Commit graph

30052 commits

Author SHA1 Message Date
Ben Woodcroft
f38ac742e6
gnu: mash: Update to 2.0.
* gnu/packages/bioinformatics.scm (mash): Update to 2.0.
2018-03-30 12:18:35 +10:00
Ben Woodcroft
c7a8aa131d
gnu: mafft: Update to 7.394.
* gnu/packages/bioinformatics.scm (mafft): Update to 7.394.
2018-03-30 12:18:35 +10:00
Ben Woodcroft
9a40b8d9b2
gnu: diamond: Update to 0.9.19.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.19.
2018-03-30 12:18:35 +10:00
Ricardo Wurmus
315ed91efb
gnu: pybitmessage: Update to 0.6.3.2 [security fixes].
* gnu/packages/messaging.scm (pybitmessage): Update to 0.6.3.2.
[source]: Fetch from git.
2018-03-29 22:43:37 +02:00
Ricardo Wurmus
80808d678a
gnu: hydrogen: Update to 1.0.0-beta1.
* gnu/packages/music.scm (hydrogen): Update to 1.0.0-beta1.
[source]: Fetch from git.
[arguments]: Add phase to fix installation directory for pixmaps.
[inputs]: Remove qt-4; add qtbase and qtxmlpatterns.
2018-03-29 22:40:30 +02:00
Ricardo Wurmus
9f1ac4fa49
gnu: mod-host: Update to 0.10.6-3.1726ad06b.
* gnu/packages/music.scm (mod-host): Update to 0.10.6-3.1726ad06b.
2018-03-29 22:26:59 +02:00
Ricardo Wurmus
9602ac76b4
gnu: drumkv1: Update to 0.9.0.
* gnu/packages/music.scm (drumkv1): Update to 0.9.0.
2018-03-29 22:22:50 +02:00
Ricardo Wurmus
2a5d08daf4
gnu: samplv1: Update to 0.9.0.
* gnu/packages/music.scm (samplv1): Update to 0.9.0.
2018-03-29 22:22:50 +02:00
Ricardo Wurmus
4503b18701
gnu: padthv1: Update to 0.9.0.
* gnu/packages/music.scm (padthv1): Update to 0.9.0.
2018-03-29 22:22:50 +02:00
Ricardo Wurmus
7c60a23cb1
gnu: synthv1: Update to 0.9.0.
* gnu/packages/music.scm (synthv1): Update to 0.9.0.
2018-03-29 22:22:50 +02:00
Ricardo Wurmus
15c5541bc8
gnu: qtractor: Update to 0.9.0.
* gnu/packages/music.scm (qtractor): Update to 0.9.0.
2018-03-29 22:22:50 +02:00
Marius Bakke
cee6d90f73
gnu: awesome: Remove obsolete snippet.
* gnu/packages/wm.scm (awesome)[source](snippet): Remove.
2018-03-29 21:30:15 +02:00
Marius Bakke
40fb6b84f9
gnu: xcb-util-xrm: Update to 1.3.
* gnu/packages/xdisorg.scm (xcb-util-xrm): Update to 1.3.
2018-03-29 21:30:15 +02:00
Marius Bakke
d2fd5c6532
gnu: mbedtls-apache: Update to 2.7.2.
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.2.
[source](snippet): Remove.
2018-03-29 21:30:15 +02:00
Leo Famulari
b6beda1d6b
gnu: Add botan.
* gnu/packages/crypto.scm (botan): New variable.
2018-03-29 14:40:34 -04:00
Tonton
d4e0ebd016
gnu: Add fpm2.
* gnu/packages/password-utils.scm (fpm2): New variable.

Signed-off-by: Tonton <tonton@riseup.net>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-29 18:43:09 +02:00
Tonton
af1e3dfe27
gnu: Add screen-message.
* gnu/packages/xdisorg.scm (screen-message): New variable.

