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Author SHA1 Message Date
Marius Bakke
522f199562
gnu: perl-xml-atom: Update to 0.42. 
* gnu/packages/xml.scm (perl-xml-atom): Update to 0.42.
[arguments]: Add 'set-perl-search-path' phase.
[native-inputs]: Add PERL-HTML-TAGSET and PERL-MODULE-BUILD-TINY.
 2017-08-27 15:07:21 +02:00
Marius Bakke
9978567460
gnu: babl: Update to 0.1.30. 
* gnu/packages/gimp.scm (babl): Update to 0.1.30.
 2017-08-27 15:07:21 +02:00
Marius Bakke
b45c050545
gnu: Remove unneeded import. 
* gnu/packages/engineering.scm: Don't import (srfi srfi-1) in top scope.
 2017-08-27 15:07:21 +02:00
Marius Bakke
fab46af832
gnu: tdb: Update to 1.3.15. 
* gnu/packages/databases.scm (tdb): Update to 1.3.15.
 2017-08-27 15:07:21 +02:00
Efraim Flashner
6909c24093
gnu: enlightenment: Update to 0.21.9. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.9.
 2017-08-27 15:53:13 +03:00
Kei Kebreau
ab11563797
gnu: xauth: Enable tests. 
* gnu/packages/xorg.scm (xauth)[arguments]: Enable tests.
[native-inputs]: Add cmdtest.
 2017-08-26 15:40:55 -04:00
Kei Kebreau
cd669fdeb1
gnu: Add cmdtest. 
* gnu/packages/check.scm (cmdtest): New variable.

Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-08-26 15:26:45 -04:00
Marius Bakke
72e2815d18
Merge branch 'core-updates' 2017-08-26 15:15:49 +02:00
Andy Wingo
c20cd0d24d
gnu: gnome: Depend on xdg-user-dirs. 
* gnu/packages/gnome.scm (gnome): Add xdg-user-dirs dependency.  The presence
  of the autostart file in /run/current-system/profile/etc/xdg should cause
  xdg-user-dirs to be run when a user logs in, ensuring that they have
  ~/Pictures and other well-known user directories.
 2017-08-26 13:37:30 +02:00
Andy Wingo
b9bf08f058
gnu: Add xdg-user-dirs. 
* gnu/packages/freedesktop.scm (xdg-user-dirs): New public variable.
 2017-08-26 13:37:19 +02:00
Julien Lepiller
446695775d
gnu: Add radare2. 
* gnu/packages/engineering.scm (radare2): New variable.
 2017-08-26 13:01:36 +02:00
Julien Lepiller
f70be0113f
gnu: Add python-capstone. 
* gnu/packages/engineering.scm (python-capstone, python2-capstone): New
variables.
 2017-08-26 13:01:32 +02:00
Julien Lepiller
6febda9443
gnu: Add capstone. 
* gnu/packages/engineering.scm (capstone): New variable.
 2017-08-26 13:01:11 +02:00
Oleg Pykhalov
d987a006dc
gnu: youtube-dl: Update to 2017.08.23. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.23.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-08-26 13:35:44 +05:30
宋文武
acf7a958a6
gnu: pv: Update to 1.6.6. 
* gnu/packages/pv.scm (pv): Update to 1.6.6.
 2017-08-26 14:09:05 +08:00
Mark H Weaver
828f0109ee
gnu: linux-libre: Update to 4.12.9. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.9.
(%linux-libre-hash): Update hash.
 2017-08-25 23:53:32 -04:00
Mark H Weaver
50e34c608e
gnu: linux-libre@4.9: Update to 4.9.45. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.45.
 2017-08-25 23:52:58 -04:00
Mark H Weaver
cd2247cccd
gnu: linux-libre@4.4: Update to 4.4.84. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.84.
 2017-08-25 23:52:14 -04:00
Marius Bakke
2f837cf7fe
gnu: perl: Add more missing dependencies on Module::Install. 
* gnu/packages/databases.scm (perl-dbix-class, perl-dbix-class-cursor-cached,
  perl-dbix-class-introspectablem2m,
  perl-dbix-class-schema-loader)[native-inputs]: Add PERL-MODULE-INSTALL.
* gnu/packages/web.scm (perl-catalyst-action-renderview,
  perl-catalyst-action-rest, perl-catalyst-authentication-store-dbix-class,
  perl-catalyst-component-instancepercontext, perl-catalyst-model-dbic-schema,
  perl-catalyst-plugin-authentication,
  perl-catalyst-plugin-authorization-roles, perl-catalyst-plugin-configloader,
  perl-catalyst-plugin-session, perl-catalyst-plugin-session-state-cookie,
  perl-catalyst-plugin-stacktrace, perl-catalyst-plugin-static-simple,
  perl-catalyst-traitfor-request-proxybase, perl-catalyst-view-download,
  perl-catalyst-view-json, perl-catalystx-script-server-starman,
  perl-test-www-mechanize, perl-test-www-mechanize-catalyst)[native-inputs]:
  Likewise.
* gnu/packages/xorg.scm (perl-x11-xcb)[native-inputs]: Likewise.
 2017-08-25 22:24:10 +02:00
Marius Bakke
a21db79e52
gnu: perl-catalyst-runtime: Update to 5.90115. 
* gnu/packages/web.scm (perl-catalyst-runtime): Update to 5.90115.
[native-inputs]: Add PERL-MODULE-INSTALL.
 2017-08-25 22:23:53 +02:00
Leo Famulari
35131babc1
gnu: go: Update to 1.9. 
* gnu/packages/golang.scm (go-1.8): Replace with ...
(go-1.9): ... new variable.
[arguments]: Adjust the pre-build phase accordingly.
 2017-08-25 12:28:58 -04:00
Andy Wingo
e0e6756fbd
gnu: gdm: Fix environment of worker processes and sessions. 
* gnu/packages/gnome.scm (gdm): Get X server path from GDM_X_SERVER
environment variable, and make sure this variable is propagated to internal
sub-processes.  Launch sessions with a reasonable XDG_CONFIG_DIRS setting.
Get the custom GDM conf from the current system's profile.
 2017-08-25 16:01:56 +02:00
Andy Wingo
957dbc0a4d
gnu: gdm: Use proper elogind check, and wrap environment. 
* gnu/packages/gnome.scm (gdm): Use glib-or-gtk-build-system to make sure the
schemas are available to GDM.  Install gdm to /bin to make this happen.  Use a
proper elogind check.
 2017-08-25 16:01:56 +02:00
Andy Wingo
af37e6bbd4
gnu: gdm: Look for sessions in /run/current-system. 
* gnu/packages/gnome.scm (gdm): Fix search paths for system sessions.  Use
  /var as localstatedir.  Set a more sensible default path for user sessions.
 2017-08-25 16:01:56 +02:00
Andy Wingo
e76008dbc8
gnu: accountsservice: Properly reference shadow. 
* gnu/packages/freedesktop.scm (accountsservice): Fix references to binaries
  provided by the shadow package.
 2017-08-25 16:01:45 +02:00
Efraim Flashner
cb8b14f182
gnu: parallel: Update to 20170822. 
* gnu/packages/parallel.scm (parallel): Update to 20170822.
 2017-08-25 09:15:12 +03:00
Mark H Weaver
1934769ba1
gnu: libmikmod: Add fallback source URL, needed for older versions. 
* gnu/packages/sdl.scm (libmikmod)[source]: Add a fallback source URL where
older versions are kept.
 2017-08-25 02:08:52 -04:00
Ricardo Wurmus
0b4f40e4fa
gnu: yoshimi: Update to 1.5.3. 
* gnu/packages/music.scm (yoshimi): Update to 1.5.3.
 2017-08-25 04:55:05 +02:00
Ricardo Wurmus
5cff549c60
gnu: zynaddsubfx: Update to 3.0.2. 
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.2.
 2017-08-25 04:51:07 +02:00
Ricardo Wurmus
44aca1a3e5
gnu: guile-xcb: Update source URL. 
* gnu/packages/guile-wm.scm (guile-xcb)[source]: Use archived tarball URL.
 2017-08-25 02:15:14 +02:00
Ludovic Courtès
649c438c23
gnu: font-mathjax: Move to javascript.scm. 
This avoids cross-module top-level references.

