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Author SHA1 Message Date
Tobias Geerinckx-Rice
f7c3a2a86e
gnu: ddcutil: Update to 1.4.2. 
* gnu/packages/hardware.scm (ddcutil): Update to 1.4.2.
 2023-07-16 02:16:36 +02:00
Tobias Geerinckx-Rice
ba9fdaa814
gnu: diffoscope: Don't embed build-time references. 
* gnu/packages/diffoscope.scm (diffoscope)[arguments]:
Avoid using WHICH in the 'embed-tool-references phase.
 2023-07-16 02:00:11 +02:00
Tobias Geerinckx-Rice
aeb6cdacbc
gnu: diffoscope: Use G-expressions. 
* gnu/packages/diffoscope.scm (diffoscope)[arguments]:
Rewrite as G-expressions.
 2023-07-16 02:00:10 +02:00
Tobias Geerinckx-Rice
2db3fa4a76
gnu: diffoscope: Update to 244. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 244.
 2023-07-16 02:00:10 +02:00
Tobias Geerinckx-Rice
62bd53dbb9
gnu: sdcv: Update to 0.5.5. 
* gnu/packages/dictionaries.scm (sdcv): Update to 0.5.5.
[arguments]: ...don't we?  Remove the 'remove-jq-requirement phase.
[native-inputs]: Add jq.
 2023-07-16 02:00:10 +02:00
Tobias Geerinckx-Rice
b499be6e20
gnu: xandikos: Update to 0.2.8. 
* gnu/packages/dav.scm (xandikos): Update to 0.2.8.
 2023-07-16 02:00:10 +02:00
Tobias Geerinckx-Rice
ae8a4de141
gnu: virtuoso-ose: Use G-expressions. 
* gnu/packages/databases.scm (virtuoso-ose)[arguments]:
Rewrite as G-expressions.
 2023-07-16 02:00:10 +02:00
Tobias Geerinckx-Rice
560e61e5eb
gnu: virtuoso-ose: Update to 7.2.10. 
* gnu/packages/databases.scm (virtuoso-ose): Update to 7.2.10.
 2023-07-16 02:00:10 +02:00
Tobias Geerinckx-Rice
25e4acb84e
gnu: vdirsyncer: Use G-expressions. 
* gnu/packages/dav.scm (vdirsyncer)[arguments]:
Rewrite as G-expressions.
 2023-07-16 02:00:09 +02:00
Tobias Geerinckx-Rice
a4a47b49c8
gnu: vdirsyncer: Update to 0.19.2. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.19.2.
 2023-07-16 02:00:09 +02:00
Tobias Geerinckx-Rice
6c67d3b026
gnu: redis: Update to 7.0.12. 
* gnu/packages/databases.scm (redis): Update to 7.0.12.
[arguments]: Ever so slightly tweak style.
 2023-07-16 02:00:01 +02:00
Tobias Geerinckx-Rice
4d87d98aee
gnu: redis: Fetch over HTTPS. 
* gnu/packages/databases.scm (redis)[source]: Use HTTPS.
 2023-07-16 02:00:01 +02:00
Tobias Geerinckx-Rice
416927772d
gnu: trurl: Improve description. 
* gnu/packages/curl.scm (trurl)[synopsis]: Fix typo.
[description]: Reorder & tighten.
 2023-07-16 02:00:01 +02:00
Tobias Geerinckx-Rice
a08d0b0baf
gnu: trurl: Update to 0.8. 
* gnu/packages/curl.scm (trurl): Update to 0.8.
 2023-07-16 02:00:00 +02:00
Ricardo Wurmus
ad457d0114
gnu: r-experimenthub: Update to 2.8.1. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.8.1.
 2023-07-17 14:55:08 +02:00
Ricardo Wurmus
22db2a63fe
gnu: r-flowcore: Update to 2.12.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.12.1.
 2023-07-17 14:55:08 +02:00
Ricardo Wurmus
2b5b595708
gnu: r-clusterprofiler: Update to 4.8.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.8.2.
 2023-07-17 14:55:08 +02:00
Ricardo Wurmus
79b508e3f6
gnu: r-gosemsim: Update to 2.26.1. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.26.1.
 2023-07-17 14:55:07 +02:00
Ricardo Wurmus
d29a060d20
gnu: r-icobra: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.28.1.
 2023-07-17 14:55:07 +02:00
Ricardo Wurmus
d1979fe4bb
gnu: r-treeio: Update to 1.24.2. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.2.
 2023-07-17 14:55:07 +02:00
Ricardo Wurmus
6f9894d63c
gnu: r-affycomp: Update to 1.76.1. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.1.
 2023-07-17 14:55:07 +02:00
Ricardo Wurmus
ed58e991f5
gnu: r-puniform: Update to 0.2.6. 
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.6.
 2023-07-17 14:19:54 +02:00
Ricardo Wurmus
a450a5aafa
gnu: r-clubsandwich: Update to 0.5.9. 
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.9.
 2023-07-17 14:19:54 +02:00
Ricardo Wurmus
7d6bdd1c8a
gnu: r-matrixmodels: Update to 0.5-2. 
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-2.
 2023-07-17 14:19:54 +02:00
Ricardo Wurmus
b5fede2809
gnu: r-deoptimr: Update to 1.1-0. 
* gnu/packages/statistics.scm (r-deoptimr): Update to 1.1-0.
 2023-07-17 14:19:54 +02:00
Ricardo Wurmus
f96c109be9
gnu: r-mgcv: Update to 1.9-0. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.9-0.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
8029b180bd
gnu: r-ggh4x: Update to 0.2.5. 
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.5.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
a28d88e847
gnu: r-stars: Update to 0.6-2. 
* gnu/packages/cran.scm (r-stars): Update to 0.6-2.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
f702efa97e
gnu: r-seewave: Update to 2.2.1. 
* gnu/packages/cran.scm (r-seewave): Update to 2.2.1.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
4a6843b3b3
gnu: r-sccore: Update to 1.0.4. 
* gnu/packages/cran.scm (r-sccore): Update to 1.0.4.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
2824b8949d
gnu: r-sf: Update to 1.0-14. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-14.
[inputs]: Add curl, openssh, openssl, pcre2, and zlib.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
fa0788a9b4
gnu: r-longdat: Update to 1.1.2. 
* gnu/packages/cran.scm (r-longdat): Update to 1.1.2.
 2023-07-17 14:19:53 +02:00
Ricardo Wurmus
b071105584
gnu: r-tidytree: Update to 0.4.4. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.4.4.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
2f5903c51a
gnu: r-rcppalgos: Update to 2.8.0. 
* gnu/packages/cran.scm (r-rcppalgos): Update to 2.8.0.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
892f9dba8a
gnu: r-doby: Update to 4.6.17. 
* gnu/packages/cran.scm (r-doby): Update to 4.6.17.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
b23bfb6de5
gnu: r-ctrdata: Update to 1.14.0. 
* gnu/packages/cran.scm (r-ctrdata): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
a20818b3e8
gnu: r-rcppspdlog: Update to 0.0.14. 
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.14.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
ecb9e3e180
gnu: r-gensa: Update to 1.1.9. 
* gnu/packages/cran.scm (r-gensa): Update to 1.1.9.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
01be464993
gnu: r-sass: Update to 0.4.7. 
* gnu/packages/cran.scm (r-sass): Update to 0.4.7.
 2023-07-17 14:19:52 +02:00
Ricardo Wurmus
8ed1249d65
gnu: r-ggpp: Update to 0.5.3. 
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.3.
 2023-07-17 14:19:51 +02:00
Ricardo Wurmus
c30a4577a8
gnu: r-babelwhale: Update to 1.2.0. 
* gnu/packages/cran.scm (r-babelwhale): Update to 1.2.0.
 2023-07-17 14:19:51 +02:00
Ricardo Wurmus
af6b542954
gnu: r-openssl: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-openssl): Update to 2.1.0.
[properties]: Add hint to keep openssl input.
[inputs]: Add zlib.
 2023-07-17 14:18:43 +02:00
Ricardo Wurmus
eda2c23874
scripts/refresh: Remove column from spec line before sorting. 
We want to sort by file and line number, but the column number messes
everything up.

