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22019 commits

Author SHA1 Message Date
Danny Milosavljevic
f6cccefed5
gnu: ghc: Make memory allocator decommit memory on Linux < 4.5. 
* gnu/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/haskell.scm (ghc-8): Use it.
 2018-02-16 12:41:01 -05:00
Ricardo Wurmus
4aa0a1df2d
gnu: java-jeromq: Update to 0.4.3. 
* gnu/packages/java.scm (java-jeromq): Update to 0.4.3.
[arguments]: Disable DealerSpecTest.
 2018-02-15 17:19:09 +01:00
Ricardo Wurmus
36b39d1618
gnu: java-testng: Update to 6.14.2. 
* gnu/packages/java.scm (java-testng): Update to 6.14.2.
[arguments]: Delete failing tests and those requiring groovy.
[native-inputs]: Add java-mockito-1.
 2018-02-15 17:19:06 +01:00
Ricardo Wurmus
152d30c346
gnu: Add python-loompy. 
* gnu/packages/bioinformatics.scm (python-loompy): New variable.
 2018-02-15 17:19:00 +01:00
Ricardo Wurmus
3082de04c2
gnu: Add r-dropbead. 
* gnu/packages/bioinformatics.scm (r-dropbead): New variable.
 2018-02-15 17:18:54 +01:00
Ricardo Wurmus
05f7296012
gnu: Add r-delayedmatrixstats. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): New variable.
 2018-02-15 17:18:52 +01:00
Ricardo Wurmus
fc162dbaec
gnu: Add python-typing. 
* gnu/packages/python.scm (python-typing, python2-typing): New variables.
 2018-02-15 17:18:50 +01:00
Ricardo Wurmus
130d290e29
gnu: Add python-future-fstrings. 
* gnu/packages/python.scm (python-future-fstrings): New variable.
 2018-02-15 17:18:46 +01:00
Ricardo Wurmus
8b2ad13b19
gnu: Add python-tokenize-rt. 
* gnu/packages/python.scm (python-tokenize-rt): New variable.
 2018-02-15 17:18:43 +01:00
Ricardo Wurmus
e035589482
gnu: augeas: Update to 1.10.1. 
* gnu/packages/augeas.scm (augeas): Update to 1.10.1.
 2018-02-15 17:17:19 +01:00
Mark H Weaver
84fe44201b
gnu: magit: Do not set 'magit-git-executable' to absolute file name. 
Fixes <https://bugs.gnu.org/30434>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* gnu/packages/emacs.scm (magit)[arguments]: Do not modify the default value
of 'magit-git-executable'.  Remove "#:modules" and "#:imported-modules".
 2018-02-14 03:42:07 -05:00
Mark H Weaver
02843215d8
gnu: shepherd: 'herd status' now sorts the result. 
Add a patch by Ludovic Courtès <ludo@gnu.org> from the upstream
shepherd repository to partially fix <https://bugs.gnu.org/30299>.

* gnu/packages/patches/shepherd-herd-status-sorted.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shepherd)[source]: Add patch.
 2018-02-14 03:42:02 -05:00
Mark H Weaver
932c98326d
Merge branch 'master' into core-updates 2018-02-14 03:40:08 -05:00
Rutger Helling
870541d6a7
gnu: mpv: Enable Vulkan support. 
* gnu/packages/video.scm (mpv)[inputs]: Add shaderc and vulkan-icd-loader.
 2018-02-14 08:18:58 +01:00
Rutger Helling
5b69baf0ad
gnu: Add shaderc. 
* gnu/packages/vulkan.scm (shaderc): New variable.
 2018-02-14 08:18:58 +01:00
Mark H Weaver
c5971d473d
gnu: icecat: Add more fixes from upstream mozilla-esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
 2018-02-13 19:53:35 -05:00
Marius Bakke
4af55f7657
gnu: freeipmi: Update to 1.6.1. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.1.
 2018-02-13 23:52:39 +01:00
Danny Milosavljevic
a32f9b59ab
system: make-u-boot-package: Install configuration file. 
* gnu/packages/bootloaders.scm (make-u-boot-package): Install configuration
file.
 2018-02-13 23:23:25 +01:00
Marius Bakke
b2b2ba40c3
gnu: efivar: Update to 34. 
* gnu/packages/linux.scm (efivar): Update to 34.
[arguments]: Add CC_FOR_BUILD=gcc to #:make-flags.