* gnu/packages/fonts.scm (font-mathjax): Move to...
* gnu/packages/javascript.scm (font-mathjax): ... here.  New variable.
 2017-08-24 23:55:51 +02:00
Ludovic Courtès
87f057c46e
gnu: font-go: Remove reference to 'go-1.4'. 
This avoids circular references at the top level.

* gnu/packages/fonts.scm (font-go)[license]: Remove reference to
GO-1.4.
 2017-08-24 23:55:51 +02:00
Stefan Reichör
84342e2fa9
gnu: Add honcho. 
* gnu/packages/python.scm (python-honcho, python2-honcho): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-24 21:27:23 +02:00
Marius Bakke
a251838d67
gnu: maim: Update to 5.4.68. 
* gnu/packages/xdisorg.scm (maim): Update to 5.4.68.
 2017-08-24 21:21:04 +02:00
Marius Bakke
8752fa6cba
gnu: slop: Update to 7.3.49. 
* gnu/packages/xdisorg.scm (slop): Update to 7.3.49.
 2017-08-24 21:21:04 +02:00
Ricardo Wurmus
3f8efbb9a4
gnu: guile-wm: Update source URL. 
* gnu/packages/guile-wm.scm (guile-wm)[source]: Use archived URL.
 2017-08-24 20:42:45 +02:00
Thomas Danckaert
17e56dac12
gnu: libreoffice: Fix icons, enable liblangtag. 
* gnu/packages/libreoffice.scm (libreoffice) [inputs]: Add liblangtag.
  [arguments]: Correct icon names in .desktop files; copy desktop files &
  icons for libreoffice-math and libreoffice-startcenter; enable parallel
  build; enable liblangtag.
 2017-08-24 19:52:16 +02:00
Tobias Geerinckx-Rice
5cdb0cd380
gnu: dovecot: Update to 2.2.32. 
* gnu/packages/mail.scm (dovecot): Update to 2.2.32.
 2017-08-24 16:38:47 +02:00
Efraim Flashner
5fc9b6c108
gnu: lollypop: Use pseudo meson build system. 
* gnu/packages/gnome.scm (lollypop)[arguments]: Disable tests. Delete
configure phase, replace build and install phase with custom phases.
[native-inputs]: Add ninja.
[propagated-inputs]: Move gst-plugins-base ...
[inputs]: ... to here. Add meson.
 2017-08-24 15:33:13 +03:00
Hartmut Goebel
e3c13d044f
gnu: libksysguard: Enable more tests (not all working yet). 
* gnu/packages/kde.scm (libksysguard)[arguments]
  <#:phases>'check-setup': Set QT_QPA_PLATFORM=offscreen.
  <#:phases>'check': Enable all tests except of the failing one.
 2017-08-24 12:32:34 +02:00
Arun Isaac
2d6da7942a
gnu: python2-ttystatus: Update to 0.35. 
* gnu/packages/python.scm (python2-ttystatus): Update to 0.35.
 2017-08-24 14:28:41 +05:30
Arun Isaac
f6c5821530
gnu: cliapp: Update to 1.20170823. 
* gnu/packages/python.scm (python2-cliapp): Update to 1.20170823.
 2017-08-24 14:20:45 +05:30
Efraim Flashner
c47048c328
gnu: datamash: Update to 1.2. 
* gnu/packages/datamash.scm (datamash): Update to 1.2.
 2017-08-24 10:35:00 +03:00
Efraim Flashner
f81039058c
gnu: qemu: Fix CVE-2017-12809. 
* gnu/packages/virtualization.scm (qemu)[source]: Add patch.
* gnu/packages/patches/qemu-CVE-2017-12809.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-23 21:56:55 +03:00
Efraim Flashner
f00e328fd3
gnu: openjpeg: Fix CVE-2017-12982. 
* gnu/packages/image.scm (openjepg)[source]: Add patch.
* gnu/packages/patches/openjpeg-CVE-2017-12982.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-23 21:07:07 +03:00
Ricardo Wurmus
d7eea7d7ae
gnu: python-scikit-learn: Update to 0.19.0. 
* gnu/packages/python.scm (python-scikit-learn): Update to 0.19.0.
 2017-08-23 17:31:54 +02:00
Rutger Helling
cc527b5048
gnu: xpra: Update to 2.1.1. 
* gnu/packages/xorg.scm (xpra): Update to 2.1.1.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-08-23 20:38:09 +08:00
Rutger Helling
8a7f958ed9
gnu: higan: Update to 104. 
* gnu/packages/games.scm (higan): Update to 104.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-08-23 20:24:15 +08:00
Rutger Helling
56cdca9537
gnu: retroarch: Update to 1.6.7. 
* gnu/packages/games.scm (retroarch): Update to 1.6.7.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-08-23 20:13:41 +08:00
Thomas Danckaert
35e657017c
gnu: id3lib: Remove bundled zlib. 
* gnu/packages/mp3.scm (id3lib)[source]: Remove bundled zlib.
[inputs]: Add zlib.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-08-23 19:58:26 +08:00
Christopher Baines
903e051a71
gnu: libvirt: Wrap with iproute and qemu. 
libvirtd runs qemu if it's configured to use it, and also uses the ip command.