Signed-off-by: Tonton <tonton@riseup.net>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-29 18:35:46 +02:00
Tobias Geerinckx-Rice
95fb6b0413
gnu: r-lme4: Update to 1.1-16.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-16.
2018-03-29 17:45:45 +02:00
Tobias Geerinckx-Rice
dc8450c178
gnu: r-curl: Update to 3.2.
* gnu/packages/web.scm (r-curl): Update to 3.2.
2018-03-29 17:36:57 +02:00
Tobias Geerinckx-Rice
f36685b058
gnu: bspwm: Update to 0.9.4.
* gnu/packages/wm.scm (bspwm): Update to 0.9.4.
2018-03-29 17:36:50 +02:00
Tobias Geerinckx-Rice
4bb5bdd963
gnu: rss-bridge: Update to 2018-03-11.
* gnu/packages/web.scm (rss-bridge): Update to 2018-03-11.
2018-03-29 17:36:39 +02:00
Roel Janssen
e086d2f68b
gnu: r-mutationalpatterns: Update to 1.4.3.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3;
  [propagated-inputs]: Remove r-gridextra.
2018-03-29 15:50:44 +02:00
Roel Janssen
53e42694e5
gnu: kaiju: Update to 1.6.2.
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2;
  [inputs]: Add zlib.
2018-03-29 15:40:52 +02:00
Vasile Dumitrascu
d232e02ecf
gnu: Add duperemove.
* gnu/packages/disk.scm (duperemove): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-29 15:17:35 +02:00
Ludovic Courtès
9c3f2c2e83
gnu: Add python-debug.
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/python.scm (python-debug): New variable.
2018-03-29 15:17:35 +02:00
Efraim Flashner
594e5d7368
gnu: nano: Update to 2.9.5.
* gnu/packages/nano.scm (nano): Update to 2.9.5.
2018-03-29 16:08:06 +03:00
Roel Janssen
c974008d91
gnu: Add r-idr.
* gnu/packages/cran.scm (r-idr): New variable.
2018-03-29 14:26:44 +02:00
Roel Janssen
996bed0608
gnu: Add r-amap.
* gnu/packages/cran.scm (r-amap): New variable.
2018-03-29 14:11:21 +02:00
Roel Janssen
6174db2b2c
gnu: Add r-venndiagram.
* gnu/packages/cran.scm (r-venndiagram): New variable.
2018-03-29 14:08:36 +02:00
Roel Janssen
ddbf2a98ba
gnu: Add r-pastecs.
* gnu/packages/cran.scm (r-pastecs): New variable.
2018-03-29 13:54:30 +02:00
Ricardo Wurmus
017bffc1a3
gnu: libusb4java: Adjust for building with libusb 1.0.22.
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove
"-Werror" flag.
2018-03-29 12:26:38 +02:00
Ricardo Wurmus
b0a4b6d957
gnu: libusb-for-axoloti: Update patch.
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb
1.0.22.
2018-03-29 12:26:38 +02:00
Chris Marusich
7874e9e047
gnu: Refactor boot-service-type and activation-service-type.
* gnu/services.scm (boot-service-type) <compose>: Use the "identity"
  procedure instead of the "append" procedure because it more accurately
  reflects the intent, which is to simply return the single list of
  extensions to which fold-services applies the "compose" procedure.
  (activation-service-type) <compose>: Likewise.
2018-03-29 08:38:49 +02:00
Chris Marusich
881c61d062
doc: Improve <service-type> documentation.
* doc/guix.texi (Service Reference): Correct and clarify some statements
  regarding the "compose" and "extend" procedures of <service-type>.
2018-03-29 07:29:49 +02:00
Chris Marusich
3cd4447f56
guix-install.sh: Explicitly set root's home directory.
* etc/guix-install.sh (ROOT_HOME): New variable.
  (sys_create_store, sys_enable_guix_daemon, sys_authorize_build_farms):
  Use ROOT_HOME instead of ~root or the HOME environment variable.
* doc/guix.texi (Binary Installation): Instead of assuming that ~ and
  $HOME refer to root's directory simply because commands are being run
  as root, explicilty refer to it via ~root.

Fixes: <https://bugs.gnu.org/30728>
2018-03-29 07:03:37 +02:00
Jelle Licht
ce353a548f
gnu: node: Update to 9.10.0.
* gnu/packages/node.scm (node): Update to 9.10.0.
2018-03-28 23:33:53 +02:00
Jelle Licht
b63af9b7c7
gnu: http-parser: Update to 2.8.0.
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
2018-03-28 23:33:43 +02:00
Marius Bakke
0a8985f395
gnu: xf86-video-ati: Update to 18.0.1.
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
2018-03-28 21:23:21 +02:00
Marius Bakke
4d967992d8
gnu: xf86-input-libinput: Update to 0.27.0.
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0.
2018-03-28 21:23:21 +02:00
Leo Famulari
935806b822
gnu: ntp: Update to 4.2.8p11 [security-fixes].
Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p11.
2018-03-28 14:59:47 -04:00
Leo Famulari
590bdc149b
gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739].
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2o): New variable.
2018-03-28 14:07:45 -04:00
Konrad Hinsen
1cde746700
gnu: Add r-parsedate.
* gnu/packages/cran.scm (r-parsedate): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28 17:18:20 +02:00
Maxim Cournoyer
3481c714c6
gnu: mu: Fix tests failures triggered by DST.
* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28 17:14:40 +02:00
Nadya Voronova
910deec66c
gnu: Add tcalc.
* gnu/packages/maths.scm (tcalc): New variables.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28 17:13:00 +02:00
Ludovic Courtès
c5e7bca248
build: Build (guix ci) and (guix scripts weather) when HAVE_GUILE_JSON.
* Makefile.am (MODULES): Move guix/ci.scm and guix/scripts/weather.scm
to the HAVE_GUILE_JSON-guarded block.
2018-03-28 17:06:33 +02:00
Ludovic Courtès
183445a6ed
weather: Report continuous integration stats.
* guix/scripts/weather.scm (histogram, throughput, queued-subset): New
procedures.
(report-server-coverage): Report CI information.
* doc/guix.texi (Invoking guix weather): Document it.
2018-03-28 16:17:06 +02:00
Ludovic Courtès
b3517f3f9f
Add (guix ci).
* guix/ci.scm: New file.
* Makefile.am (MODULES): Add it.
2018-03-28 16:17:06 +02:00
Arun Isaac
733d66a532
gnu: culmus: Rename to font-culmus.
* gnu/packages/fonts.scm (culmus): Rename to...
(font-culmus): ...this. Re-indent.
2018-03-28 14:58:34 +05:30
Arun Isaac
0328c514ed
gnu: culmus: Switch to font-build-system.
* gnu/packages/fonts.scm (culmus): Switch to font-build-system.
[arguments]: Replace system* with invoke.
2018-03-28 14:58:34 +05:30
Arun Isaac
15795e0723
gnu: font-linuxlibertine: Switch to font-build-system.
* gnu/packages/fonts.scm (font-linuxlibertine): Switch to font-build-system.
[arguments]: Replace system* with invoke.
2018-03-28 14:58:34 +05:30