 2018-02-13 23:02:03 +01:00
Marius Bakke
8b114e5bd9
gnu: feh: Update to 2.23.2. 
* gnu/packages/image-viewers.scm (feh): Update to 2.23.2.
 2018-02-13 23:02:03 +01:00
Ben Woodcroft
119c09c219
gnu: vsearch: Update to 2.7.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.0.
 2018-02-14 07:43:19 +10:00
Efraim Flashner
34a7b7d713
gnu: libdvdnav@4: Remove variable. 
* gnu/packages/video.scm (libdvdnav@4): Remove variable.
 2018-02-13 22:56:51 +02:00
Efraim Flashner
0976ea38b1
gnu: libdvdnav: Update to 6.0.0. 
* gnu/packages/video.scm (libdvdnav): Update to 6.0.0.
 2018-02-13 22:56:50 +02:00
Efraim Flashner
3c9deb0b11
gnu: libdvdread: Update to 6.0.0. 
* gnu/packages/video.scm (libdvdread): Update to 6.0.0.
 2018-02-13 22:56:50 +02:00
Efraim Flashner
975c715a41
gnu: x265: Update to 2.6. 
* gnu/packages/video.scm (x265): Update to 2.6.
 2018-02-13 22:56:48 +02:00
Efraim Flashner
1373ce7ce0
gnu: ffmpeg: Update to 3.4.2. 
* gnu/packages/video.scm (ffmpeg): Update to 3.4.2.
 2018-02-13 22:56:44 +02:00
Leo Famulari
5c4fd60416
gnu: python-icalendar: Update to 4.0.1. 
* gnu/packages/python.scm (python-icalendar): Update to 4.0.1.
 2018-02-13 14:33:22 -05:00
Mark H Weaver
288b8fd5e9
Merge branch 'master' into core-updates 2018-02-13 13:17:15 -05:00
Mark H Weaver
acff6aa004
gnu: linux-libre: Update to 4.15.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.3.
(%linux-libre-hash): Update hash.
 2018-02-13 13:08:30 -05:00
Mark H Weaver
146be91dda
gnu: linux-libre@4.14: Update to 4.14.19. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.19.
(%linux-libre-4.14-hash): Update hash.
 2018-02-13 13:07:48 -05:00
Mark H Weaver
47b731b372
gnu: linux-libre@4.9: Update to 4.9.81. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.81.
 2018-02-13 13:06:28 -05:00
Ricardo Wurmus
117c83bdc7
gnu: r-htmltable: Update to 1.11.2. 
* gnu/packages/web.scm (r-htmltable): Update to 1.11.2.
[propagated-inputs]: Remove r-dplyr and r-tidyr.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
7d358f33d8
gnu: r-htmlwidgets: Update to 1.0. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
1ee14481d2
gnu: r-lubridate: Update to 1.7.2. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.2.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
4ff5fc6fa0
gnu: r-ranger: Update to 0.9.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.9.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
f9ee1741f9
gnu: r-lme4: Update to 1.1-15. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-15.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
45ec40818b
gnu: r-quantreg: Update to 5.35. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.35.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
725673ad6f
gnu: r-rcppeigen: Update to 0.3.3.4.0. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.4.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
c71cd58240
gnu: r-pbapply: Update to 1.3-4. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-4.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
f66a34fcc4
gnu: r-vgam: Update to 1.0-5. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-5.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
09da3d4403
gnu: r-fpc: Update to 2.1-11. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
23fb604725
gnu: r-pcapp: Update to 1.9-73. 
* gnu/packages/statistics.scm (r-pcapp): Update to 1.9-73.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
fe394eac82
gnu: r-zoo: Update to 1.8-1. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-1.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
b216fdf21f
gnu: r-hmisc: Update to 4.1-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.1-1.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus
c4f148ab0a
gnu: r-tidyr: Update to 0.8.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus
be8db0a0ab
gnu: r-viridislite: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.3.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus
9604af890d
gnu: r-viridis: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.5.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus
a46c71924c
gnu: r-matrixstats: Update to 0.53.1. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.53.1.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus
e04b71a83b
gnu: r-mvtnorm: Update to 1.0-7. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-7.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus
f7d7dd41f1
gnu: r-r-rsp: Update to 0.42.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.42.0.
[propagated-inputs]: Add r-digest.
 2018-02-13 16:18:44 +01:00