* gnu/packages/virtualization.scm (libvirt)[arguments]: Add wrap-libvirtd
  phase.
 2017-08-23 12:44:21 +01:00
Christopher Baines
0577a3fd92
gnu: Build the shared library for yaml-cpp. 
* gnu/packages/serialization.scm (yaml-cpp)[arguments]: Add
  -DBUILD_SHARED_LIBS=ON to #:configure-flags.
 2017-08-23 10:07:22 +01:00
Marius Bakke
4e58740aff
gnu: whois: Update to 5.2.18. 
* gnu/packages/networking.scm (whois): Update to 5.2.18.
 2017-08-22 23:17:14 +02:00
Marius Bakke
2e4569829e
gnu: Add f2fs-tools. 
* gnu/packages/linux.scm (f2fs-tools): New variable.
 2017-08-22 23:13:42 +02:00
Marius Bakke
7ac2cab8c9
gnu: Add icedtea-web. 
* gnu/packages/java.scm (icedtea-web): New variable.
 2017-08-22 23:02:13 +02:00
ng0
77a0354a36
gnu: gnurl: Update to 7.55.1-3. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.1-3.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-08-22 21:52:05 +02:00
Ricardo Wurmus
bd3a184613
gnu: r-minimal: Do not compress serialized files. 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.

Fixes <https://bugs.gnu.org/28157>.
 2017-08-22 16:24:24 +02:00
Ricardo Wurmus
6be54a8751
gnu: Add rmath-standalone. 
* gnu/packages/statistics.scm (rmath-standalone): New variable.
 2017-08-22 16:24:24 +02:00
Efraim Flashner
94b179c675
gnu: gst-plugins-bad: Build with wayland support. 
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add wayland.
 2017-08-22 17:04:39 +03:00
Efraim Flashner
fe535d81ae
gnu: libraw: Update to 0.18.2. 
* gnu/packages/photo.scm (libraw): Update to 0.18.2.
[source, home-page]: Use https.
 2017-08-22 16:57:59 +03:00
Z. Ren
0e4d822e3f
gnu: skalibs: Build reproducibly. 
* gnu/packages/skarnet.scm (skalibs)[arguments]: Add #:phases.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-22 15:19:49 +02:00
Ludovic Courtès
c15374e03d
gnu: libjpeg-turbo: Build reproducibly. 
* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add #:configure-flags.

Co-authored-by: Z. Ren <zren@dlut.edu.cn>
 2017-08-22 15:19:49 +02:00
Thomas Danckaert
1206c95a49
gnu: python-netcdf4: Update to 1.2.9. 
* gnu/packages/python.scm (python-netcdf4): Update to 1.2.9.
 2017-08-22 09:02:32 +02:00
Thomas Danckaert
5c78db6222
gnu: python-h5py: Update to 2.7.0. 
* gnu/packages/python.scm (python-h5py): Update to 2.7.0.
 2017-08-22 09:02:24 +02:00
Efraim Flashner
285e18e9ae
gnu: terminology: Update to 1.1.0. 
* gnu/packages/enlightenment.scm (terminology): Update to 1.1.0.
[source]: Remove bundled fonts and references to them.
[native-inputs]: Add gettext-minimal.
 2017-08-22 09:49:27 +03:00
Oleg Pykhalov
61b31ac46f
gnu: Update emacs-rainbow-mode to 0.13. 
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 0.13.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-22 00:00:56 +02:00
Oleg Pykhalov
86a9b1633c
gnu: python-internetarchive: Update to 1.7.1. 
* gnu/packages/web.scm (python-internetarchive): Update to 1.7.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-22 00:00:56 +02:00
Tobias Geerinckx-Rice
58f3d45996
gnu: python-marshmallow: Update to 3.0.0b3. 
* gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b3.
 2017-08-21 22:54:38 +02:00
Tobias Geerinckx-Rice
4ecab114fd
gnu: python-pylast: Update to 1.9.0. 
* gnu/packages/python.scm (python-pylast): Update to 1.9.0.
 2017-08-21 22:54:38 +02:00
Tobias Geerinckx-Rice
3592a57255
gnu: lollypop: Update to 0.9.244. 
* gnu/packages/gnome.scm (lollypop): Update to 0.9.244.
 2017-08-21 22:54:37 +02:00
Tobias Geerinckx-Rice
9f9d2a723f
gnu: gspell: Update to 1.4.2. 
* gnu/packages/gnome.scm (gspell): Update to 1.4.2.
 2017-08-21 22:54:37 +02:00
Marius Bakke
3ce16aeac5
gnu: imagemagick: Update to 6.9.9-9. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-9.
 2017-08-21 22:48:44 +02:00
Marius Bakke
51eecee7b9
gnu: feh: Update to 2.19.3. 
* gnu/packages/image-viewers.scm (feh): Update to 2.19.3.
 2017-08-21 22:48:44 +02:00
Tobias Geerinckx-Rice
88648855f8
gnu: perl-net-dns: Update to 1.12. 
* gnu/packages/networking.scm (perl-net-dns): Update to 1.12.
 2017-08-21 17:38:08 +02:00
Tobias Geerinckx-Rice
46057c0a3f
gnu: zstd: Update to 1.3.1. 
* gnu/packages/compression.scm (zstd): Update to 1.3.1.
 2017-08-21 17:38:07 +02:00
Dave Love
6c171ff47c
gnu: openmpi: Configure without vampirtrace. 
VT is obsoleted by scorep (not currently packaged) and disabling it reduces
the closure considerably.

* mpi.scm (openmpi)[arguments]: Configure without vampirtrace.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:54 +02:00
Dave Love
df981d8b36
gnu: openmpi: Modify configuration to reduce closure. 
devel-headers are only for building MCA components, produce a large
closure and aren't normally packaged.  Only the affinity component of
mpi-ext is useful.

* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure
--with-devel-headers and --enable-mpi-ext=all.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:54 +02:00
Dave Love
0d97d3cbff
gnu: openmpi: Remove references to compiler pathnames in "_info" programs. 
This reduces the closure greatly, but note that the Fortran .mod files are
gfortran version-specific, so there should probably be development packages
for each incompatible version.  (The runtime is supposed to be more-or-less
version-independent unless the libgfortran soname changes.)  There may still
be a case for a separate runtime output.

* gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:54 +02:00
Dave Love
84bf845abc
gnu: valgrind: Add separate "doc" output. 
* gnu/packages/valgrind.scm (valgrind)[outputs]: New field.
[arguments]: Add 'install-doc' phase.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2017-08-21 17:04:54 +02:00
Dave Love
327404aeaa
gnu: openmpi: Remove "static" output. 
--enable-static removes dynamically-loaded MCA components.

