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Author SHA1 Message Date
Christopher Baines
f422a23e0e
gnu: nar-herder: Update to 0-28.6be6f63. 
This fixes the incompatability with the updated guile-lib.

* gnu/packages/package-management.scm (nar-herder): Update to 0-28.6be6f63.

Change-Id: Ib238747115cbfac56916dd02dc50e5c3738b31c8
 2024-04-23 14:31:58 +01:00
Christopher Baines
1f963b9c58
gnu: guix-build-coordinator: Update to 0-101.0df0c1a. 
This uses -O1 rather than the default -O2 to work around bug(s) in guile-next,
and fixes the incompatability with the updated guile-lib.

* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-101.0df0c1a.

Change-Id: I52120016d306828e1430917eba6e7b1cc71858a2
 2024-04-23 14:31:56 +01:00
André Batista
be4b71f264
gnu: lighttpd: Update to 1.4.76. 
* gnu/packages/web.scm (lighttpd): Update to 1.4.76.
[native-inputs]: Add autoconf, automake and libtool.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
Change-Id: Ie033c7c605b8bebe41dbda68d230935c1e528318
 2024-04-23 15:02:11 +02:00
André Batista
f6367b69bc
gnu: tor: Update to 0.4.8.11. 
* gnu/packages/tor.scm (tor): Update to 0.4.8.11.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
Change-Id: I287b8201cffb3810be6a7bce0829534e2c0c9fa8
 2024-04-23 12:57:57 +02:00
Daniel Ziltener
2d19e505f6
gnu: Add cppdap. 
* gnu/packages/debug.scm (cppdap): New variable.
* gnu/packages/patches/cppdap-add-CPPDAP_USE_EXTERNAL_GTEST_PACKAGE.patch: New
patch.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
Change-Id: I328ca0c01787defcc9d18f4ccd7762c86412cca7
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-04-23 16:45:34 +08:00
fanquake
837016fe33
gnu: LLVM, Clang, libomp, lld: Update to 18.1.4. 
* gnu/packages/llvm.scm (llvm-18, clang-18, libomp-18, lld-18):
Update to 18.1.4.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-04-23 15:22:09 +08:00
Feng Shu
bb398fe6a9
gnu: slim: Update to 1.4.1. 
* gnu/packages/display-managers.scm (slim): Update to 1.4.1.
[arguments]: Do not install systemd files again.

Change-Id: Ida6ed99dad7293dc64d91eb4dec0870608afffbe
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-04-23 15:08:37 +08:00
Andy Tai
e5593155ad
gnu: vlc: Update to 3.0.20 
* gnu/packages/video.scm (vlc): update to 3.0.20

Reviewed-by: Dale Mellor <guix-devel-0brg6a@rdmp.org>
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
Change-Id: I7a57c739dc3a1025c8d0fba32a9a9c492fcd1778
 2024-04-23 15:05:27 +08:00
fanquake
17a6d20a42
gnu: Add lld-18. 
* gnu/packages/llvm.scm (lld-18): New variable.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-04-23 15:05:24 +08:00
Florian Pelz
e5c0ea22e6
news: Update news and commit for nss-certs change. 
As discussed in
<https://lists.gnu.org/archive/html/guix-devel/2024-04/msg00211.html>.

* etc/news.scm: Update.

Change-Id: Id893abe6642de3939f7993267075764e4bb5d820
 2024-04-23 08:01:51 +02:00
Fabio Natali
67a3a83170
doc: Fix mentions of 'nss-certs'. 
* doc/guix.texi (Using the Configuration System): Fix mention of 'nss-certs'
after the package has been added to '%default-packages' (see
'65e8472a4b6fc6f66871ba0dad518b7d4c63595e').

* doc/guix.texi (Web Services): Fix mention of 'nss-certs' after the package has
been added to '%default-packages' (see
'65e8472a4b6fc6f66871ba0dad518b7d4c63595e').

Change-Id: Iecdecb8deb440cdea224f3e9e7ce54e89dd575a2
Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>
 2024-04-23 07:13:38 +02:00
Matthew Trzcinski
b8ccbc942e
doc: Fix typo. 
* doc/guix.texi (Installing Guix in a VM): Change indefinite article.

Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>
 2024-04-22 21:08:41 +02:00
Ricardo Wurmus
02df0a8a7d
gnu: Add r-saige. 
* gnu/packages/bioinformatics.scm (r-saige): New variable.

Change-Id: Id5bda4d25ca61fe26d11bae0af19900fd0f0080e
 2024-04-22 16:35:31 +02:00
Ricardo Wurmus
4a5a23aceb
gnu: Add savvy. 
* gnu/packages/bioinformatics.scm (savvy): New variable.

Change-Id: I48dcfad2c6c769778bd79dffa084332da53991ad
 2024-04-22 16:35:31 +02:00
Ricardo Wurmus
81d6fe1672
gnu: Add streambuf-shrinkwrap. 
* gnu/packages/compression.scm (streambuf-shrinkwrap): New variable.

Change-Id: I3405b777e18cfd7b505f6de06019353d6c49a797
 2024-04-22 16:35:30 +02:00
Ricardo Wurmus
b829aeefb8
gnu: Add r-metaskat. 
* gnu/packages/cran.scm (r-metaskat): New variable.

Change-Id: I9f9917ca4ecf4a15a8926df0b6dfad0f517a31dd
 2024-04-22 16:35:30 +02:00
Ricardo Wurmus
2082dfde93
gnu: Add r-skat. 
* gnu/packages/cran.scm (r-skat): New variable.

Change-Id: Ia16c9214dea6ef83081f60d1e93c5849f96ab8f2
 2024-04-22 16:35:30 +02:00
Ricardo Wurmus
f941e51ca3
gnu: Add r-spatest. 
* gnu/packages/cran.scm (r-spatest): New variable.

Change-Id: I0bece84e911e6e57dda0f0075e953304f1e25167
 2024-04-22 16:35:30 +02:00
Wilko Meyer
30de275109
gnu: linux-libre 5.15: Update to 5.15.156. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.156.
(linux-libre-5.15-pristine-source): Update hashes.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I33e9832611372321e9bedb3ae0c1da657ccc5c79
 2024-04-22 07:46:13 -04:00
Wilko Meyer
63728df4ec
gnu: linux-libre 6.1: Update to 6.1.87. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.87.
(linux-libre-6.1-pristine-source): Update hashes.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I9246f882bbb9f4572a88fef3b1eafc1caffc9fec
 2024-04-22 07:46:12 -04:00
Wilko Meyer
5c43d0ba0d
gnu: linux-libre 6.6: Update to 6.6.28. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.28.
(linux-libre-6.6-pristine-source): Update hashes.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: Ifa0dd02a61e07efcfdf733e8fb12b5bcf5a430ca
 2024-04-22 07:46:12 -04:00
Wilko Meyer
ab0f220e9f
gnu: linux-libre 6.8: Update to 6.8.7. 
* gnu/packages/linux.scm (linux-libre-6.8-version): Update to 6.8.7.
(linux-libre-6.8-pristine-source): Update hashes.

Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I8b04b4af1bc62d336366b8f0e7281c9249fc6d7d
 2024-04-22 07:46:07 -04:00
Ricardo Wurmus
28e41dc3bc
gnu: r-tclust: Update to 2.0-3. 
* gnu/packages/statistics.scm (r-tclust): Update to 2.0-3.
[propagated-inputs]: Remove r-cluster, r-mclust, r-mvtnorm, and r-sn; add r-doparallel,
r-foreach, r-mass, r-rcpp, and r-rcpparmadillo.

Change-Id: I3a39e707461de2aef4bcccc11bb839e8b273f15b
 2024-04-22 12:34:18 +02:00
Ricardo Wurmus
b0f21308d2
gnu: r-segmented: Update to 2.0-4. 
* gnu/packages/statistics.scm (r-segmented): Update to 2.0-4.

Change-Id: Iae911494c64b04540c877e2eb31efb933d4d94c6
 2024-04-22 12:34:18 +02:00
Ricardo Wurmus
47a31f95e2
gnu: r-openssl: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.2.

Change-Id: I7d949c4c617940b729d07478902e1ccedcd28c2d
 2024-04-22 12:34:18 +02:00
Ricardo Wurmus
1991848db4
gnu: r-keras: Update to 2.15.0. 
* gnu/packages/cran.scm (r-keras): Update to 2.15.0.