This is a follow-up to commit b43841c124.

* guix/scripts/refresh.scm (guix-refresh): Trim the digits on the right of the
location string before comparing them.
 2023-07-17 13:51:54 +02:00
Christopher Baines
ad08f9331f
gnu: simulation: Fix duplicate open-simulation-interface. 
Give the python variant a different name, and fix the build.

* gnu/packages/simulation.scm (python-open-simulation-interface)[name]: Set.
[propagated-inputs]: Add python-pyyaml and python-protobuf.
 2023-07-17 09:14:47 +01:00
Christopher Baines
22c7ac4109
gnu: gnome: Hide devhelp-with-libsoup2. 
To avoid the ambiguous package specification.

* gnu/packages/gnome.scm (devhelp-with-libsoup2): Hide package.
 2023-07-17 09:07:34 +01:00
Christopher Baines
54a74d35e6
gnu: Hide python-bcbio-gff/biopython-1.73. 
To avoid the ambiguous package specification.

* gnu/packages/bioinformatics.scm (python-bcbio-gff/biopython-1.73): Hide
package.
 2023-07-17 09:06:34 +01:00
Christopher Baines
728ed83188
gnu: Remove harfbuzz-5. 
As this package definition is redundant, harfbuzz is version 5.3.1.

* gnu/packages/gtk.scm (harfbuzz-5): Remove.
* gnu/packages/libreoffice.scm (libreoffice)[inputs]: Replace harfbuzz-5 with
harfbuzz.
* gnu/packages/qt.scm (qtwebengine)[inputs]: Remove redundant replace.
 2023-07-17 09:05:03 +01:00
Christopher Baines
c0d3d494cd
teams: Change email address for Christopher Baines. 
This will allow me to automatically detect when I'm getting emails related to
Guix teams.

* etc/teams.scm.in: Change email address for Christopher Baines.
 2023-07-17 08:52:49 +01:00
Christopher Baines
36cbd2654e
gnu: ghc-8.10: Fix build on i686-linux. 
As one profiling test fails very repeatedly on the bordeaux build farm, but
ghc did seem to build successfully on other machines.

* gnu/packages/haskell.scm (ghc-8.10)[arguments]: Don't run the T11627a
profiling test on i686-linux.
 2023-07-17 08:47:10 +01:00
Danny Milosavljevic
3755941f03
gnu: jbr: Use Jetbrains' configure-flags. 
* gnu/packages/java.scm (jbr17)[arguments]<#:configure-flags>: Use Jetbrains'
configure flags.
 2023-07-17 00:14:20 +02:00