* gnu/packages/mpi.scm (openmpi)[outputs]: Remove field.
[arguments]: Don't configure with --enable-static; remove
'move-static-libraries' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:54 +02:00
Dave Love
685bef2bd1
gnu: openmpi: Add separate variant with thread-multiple support. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove
"--enable-mpi-thread-multiple".
(openmpi-thread-multiple): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2017-08-21 17:04:54 +02:00
Theodoros Foradis
cf684d87d7
gnu: z3: Build Python bindings. 
* gnu/packages/maths.scm (z3): Add python bindings.
[build-system]: Change to cmake-build-system.
[arguments]: Remove "changedir" phase.  Add "bootstrap" and
"make-test-z3" phases; replace the "check" phase.
Add #:configure-flags.  Remove #:test-target.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-21 17:04:53 +02:00
Efraim Flashner
bd2e321061
gnu: augeas: Update to 1.8.1. Fixes CVE-2017-7555. 
* gnu/packages/augeas.scm (augeas): Update to 1.8.1.
 2017-08-21 16:02:23 +03:00
Marius Bakke
2718a9cd09
Merge branch 'master' into core-updates 2017-08-21 02:40:37 +02:00
ng0
e904de7ec1
gnu: gnurl: Update to 7.55.1. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-08-21 01:05:06 +02:00
Efraim Flashner
1dbd34329b
gnu: vifm: Update to 0.9. 
* gnu/packages/vim.scm (vifm): Update to 0.9.
[source]: Add alternate uri.
[arguments]: Remove build timestamp. Add phase to install vim plugins
into vim plugin directory. Patch more shebangs.
 2017-08-20 23:23:17 +03:00
Efraim Flashner
bda6c35093
gnu: pspp: Update to 1.0.0. 
* gnu/packages/statistics.scm (pspp): Update to 1.0.0.
 2017-08-20 21:44:47 +03:00
Marius Bakke
9c4ce3afac
gnu: perl-test-trap: Update to 0.3.2. 
* gnu/packages/perl.scm (perl-test-trap): Update to 0.3.2.
[source, version]: Remove 'v' prefix from version field.
 2017-08-20 17:33:16 +02:00
Marius Bakke
7295a0c020
gnu: perl-test-trap: Add missing dependency on Test::Simple. 
* gnu/packages/perl.scm (perl-test-trap)[native-inputs]: Add PERL-TEST-SIMPLE.
 2017-08-20 17:33:16 +02:00
Tobias Geerinckx-Rice
29a3325708
gnu: bundler: Update to 1.15.4. 
* gnu/packages/ruby.scm (bundler): Update to 1.15.4.
 2017-08-20 16:41:39 +02:00
Tobias Geerinckx-Rice
3fa1b08213
gnu: limnoria: Update to 2017.08.18. 
* gnu/packages/irc.scm (limnoria): Update to 2017.08.18.
 2017-08-20 16:41:39 +02:00
Kei Kebreau
6d7d9d9507
gnu: graphicsmagick: Fix CVE-2017-{12935,12936,12937}. 
* gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Use them.
 2017-08-20 08:35:45 -04:00
Ricardo Wurmus
a8cd352304
gnu: r-minimal: Work around failure to embed reference to "which". 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add phase "patch-which".
[native-inputs]: Move "which" from here...
[propagated-inputs]: ...to here.
 2017-08-20 14:00:04 +02:00
Ricardo Wurmus
92a1cb9285
gnu: powertabeditor: Update to 2.0.0-alpha10. 
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha10.
[arguments]: Remove "set-target-directories" phase; disable additional tests.
 2017-08-20 14:00:04 +02:00
Ricardo Wurmus
17cddc1714
gnu: Add r-annotationfilter. 
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
 2017-08-20 14:00:04 +02:00
Andy Wingo
96d36f385c
gnu: Add gnome-default-applications. 
* gnu/packages/gnome.scm (gnome-default-applications): New public variable.
(gnome): Propagate gnome-default-applications so that nautilus is associated
with folders, not baobab.
 2017-08-20 13:11:06 +02:00
Andy Wingo
a9dbefdc9d
gnu: gnome: Propagate font-dejavu. 
* gnu/packages/gnome.scm (gnome): Add font-dejavu to propagated inputs, to
  provide a better default for "Monospace".  Otherwise the terminal looks
  horrible and defaults to Nimbus Mono, a Courier-like face.
 2017-08-20 13:10:56 +02:00
Andy Wingo
50631fe933
gnu: gobby: Re-add Gobby 0.4. 
* gnu/packages/gobby.scm (gobby-0.4): New variable.
 2017-08-20 11:30:43 +02:00
Andy Wingo
63ad9b80c7
gnu: gnome: Propagate more packages. 
* gnu/packages/gnome.scm (gnome): Add additional dependencies, inspired by
  Debian's "gnome-core" package.
 2017-08-20 11:16:56 +02:00
Arun Isaac
97291c0c7c
gnu: gobby: Update to 0.5.0. 
* gnu/packages/gobby.scm (gobby): Update to 0.5.0.
[inputs]: Remove libnet6 and obby. Add libinfinity. Sort.
[arguments]: Add move-executable phase.
 2017-08-20 10:52:56 +05:30
Arun Isaac
6a84ec8eb3
gnu: Add libinfinity. 
* gnu/packages/gobby.scm (libinfinity): New variable.
 2017-08-20 10:52:55 +05:30
Leo Famulari
36ed934dfe
gnu: icedtea@3: Update to 3.5.1. 
* gnu/packages/java.scm (icedtea-8): Update to 3.5.1.
 2017-08-19 18:50:04 -04:00
Leo Famulari
0c2e2b660d
gnu: icedtea@2: Update to 2.6.11 [security fixes]. 
Fixes CVE-2017-{10053,10067,10074,10081,10087,10089,10090,10096,10101,10102,
10107,10108,10109,10110,10111,10115,10116,10118,10135,10074,10176}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.11.
 2017-08-19 18:50:01 -04:00
Thomas Danckaert
7b87132f6e
gnu: libreoffice: Update to 5.3.5.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.5.2.
 2017-08-19 22:46:03 +02:00
Efraim Flashner
128c9b9269
gnu: perl-www-mechanize: Update source uri. 
* gnu/packages/web.scm (perl-www-mechanize)[source]: Update to new uri.
 2017-08-19 21:52:22 +03:00
Marius Bakke
7eb09e39ed
gnu: perl-net-server: Update to 2.009. 
* gnu/packages/web.scm (perl-net-server): Update to 2.009.
 2017-08-19 16:43:38 +02:00
Marius Bakke
68d5906c06
gnu: perl-www-mechanize: Update to 1.86. 
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.86.
[native-inputs]: Add PERL-TEST-DEEP, PERL-TEST-FATAL, PERL-TEST-OUTPUT and
PERL-TEST-WARNINGS.
[propagated-inputs]: Add PERL-HTML-TREE.
 2017-08-19 16:43:37 +02:00
Marius Bakke
f87c1107d6
gnu: perl: Work around more "dotless @INC" build issues. 
* gnu/packages/perl.scm (perl-hash-fieldhash,
  perl-string-camelcase)[arguments]: Add 'set-perl-search-path' phase.
 2017-08-19 16:43:37 +02:00
Marius Bakke
1cd5f1776d
gnu: perl-moosex-types-datetime: Update to 0.13. 
* gnu/packages/perl.scm (perl-moosex-types-datetime): Update to 0.13.
 2017-08-19 16:43:37 +02:00
Marius Bakke
55cca6ac61
gnu: perl-plack-middleware-reverseproxy: Provide Module::Install. 
* gnu/packages/web.scm (perl-plack-middleware-reverseproxy)[native-inputs]:
Add PERL-MODULE-INSTALL.
 2017-08-19 16:43:37 +02:00
Tobias Geerinckx-Rice
e121be1e15
gnu: python-netaddr: Update to 0.7.19. 
* gnu/packages/python.scm (python-netaddr): Update to 0.7.19.
 2017-08-19 02:17:43 +02:00
Tobias Geerinckx-Rice
b7585ca3b9
gnu: lz4: Update to 1.8.0. 
* gnu/packages/compression.scm (lz4): Update to 1.8.0.  Fix typo in comment.
[source]: Remove patch.
* gnu/packages/patches/lz4-fix-test-failures.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-19 02:17:42 +02:00
Tobias Geerinckx-Rice
00d9124d40
gnu: lz4: Use recommended home page. 
* gnu/packages/compression.scm (lz4)[home-page]: Use lz4.org.
 2017-08-19 02:17:42 +02:00
Tobias Geerinckx-Rice
865aacc9fa
gnu: Remove libgames-support. 
It was simply the old name (and version) of libgnome-games-support.