Change-Id: Iff6a980dbe3fb2c118f80029708d3afc8739f0f5
 2024-04-22 12:34:18 +02:00
Ricardo Wurmus
628c2d9624
gnu: r-tfruns: Update to 1.5.3. 
* gnu/packages/cran.scm (r-tfruns): Update to 1.5.3.

Change-Id: I2c3008b81c269021f8259583e94c7bb8b324b22e
 2024-04-22 12:34:18 +02:00
Ricardo Wurmus
95e8e95b19
gnu: r-gsa: Update to 1.03.3. 
* gnu/packages/cran.scm (r-gsa): Update to 1.03.3.

Change-Id: I2c3712958bfa15c32dac86a4c254c64f4e8dfad0
 2024-04-22 12:34:18 +02:00
Ricardo Wurmus
a79bacf8b0
gnu: r-pkgdown: Update to 2.0.9. 
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.9.

Change-Id: I06dd2f13fd5fb215e0fa3c9482af75049d6955d8
 2024-04-22 12:34:17 +02:00
Ricardo Wurmus
8a7eea118f
gnu: r-tune: Update to 1.2.1. 
* gnu/packages/cran.scm (r-tune): Update to 1.2.1.

Change-Id: I9167af6ef9f2d7046765ff818c836ba962f6cc7e
 2024-04-22 12:34:17 +02:00
Ricardo Wurmus
3989dca8a1
gnu: r-flexsurv: Update to 2.3. 
* gnu/packages/cran.scm (r-flexsurv): Update to 2.3.

Change-Id: If44f31a0171ec910b617e56bc3470e71ab3e1ee1
 2024-04-22 12:34:17 +02:00
Ricardo Wurmus
3b1f8972fa
gnu: r-tolerance: Update to 3.0.0. 
* gnu/packages/cran.scm (r-tolerance): Update to 3.0.0.
[propagated-inputs]: Remove r-rgl; add r-plotly.

Change-Id: I7edd308af3937baa3384428cab531367e936b637
 2024-04-22 12:34:16 +02:00
Ricardo Wurmus
c4f40ee0ff
gnu: r-uwot: Update to 0.2.2. 
* gnu/packages/cran.scm (r-uwot): Update to 0.2.2.
[propagated-inputs]: Add r-rspectra.

Change-Id: Iece11fdfb68660f64adc1544eb52f9912335a8af
 2024-04-22 12:34:16 +02:00
Ricardo Wurmus
21473fe5b5
gnu: r-pamr: Update to 1.56.2. 
* gnu/packages/cran.scm (r-pamr): Update to 1.56.2.

Change-Id: I2235d5e24cd2a18c79374d03f5e9225f9a2d9d7f
 2024-04-22 12:34:16 +02:00
Ricardo Wurmus
926d240167
gnu: r-apcluster: Update to 1.4.12. 
* gnu/packages/cran.scm (r-apcluster): Update to 1.4.12.

Change-Id: I31b8791336e14c04da776f70617ac5443a6946a4
 2024-04-22 12:34:15 +02:00
Ricardo Wurmus
0b507db3c0
gnu: r-tm: Update to 0.7-13. 
* gnu/packages/cran.scm (r-tm): Update to 0.7-13.

Change-Id: I970c336d647911efbfa4e554ef717c732c3a6bba
 2024-04-22 12:34:15 +02:00
Ricardo Wurmus
f5c0f54bdb
gnu: r-targets: Update to 1.7.0. 
* gnu/packages/cran.scm (r-targets): Update to 1.7.0.
[propagated-inputs]: Remove r-digest.

Change-Id: I72c95351da2fe453014d25e4403a979dba9b35ec
 2024-04-22 12:34:15 +02:00
Ricardo Wurmus
8011581794
gnu: r-tarchetypes: Update to 0.9.0. 
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.9.0.
[propagated-inputs]: Remove r-digest; add r-secretbase.

