ricardo Wurmus
|
f0731591a5
|
gnu: idr: Fetch sources from git.
* gnu/packages/bioinformatics.scm (idr)[source]: Fetch from git.
|
2018-11-07 20:41:58 +01:00 |
|
Ricardo Wurmus
|
b8a6230df3
|
gnu: java-htsjdk: Fetch sources from git.
* gnu/packages/bioinformatics.scm (java-htsjdk)[source]: Fetch from git.
|
2018-11-07 20:36:07 +01:00 |
|
Ricardo Wurmus
|
57be690d91
|
gnu: hisat2: Use versioned source URL.
* gnu/packages/bioinformatics.scm (hisat2)[source]: Use versioned URL.
|
2018-11-07 20:32:29 +01:00 |
|
Ricardo Wurmus
|
c8f02c1dcb
|
gnu: grit: Update to 2.0.5.
* gnu/packages/bioinformatics.scm (grit): Update to 2.0.5.
[arguments]: Simplify.
|
2018-11-07 20:30:44 +01:00 |
|
Ricardo Wurmus
|
8d75adbf03
|
gnu: grit: Fetch sources from git.
* gnu/packages/bioinformatics.scm (grit)[source]: Fetch from git.
|
2018-11-07 20:27:10 +01:00 |
|
Ricardo Wurmus
|
152bebd9e0
|
gnu: gemma: Update to 0.98.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/patches/gemma-intel-compat.patch: Remove file.
* gnu/packages/bioinformatics.scm (gemma): Update to 0.98.
[source]: Remove patch.
[inputs]: Add eigen, gfortran:lib, and openblas.
[arguments]: Add phase "find-eigen".
|
2018-11-07 20:26:46 +01:00 |
|
Ricardo Wurmus
|
b113f39019
|
gnu: gemma: Fetch sources from git.
* gnu/packages/bioinformatics.scm (gemma)[source]: Fetch from git.
|
2018-11-07 20:26:45 +01:00 |
|
Pierre Langlois
|
f09e8abc5e
|
gnu: clementine: Build with sqlite-with-column-metadata.
* gnu/packages/music.scm (clementine)[inputs]: Use sqlite-with-column-metadata.
Signed-off-by: Leo Famulari <leo@famulari.name>
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2018-11-07 14:25:07 -05:00 |
|
Ricardo Wurmus
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91b71cfbba
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gnu: fxtract: Fetch sources from git.
* gnu/packages/bioinformatics.scm (fxtract)[source]: Fetch from git.
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2018-11-07 19:55:50 +01:00 |
|
Ricardo Wurmus
|
7ca49ab57a
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gnu: ribodiff: Fetch sources from git.
* gnu/packages/bioinformatics.scm (ribodiff)[source]: Fetch from git.
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2018-11-07 19:48:21 +01:00 |
|
Ricardo Wurmus
|
239716fb0b
|
gnu: python-biom-format: Update to 2.1.7.
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.7.
[arguments]: Add phases "use-cython", "disable-broken-test", and
"make-files-writable".
[propagated-inputs]: Add python-flake8.
[native-inputs]: Add python-cython, python-pytest, and python-pytest-cov.
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2018-11-07 19:47:07 +01:00 |
|
Ricardo Wurmus
|
007a81d5cf
|
gnu: python-biom-format: Fetch source from git.
* gnu/packages/bioinformatics.scm (python-biom-format)[source]: Fetch from
git.
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2018-11-07 19:10:36 +01:00 |
|
Ricardo Wurmus
|
383cb7b8e6
|
gnu: bioawk: Fetch sources from git.
* gnu/packages/bioinformatics.scm (bioawk)[source]: Fetch from git.
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2018-11-07 19:06:30 +01:00 |
|
Ricardo Wurmus
|
20ee3e8b76
|
gnu: bedtools-2.18: Fetch sources from stable URL.
* gnu/packages/bioinformatics.scm (bedtools-2.18)[source]: Use stable release
tarball instead of generated tag tarball.
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2018-11-07 18:52:46 +01:00 |
|
Ricardo Wurmus
|
8e58319c45
|
gnu: bamtools: Fetch sources from git.
* gnu/packages/bioinformatics.scm (bamtools)[source]: Fetch from git.
|
2018-11-07 18:44:30 +01:00 |
|
Ricardo Wurmus
|
21335fdbec
|
gnu: ngless: Install links to required tools.
* gnu/packages/bioinformatics.scm (ngless)[arguments]: Install links to tools.
[inputs]: Add prodigal, bwa, samtools, and minimap2.
|
2018-11-07 17:19:53 +01:00 |
|
Ricardo Wurmus
|
fff67cc8a7
|
gnu: prodigal: Fetch sources from git.
* gnu/packages/bioinformatics.scm (prodigal)[source]: Fetch from git.
|
2018-11-07 17:19:53 +01:00 |
|
Ludovic Courtès
|
dcb45127e0
|
services: cuirass: Add 'ttl' configuration field.
* gnu/services/cuirass.scm (<cuirass-configuration>)[ttl]: New field.
(cuirass-shepherd-service): Honor it.
|
2018-11-07 16:06:42 +01:00 |
|
Ludovic Courtès
|
08759829cf
|
gnu: cuirass: Update to 0b40dca.
* gnu/packages/ci.scm (cuirass): Update to 0b40dca.
|
2018-11-07 16:06:42 +01:00 |
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