* gnu/packages/gnome.scm (libgames-support): Remove variable.  Move the
inherited fields...
(libgnome-games-support): ...to here.
 2017-08-19 02:17:41 +02:00
Leo Famulari
d9f15d7e48
gnu: newsbeuter: Fix CVE-2017-12904. 
* gnu/packages/patches/newsbeuter-CVE-2017-12904.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/syndication.scm (newsbeuter)[source]: Use it.
 2017-08-18 17:24:47 -04:00
Marius Bakke
8c0c0c4def
gnu: python-pygit2: Update to 0.26.0. 
* gnu/packages/python.scm (python-pygit2): Update to 0.26.0.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Skip one
more test. Use unittest.skipIf instead of deleting sections.
 2017-08-18 21:33:31 +02:00
Tobias Geerinckx-Rice
1f9c2351d7
gnu: gnome-shell: Update to 3.24.3. 
* gnu/packages/gnome.scm (gnome-shell): Update to 3.24.3.
 2017-08-18 14:55:01 +02:00
Tobias Geerinckx-Rice
cd5db77151
gnu: gnome-control-center: Update to 3.24.3. 
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.24.3.
 2017-08-18 14:55:01 +02:00
Tobias Geerinckx-Rice
d95d6d931e
gnu: gnome-keyring: Update to 3.20.1. 
* gnu/packages/gnome.scm (gnome-keyring): Update to 3.20.1.
 2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice
32d00d78dc
gnu: libgnome-games-support: Update to 1.2.2. 
* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.2.2.
 2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice
9d086c075d
gnu: gjs: Update to 1.48.6. 
* gnu/packages/gnome.scm (gjs): Update to 1.48.6.
 2017-08-18 14:55:00 +02:00
Tobias Geerinckx-Rice
69d0674830
gnu: shotwell: Update to 0.26.3. 
* gnu/packages/gnome.scm (shotwell): Update to 0.26.3.
 2017-08-18 14:54:59 +02:00
Tobias Geerinckx-Rice
7c94a3599e
gnu: totem-pl-parser: Update to 3.10.8. 
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.10.8.
 2017-08-18 14:54:59 +02:00
Tobias Geerinckx-Rice
94793c1d0a
gnu: perl-crypt-openssl-bignum: Update to 0.08. 
* gnu/packages/tls.scm (perl-crypt-openssl-bignum): Update to 0.08.
 2017-08-18 14:54:59 +02:00
Thomas Danckaert
598b5481a4
gnu: freerdp: Update inputs. 
* gnu/packages/rdesktop.scm (freerdp) [native-inputs]: Add libxslt, libxml2
  and docbook-xsl.
  [inputs]: Add libjpeg, remove gstreamer, gst-plugins-base, libxml2 and
  libxslt.
  [arguments]: Enable features JPEG and SSE2 (on x86_64), and set up
  docbook-xsl.
 2017-08-18 14:52:35 +02:00
Thomas Danckaert
cc81f1c349
gnu: freerdp: Revert to version 1.1. 
* gnu/packages/rdesktop.scm (freerdp) [version, source]: Revert to upstream
  branch 1.1.  [inputs]: Use ffmpeg-2.8.
* gnu/packages/gnome.scm (vinagre): Add patches required to build against
  freerdp branch 1.1.
* gnu/packages/patches/vinagre-revert-1.patch,
  gnu/packages/patches/vinagre-revert-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2017-08-18 14:52:35 +02:00
Efraim Flashner
c5a856d551
gnu: xf86-video-siliconmotion: Fix building on aarch64. 
* gnu/packages/xorg.scm (xf86-video-siliconmotion)[source]: Add patch.
* gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-18 15:50:25 +03:00
Efraim Flashner
d983a1cb8e
gnu: libksysguard: Update to 5.10.4. 
* gnu/packages/kde.scm (libksysguard ): Update to 5.10.4.
 2017-08-18 15:50:23 +03:00
Efraim Flashner
de5a235c79
gnu: kde-framework: Update to 5.37.0. 
* gnu/packages/kde-frameworks.scm (extra-cmake-modules, attica,
bluez-qt, breeze-icons, kapidox, karchive, kcodecs, kconfig,
kcoreaddons, kdbusaddons, kdnssd, kguiaddons, kil8n, kidletime,
kitemmodules, kplotting, ksyntaxhighlighting, kwayland, kwidgetsaddons,
kwindowsystem, modemmanager-qt, networkmanager-qt, oxygen-icons, solid,
sonnet, threadweaver, kauth, kcompletion, kcrash, kimageformats,
kjobwidgets, knotifications, kpackage, kpty, kunitconversion, baloo,
kactivities, kactivities-stats, kbookmarks, kcmutils, kconfigwidgets,
kdeclarative, kded, kdesignerplugin, kdesu, kemoticons, kglobalaccel,
kiconthemes, kinit, kio, knewstuff, knotifyconfig, kparts, kpeople,
krunner, kservice, ktexteditor, ktextwidgets, kwallet, kxmlgui,
kxmlrpcclient, plasma-framework, kde-framworkintegration,
kdelibs4support, khtml, kjs, kjsembed, kmediaplayer, kross): Update to 5.37.0.
(bluez-qt)[arguments]: Disable tests.
(kcodecs, khtml)[native-inputs]: Add gperf.
(ksyntaxhighlighting)[properties]: New field, add upstream-name.
(kimageformats, baloo)[arguments]: Add phase to disable failing test.
(krunner)[inputs]: Add kwindowsystem.
 2017-08-18 15:50:22 +03:00
Efraim Flashner
26ca43bb60
gnu: freeipmi: Update to 1.5.7. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.7.
 2017-08-18 15:50:20 +03:00
Nicolas Goaziou
1286ff6161
gnu: giac-xcas: Update to 1.2.3-57. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.3-57.
 2017-08-18 14:31:06 +02:00
Arun Isaac
c5361b7c3d
gnu: Add rtl-sdr. 
* gnu/packages/ham-radio.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ham-radio.scm (rtl-sdr): New variable.
 2017-08-18 16:54:58 +05:30
Tobias Geerinckx-Rice
2559401037
gnu: youtube-dl: Update to 2017.08.18. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.18.
 2017-08-18 08:11:45 +02:00
Tobias Geerinckx-Rice
2c7321eaa7
gnu: libconfuse: Update to 3.2.1. 
* gnu/packages/wm.scm (libconfuse): Update to 3.2.1.
 2017-08-18 08:11:45 +02:00
Eric Bavier
623cc34cd2
gnu: rpm: Update to 4.13.0.1. 
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.1
[source]: Remove patch.  Use 'version-major+minor' for url.
* gnu/packages/patches/rpm-CVE-2014-8118.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-17 21:39:18 -05:00
Arun Isaac
52d445f130
gnu: Add rss-bridge. 
* gnu/packages/web.scm (rss-bridge): New variable.
 2017-08-18 07:18:04 +05:30
Marius Bakke
961012a0a0
gnu: Add missing import. 
This is a followup to d016b60fa3.