Change-Id: Ie164cebdf0bab4ef128f0023dbe73a0711893a8c
 2024-04-22 12:34:15 +02:00
Ricardo Wurmus
6a960987ce
gnu: r-factominer: Update to 2.11. 
* gnu/packages/cran.scm (r-factominer): Update to 2.11.

Change-Id: Id24133b66e55ef6b41710dbc98cbb3daf2ef4b9f
 2024-04-22 12:34:14 +02:00
Ricardo Wurmus
d6ee393bad
gnu: r-seriation: Update to 1.5.5. 
* gnu/packages/cran.scm (r-seriation): Update to 1.5.5.

Change-Id: I1632302f747d4f64e0b26baf9213525c05b6bacb
 2024-04-22 12:34:14 +02:00
Ricardo Wurmus
22030634ef
gnu: python-commonroad-io: Relax requirements. 
* gnu/packages/simulation.scm (python-commonroad-io)[arguments]: Accept 3.20.2
when 3.20.1 is wanted.

Change-Id: I5ad0689f827eda8ec1a7ec74008d04fb6d9f5870
 2024-04-22 11:29:31 +02:00
Ricardo Wurmus
c0c713be66
gnu: python-omegaconf: Fix build system errors. 
* gnu/packages/python-xyz.scm (python-omegaconf)[arguments]: Fix syntax error
in version specification; do not trigger errors on deprecation warnings.

Change-Id: Ida873c11255ffb65d888378cdd77a9205163016a
 2024-04-22 11:29:31 +02:00
Ricardo Wurmus
a78de8f792
gnu: python-deeptools: Replace python-nose with python-pytest. 
* gnu/packages/bioinformatics.scm (python-deeptools)[native-inputs]: Replace
python-nose with python-pytest.

Change-Id: Icba4ed3a464bfa36616aabe2cbbb26bfabec40aa
 2024-04-22 11:29:31 +02:00
Ricardo Wurmus
f0268853de
gnu: java-easymock-class-extension: Use java-asm-8. 
This is necessary to avoid invalid instructions coming from the incompatible
build of java-asm.

* gnu/packages/java.scm (java-easymock-class-extension)[inputs]: Replace
java-asm with java-asm-8.

Change-Id: Iff11a54fe62ba71a6d5e62fe80c08b1539c6cee0
 2024-04-22 11:29:31 +02:00
Ricardo Wurmus
d6af13222e
gnu: python-pydantic-2: Ignore sensitive tests. 
* gnu/packages/python-xyz.scm (python-pydantic-2)[arguments]: Ignore north
star tests.

Change-Id: Ic305f95f8d1399a4d777dad35fcee9e28f16c907
 2024-04-22 11:29:31 +02:00
Ricardo Wurmus
2632660295
gnu: python-asdf-astropy: Add missing test inputs. 
* gnu/packages/astronomy.scm (python-asdf-astropy)[native-inputs]: Add
python-pytest and python-pytest-xdist.

Change-Id: I1b08cf3937d4d17e034bebf6c1e971e43ca79839
 2024-04-22 11:29:30 +02:00
Ricardo Wurmus
789286ebd9
gnu: python-zarr: Update to 2.17.2. 
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.17.2.
[arguments]: Delete two flaky tests.

Change-Id: I1ab1c90f17d17a03c6cd76bbeb9112df741cc9c6
 2024-04-22 11:29:30 +02:00
Ricardo Wurmus
e6586f55e0
gnu: python-xarray-dataclasses: Add missing test input. 
* gnu/packages/python-science.scm (python-xarray-dataclasses)[native-inputs]:
Add python-pytest.

Change-Id: I137d49380d772f11f75837aa9a915ced85cfc1a2
 2024-04-22 11:29:30 +02:00
Ricardo Wurmus
7244fb26bd
gnu: cpplint: Use pyproject-build-system. 
* gnu/packages/cpp.scm (cpplint)[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.

Change-Id: I270de2cafe75ef2d7280dee884a0aeb060f2aa32
 2024-04-22 11:29:30 +02:00
Ricardo Wurmus
061c7bc1ca
gnu: python-pandas-2: Skip expensive tests. 
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Set PANDAS_CI
variable.

Change-Id: I7c400ff260b3c833be1a55a30de021a81a5cbacb
 2024-04-22 11:29:30 +02:00