* gnu/packages/networking.scm (gnu): Use (gnu packages glib).
 2017-08-18 00:48:25 +02:00
Dave Love
a099570249
gnu: openmpi: Add RDMA and libfabric support. 
* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:28 +02:00
Dave Love
ae5947b0ef
gnu: Add libfabric. 
* gnu/packages/linux.scm (libfabric): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:28 +02:00
Dave Love
3eb7c00038
gnu: libnl: Add "python2" and "python3" outputs. 
* gnu/packages/linux.scm (libnl)[native-inputs]: Add SWIG and PKG-CONFIG.
[inputs]: Add PYTHON-2 and PYTHON-3.
[outputs]: Add python2, python3.
[arguments]: Add 'install-python' phase.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:27 +02:00
Dave Love
d80a47f2f5
gnu: libnl: Add "doc" output. 
* gnu/packages/linux.scm (libnl)[native-inputs]: Add doc origin.
[outputs]: New field.
[arguments]: Add 'install-doc' phase. New field.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-18 00:36:27 +02:00
Nicolas Goaziou
d016b60fa3
gnu: wireshark: Update to 2.4.0. 
* gnu/packages/networking.scm (wireshark): Update to 2.4.0.  Add "libssh",
  "libxml2", "qtbase" and "qttools" as inputs.  Remove unused "bison", "flex"
  and "gtk+" inputs.
 2017-08-18 00:17:24 +02:00
Marius Bakke
9fa0c0e6fa
gnu: libmspack: Update to 0.6 [fixes CVE-2017-{6419,11423}]. 
* gnu/packages/compression.scm (libmspack): Update to 0.6.
 2017-08-17 22:32:51 +02:00
Mark H Weaver
2d72ddf529
gnu: linux-libre: Update to 4.12.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.8.
(%linux-libre-hash): Update hash.
 2017-08-17 14:41:18 -04:00
Mark H Weaver
1e070766c0
gnu: linux-libre@4.9: Update to 4.9.44. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.44.
 2017-08-17 14:40:29 -04:00
Mark H Weaver
821f18719d
gnu: linux-libre@4.4: Update to 4.4.83. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.83.
 2017-08-17 14:39:31 -04:00
Manolis Ragkousis
e9a599cdce
gnu: Add OpenMW. 
* gnu/packages/game-development.scm (openmw): New variable.
 2017-08-17 19:40:33 +03:00
Manolis Ragkousis
42d0d13de8
gnu: Add mygui. 
* gnu/packages/game-development.scm (mygui): New variable.
 2017-08-17 19:35:28 +03:00
Manolis Ragkousis
dd75a9a22c
gnu: Add ogre. 
* gnu/packages/graphics.scm (ogre): New variable.
 2017-08-17 19:11:35 +03:00
Ricardo Wurmus
bf3fa99654
gnu: Add r-methylkit. 
* gnu/packages/bioinformatics.scm (r-methylkit): New variable.
 2017-08-17 18:00:17 +02:00
Ricardo Wurmus
8a39e4a553
gnu: sassc: Update to 3.4.5. 
* gnu/packages/web.scm (sassc): Update to 3.4.5.
[arguments]: Add PREFIX to make-flags, disable tests, remove custom install
phase.
 2017-08-17 18:00:17 +02:00
Alex Vong
f30ff28b96
gnu: mariadb: Update to 10.1.26 [fixes CVE-2017-{3636,3641,3653}]. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.26.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-08-17 11:40:29 -04:00
Ricardo Wurmus
05e8a3ef0f
gnu: Add r-ksamples. 
* gnu/packages/cran.scm (r-ksamples): New variable.
 2017-08-17 17:26:13 +02:00
Ricardo Wurmus
abcb849405
gnu: Add r-suppdists. 
* gnu/packages/cran.scm (r-suppdists): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus
8d22007380
gnu: Add r-energy. 
* gnu/packages/cran.scm (r-energy): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus
6b4a9aec23
gnu: Add r-fitdistrplus. 
* gnu/packages/cran.scm (r-fitdistrplus): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus
521e0703d8
gnu: Add r-limsolve. 
* gnu/packages/cran.scm (r-limsolve): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus
a3e36d3772
gnu: Add r-lpsolve. 
* gnu/packages/cran.scm (r-lpsolve): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus
212f612040
gnu: Add r-qvalue. 
* gnu/packages/bioinformatics.scm (r-qvalue): New variable.
 2017-08-17 17:26:12 +02:00
Ricardo Wurmus
d4a1e918cb
gnu: Add r-fastseg. 
* gnu/packages/bioinformatics.scm (r-fastseg): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus
b31e4a9693
gnu: Add r-emdbook. 
* gnu/packages/cran.scm (r-emdbook): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus
97cb349dc1
gnu: r-trimcluster: Update license. 
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus
8c72b83096
gnu: Add r-bbmle. 
* gnu/packages/cran.scm (r-bbmle): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus
d6b156dc04
gnu: Add r-inline. 
* gnu/packages/cran.scm (r-inline): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus
062b6dbd25
gnu: Add r-lmtest. 
* gnu/packages/cran.scm (r-lmtest): New variable.
 2017-08-17 17:26:11 +02:00
Ricardo Wurmus
58db98c9f2
gnu: Add r-extremes. 
* gnu/packages/cran.scm (r-extremes): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus
28476b4bc0
gnu: Add r-distillery. 
* gnu/packages/cran.scm (r-distillery): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus
6427e62005
gnu: Add r-lmoments. 
* gnu/packages/cran.scm (r-lmoments): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus
e389d10f55
gnu: Add r-rmtstat. 
* gnu/packages/cran.scm (r-rmtstat): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus
b723dedf81
gnu: Add r-rook. 
* gnu/packages/web.scm (r-rook): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus
bc0081e76f
gnu: Add r-sp. 
* gnu/packages/cran.scm (r-sp): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus
3349faecf5
gnu: Add r-proxy. 
* gnu/packages/cran.scm (r-proxy): New variable.
 2017-08-17 17:26:10 +02:00
Ricardo Wurmus
ac8402072b
gnu: Add r-ggally. 
* gnu/packages/cran.scm (r-ggally): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus
c9c6f4b543
gnu: Add r-progress. 
* gnu/packages/cran.scm (r-progress): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus
71be51d531
gnu: Add r-reshape. 
* gnu/packages/cran.scm (r-reshape): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus
18a16ceb7c
gnu: Add r-prettyunits. 
* gnu/packages/cran.scm (r-prettyunits): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus
49c9c29790
gnu: Add r-ffbase. 
* gnu/packages/cran.scm (r-ffbase): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus
a7f0faa204
gnu: Add r-ff. 
* gnu/packages/cran.scm (r-ff): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus
f2e974e1a2
gnu: Add r-fastmatch. 
* gnu/packages/cran.scm (r-fastmatch): New variable.
 2017-08-17 17:26:09 +02:00
Ricardo Wurmus
e0268ff2e4
gnu: Add r-getoptlong. 
* gnu/packages/cran.scm (r-getoptlong): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus
d3c67e1b45
gnu: Add r-dendextend. 
* gnu/packages/cran.scm (r-dendextend): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus
0548660420
gnu: Add r-compare. 
* gnu/packages/cran.scm (r-compare): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus
eb60149eee
gnu: Add r-png. 
* gnu/packages/image.scm (r-png): New variable.
 2017-08-17 17:26:08 +02:00
Ricardo Wurmus
5cc79c9c50
gnu: Add r-powerlaw. 
* gnu/packages/cran.scm (r-powerlaw): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus
2856369fad
gnu: Add r-circlize. 
* gnu/packages/cran.scm (r-circlize): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus
4847a62ea9
gnu: Add r-globaloptions. 
* gnu/packages/cran.scm (r-globaloptions): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus
2bdb5c3f78
gnu: Add r-shape. 
* gnu/packages/cran.scm (r-shape): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus
c69d27db57
gnu: Add r-calibrate. 
* gnu/packages/cran.scm (r-calibrate): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus
33ce12e293
gnu: Add r-auc. 
* gnu/packages/cran.scm (r-auc): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus
4a007ffafe
gnu: Add r-annotationhub. 
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
 2017-08-17 17:25:47 +02:00
Ricardo Wurmus
5f96f30f5d
gnu: Add r-interactivedisplaybase. 
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
 2017-08-17 17:25:46 +02:00
Efraim Flashner
a71fd67175
gnu: american-fuzzy-lop: Update to 2.49b. 
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
 2017-08-17 18:17:00 +03:00
Efraim Flashner
aacefef222
gnu: american-fuzzy-lop: Add support for non-Intel architectures. 
* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for
non-Intel targets.
[arguments]: On non-Intel systems, add phase to disable non-Intel
architecture warning and remove incompatible binaries.
 2017-08-17 18:16:57 +03:00
Nicolas Goaziou
721e1987d0
gnu: Add mgba. 
* gnu/packages/games.scm (mgba): New public variable.
 2017-08-17 10:56:04 +02:00
Ricardo Wurmus
a6d05444ab
gnu: cuirass: Update to 0.0.1-7.6f85bc0. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0.
[arguments]: Add guile-git and guile-bytestructures to the load path.
[inputs]: Remove git, add guile-git and guile-bytestructures.
 2017-08-17 09:12:46 +02:00
Efraim Flashner
e3b861ce38
gnu: python-cython: Update to 0.26. 
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-17 06:46:06 +03:00
Danny Milosavljevic
d6ef422fe7
gnu: Add fbreader. 
* gnu/packages/ebook.scm (fbreader): New variable.
 2017-08-17 02:00:51 +02:00
Danny Milosavljevic
84a52639c9
gnu: Add liblinebreak. 
* gnu/packages/ebook.scm (liblinebreak): New variable.
 2017-08-17 01:56:38 +02:00
Tobias Geerinckx-Rice
f73f1f0769
gnu: python-cryptography-vectors: Update to 2.0.3. 
* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
 2017-08-16 22:35:11 +02:00
Tobias Geerinckx-Rice
f37995fa20
gnu: python-cryptography: Update to 2.0.3. 
* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
 2017-08-16 22:35:10 +02:00
Tobias Geerinckx-Rice
f886e7cab1
gnu: limnoria: Update to 2017.08.03. 
* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
 2017-08-16 22:35:10 +02:00
Tobias Geerinckx-Rice
e2a4c13023
gnu: cbatticon: Update to 1.6.6. 
* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
 2017-08-16 22:35:10 +02:00
Julien Lepiller
f207984985
gnu: Add gpick. 
* gnu/packages/image.scm (gpick): New variable.
 2017-08-16 21:37:33 +03:00
ng0
d0b13d7b9b
gnu: fossil: Update to 2.2. 
* gnu/packages/version-control.scm (fossil): Update to 2.2.
[source]: Add uri for older versions.
[arguments]: Enable previously disabled test.
 2017-08-16 21:37:32 +03:00
Efraim Flashner
ab1bd285db
gnu: connman: Update to 1.35. 
* gnu/packages/connman.scm (connman): Update to 1.35.
 2017-08-16 21:37:29 +03:00
Kei Kebreau
e664200c0c
gnu: Add ltris. 
* gnu/packages/games.scm (ltris): New variable.
 2017-08-16 11:28:12 -04:00
Alex Vong
af4db693db
gnu: Add ghc-gitrev. 
* gnu/packages/haskell.scm (ghc-gitrev): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong
e0ca14c7a8
gnu: Add ghc-geniplate-mirror. 
* gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong
298af2a8da
gnu: Add ghc-monadplus. 
* gnu/packages/haskell.scm (ghc-monadplus): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong
005a08e3dc
gnu: Add ghc-fail. 
* gnu/packages/haskell.scm (ghc-fail): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong
1eced2a7a8
gnu: Add ghc-edisoncore. 
* gnu/packages/haskell.scm (ghc-edisoncore): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong
212ae09541
gnu: Add ghc-edisonapi. 
* gnu/packages/haskell.scm (ghc-edisonapi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:39 +02:00
Alex Vong
a623fd7fed
gnu: Add ghc-murmur-hash. 
* gnu/packages/haskell.scm (ghc-murmur-hash): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:38 +02:00
Alex Vong
ca48a34594
gnu: Add ghc-data-hash. 
* gnu/packages/haskell.scm (ghc-data-hash): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 17:07:38 +02:00
Efraim Flashner
adcb30642c
gnu: pspp: Update to 0.11.0. 
This fixes CVE-2017-10791, CVE-2017-10792.

* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
 2017-08-16 17:57:40 +03:00
Alex Vong
96f23b62e0
gnu: Add ghc-equivalence. 
* gnu/packages/haskell.scm (ghc-equivalence): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:13 +02:00
Alex Vong
3f8b8e731c
gnu: Add ghc-boxes. 
* gnu/packages/haskell.scm (ghc-boxes): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:13 +02:00
Alex Vong
be04f8020a
gnu: Add ghc-edit-distance. 
* gnu/packages/haskell.scm (ghc-edit-distance): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:13 +02:00
Alex Vong
867ed9776c
gnu: Add ghc-stmonadtrans. 
* gnu/packages/haskell.scm (ghc-stmonadtrans): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:12 +02:00
Alex Vong
f99a57dc28
gnu: Add ghc-strict. 
* gnu/packages/haskell.scm (ghc-strict): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:12 +02:00
Alex Vong
c12562e1e8
gnu: cpphs: Update to 1.20.8. 
* gnu/packages/haskell.scm (cpphs): Update to 1.20.8.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:53:08 +02:00
ng0
2f7966c8e2
gnu: font-google-noto: Use font-build-system. 
* gnu/packages/fonts.scm (font-google-noto)[build-system]: Use
font-build-system.
[source]: Use url-fetch/zipbomb.
[arguments]: Remove it.
[native-inputs]: Remove it.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-08-16 16:18:50 +02:00
Efraim Flashner
d534f3a4d3
gnu: r-mzr: Fix building on aarch64 and armhf. 
* gnu/packages/bioinformatics.scm (r-mzr)[inputs]: Add boost.
 2017-08-16 12:36:25 +03:00
Efraim Flashner
953a12fa9b
gnu: hdf4: Fix building on aarch64. 
* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
 2017-08-16 09:33:11 +03:00
Leo Famulari
8343d373d5
gnu: cgit: Don't build cgit's special 'git:src' input. 
This special version of Git is only used within the build process of
cgit. We don't need to build it otherwise, so the package is removed
with this commit.

* gnu/packages/version-control.scm (cgit)[inputs]: Replace the git@2.10
package with an origin reference of the source code.
(git@2.10): Remove variable.
 2017-08-15 17:59:22 -04:00
Danny Milosavljevic
2434f5cedf
gnu: Add dssi. 
* gnu/packages/music.scm (dssi): New variable.
 2017-08-15 20:58:03 +02:00
Oleg Pykhalov
425d66f7a7
gnu: Add emacs-highlight-symbol. 
* gnu/packages/emacs.scm (emacs-highlight-symbol): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-15 20:52:58 +02:00
ng0
be69176bbd
gnu: fish-guix: Use new download URL. 
* gnu/packages/shells.scm (fish-guix)[source]: Adjust the download URL.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-15 20:41:23 +02:00
Marius Bakke
dca82aefbc
gnu: p11-kit: Update to 0.23.8. 
* gnu/packages/tls.scm (p11-kit): Update to 0.23.8.
 2017-08-15 20:38:02 +02:00
Leo Famulari
6550e5ad64
gnu: signify: Update to 22. 
* gnu/packages/crypto.scm (signify): Update to 22.
 2017-08-15 13:27:30 -04:00
Ben Woodcroft
06f31e50b1
gnu: diamond: Update to 0.9.10. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.10.
 2017-08-15 18:49:33 +10:00
Efraim Flashner
3837108e40
gnu: bcftools: Fix building on aarch64. 
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file.
* gnu/packages/bioinformatics.scm (bcftools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-08-15 10:31:20 +03:00
Mark H Weaver
09ec5a0f0c
Merge branch 'master' into core-updates 2017-08-15 03:10:14 -04:00
Efraim Flashner
2d430f2923
Revert "gnu: pspp: Update to 0.11.0." 
This FTBFS on x86_64 and i686.

This reverts commit f4c808df5b.
 2017-08-15 10:03:40 +03:00
Tobias Geerinckx-Rice
14f366e58d
gnu: youtube-dl: Update to 2017.08.13. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.13.
 2017-08-15 01:42:49 +02:00
Marius Bakke
f28fea1ca7
gnu: e2fsprogs: Update to 1.43.5. 
* gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
[source]: Use patch.
 2017-08-15 01:08:01 +02:00
Leo Famulari
15428168ea
gnu: cvs: Fix CVE-2017-12836. 
* gnu/packages/patches/cvs-2017-12836.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (cvs)[source]: Use it.
 2017-08-14 15:55:31 -04:00
Marius Bakke
36bfcf7e3a
gnu: git@2.10: Update to 2.10.4 [fixes CVE-2017-1000117]. 
...also disable tests, since they broke after c9f4f56b24.

* gnu/packages/version-control.scm (git@2.10): Update to 2.10.4.
[arguments]: New field.
 2017-08-14 21:44:24 +02:00
Efraim Flashner
2bccf1c0ec
gnu: gcc@7: Update to 7.2.0. 
* gnu/packages/gcc.scm (gcc@7): Update to 7.2.0.
[source]: Switch to xz compression.
 2017-08-14 22:30:07 +03:00
Marius Bakke
a547a6d560
Revert "gnu: e2fsprogs: Update to 1.43.5." 
Fails to build on i686:
<https://lists.gnu.org/archive/html/guix-devel/2017-08/msg00118.html>

This reverts commit 3ddaa7922b.
 2017-08-14 21:22:12 +02:00
Kei Kebreau
1faf081b47
gnu: milkytracker: Update to 1.01.00. 
* gnu/packages/music.scm (milkytracker): Update to 1.01.00.
 2017-08-14 14:26:15 -04:00
Ricardo Wurmus
9634804890
gnu: Add bismark. 
* gnu/packages/bioinformatics.scm (bismark): New variable.
 2017-08-14 12:00:56 +02:00
Ricardo Wurmus
86763fdd70
gnu: Add r-dexseq. 
* gnu/packages/bioinformatics.scm (r-dexseq): New variable.
 2017-08-14 12:00:51 +02:00
Ricardo Wurmus
233f4f43bf
gnu: Add perl-math-random-secure. 
* gnu/packages/crypto.scm (perl-math-random-secure): New variable.
 2017-08-14 11:50:42 +02:00
Ricardo Wurmus
2023b79f59
gnu: Add perl-crypt-random-source. 
* gnu/packages/crypto.scm (perl-crypt-random-source): New variable.
 2017-08-14 11:50:13 +02:00
Ricardo Wurmus
2bdc07c2a5
gnu: Add perl-type-tiny. 
* gnu/packages/perl.scm (perl-type-tiny): New variable.
 2017-08-14 11:46:23 +02:00
Ricardo Wurmus
a0eb3104a9
gnu: Add perl-ref-util-xs. 
* gnu/packages/perl.scm (perl-ref-util-xs): New variable.
 2017-08-14 11:46:14 +02:00
Ricardo Wurmus
44d37e43fe
gnu: Add perl-regexp-util. 
* gnu/packages/perl.scm (perl-regexp-util): New variable.
 2017-08-14 11:46:04 +02:00
Ricardo Wurmus
413dd21084
gnu: Add perl-type-tie. 
* gnu/packages/perl.scm (perl-type-tie): New variable.
 2017-08-14 11:45:56 +02:00
Ricardo Wurmus
649238cbc7
gnu: Add perl-math-random-isaac. 
* gnu/packages/crypto.scm (perl-math-random-isaac): New variable.
 2017-08-14 11:45:20 +02:00