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Author SHA1 Message Date
zimoun
0ca7435fe0
gnu: guile-dbd-sqlite3: Replace 'url-fetch' by 'git-fetch'. 
Fixes https://debbugs.gnu.org/25913.

* gnu/packages/guile-xyz.scm (guile-dbi)[source]: Replace 'url-fetch'
by'git-fetch'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 01:03:24 +02:00
zimoun
82cfefc2a0
gnu: guile-dbi: Replace 'url-fetch' by 'git-fetch'. 
Fixes https://debbugs.gnu.org/25913.

* gnu/packages/guile-xyz.scm (guile-dbi)[source]: Replace 'url-fetch'
by'git-fetch'.
[home-page]: Update.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 01:03:24 +02:00
Dhruvin Gandhi
0e9b77d8d0
gnu: python-yubikey-manager: Fix libykpers reference. 
* gnu/packages/security-token.scm (python-yubikey-manager): Fix libykpers reference.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-31 01:03:24 +02:00
Ludovic Courtès
630c39d8df
gnu: onnx: Change source to 'git-fetch'. 
* gnu/packages/machine-learning.scm (onnx)[source]: Change to
'git-fetch'.  Add "onnx-skip-model-downloads.patch".
[arguments]: Add 'make-test-directory-writable' phase.
* gnu/packages/patches/onnx-skip-model-downloads.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-31 01:03:24 +02:00
Ludovic Courtès
fa2d94b5e3
gnu: python-onnx: Rename to "onnx". 
* gnu/packages/machine-learning.scm (python-onnx): Rename to...
(onnx): ... this, and change 'name' field accordingly.
(python-onnx): New variable.
* gnu/packages/patches/python-onnx-shared-libraries.patch: Rename to...
* gnu/packages/patches/onnx-shared-libraries.patch: ... this.
* gnu/packages/patches/python-onnx-use-system-googletest.patch: Rename
to...
* gnu/packages/patches/onnx-use-system-googletest.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2021-07-31 01:03:24 +02:00
Ludovic Courtès
2b55f914c3
gnu: python-onnx: Install libonnx.so and libonnx_proto.so. 
* gnu/packages/patches/python-onnx-shared-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/machine-learning.scm (python-onnx)[source]: Use it.
[arguments]: New field.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
bb5b6b09dc
gnu: python-onnx: Delete bundled software. 
* gnu/packages/machine-learning.scm (python-onnx)[source]: Delete
the 'third_party' directory.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
3ac3ca367a
gnu: python-onnx: Move comment to the patch header. 
* gnu/packages/machine-learning.scm (python-onnx): Move patch comment to...
* gnu/packages/patches/python-onnx-use-system-googletest.patch: ... here.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
5f9dc326d9
gnu: python-onnx: Update to 1.9.0. 
* gnu/packages/machine-learning.scm (python-onnx): Update to 1.9.0.
 2021-07-31 01:03:23 +02:00
Ricardo Wurmus
721e380764
gnu: liquidsfz: Use fixed libsndfile. 
* gnu/packages/music.scm (liquidsfz)[inputs]: Replace libsndfile with
libsndfile/fixed.
 2021-07-30 22:34:45 +02:00
Ricardo Wurmus
4c013867b6
gnu: Add libsndfile/fixed. 
* gnu/packages/pulseaudio.scm (libsndfile/fixed): New variable.
 2021-07-30 22:34:45 +02:00
Efraim Flashner
7041abe38a
gnu: parallel: Update to 20210722. 
* gnu/packages/parallel.scm (parallel): Update to 20210722.
 2021-07-30 19:17:52 +03:00
Marius Bakke
730f11ba92
gnu: python-elasticsearch: Update to 7.13.4. 
* gnu/packages/python-web.scm (python-elasticsearch): Update to 7.13.4.
[native-inputs]: Remove.
[propagated-inputs]: Add PYTHON-CERTIFI.
 2021-07-30 16:18:41 +02:00
Leo Prikler
311cc4ee65
gnu: openttd-opensmx: Update to 0.4.0. 
* gnu/packages/games.scm (openttd-opensmx): Update to 0.4.0.
[native-inputs]: Add tar.
[#:make-flags]: Drop INSTALL_DIR.  Add DIR_NAME and TAR.
[#:tests?]: New argument.
[#:phases]: Replace ‘install’ with a simple copy operation and drop
post-install.
 2021-07-30 15:22:16 +02:00
Leo Prikler
0a1df50e9f
gnu: Fix OpenSFX build. 
OpenSFX 1.0.1 uses a different build system from the old one, which causes
weird errors.

* gnu/packages/games.scm (openttd-opensfx)[native-inputs]: Add tar.
[#:make-flags]: Drop INSTALL_DIR.  Add DIR_NAME and TAR.
[#:tests?]: New argument.
[#:phases]: Add ‘prebuild’.  Replace ‘install’ with a simple copy.
 2021-07-30 15:22:16 +02:00
Eric Bavier
9b41c08f41
gnu: Add C-Vise. 
* gnu/packages/debug.scm (c-vise): New variable.
 2021-07-30 08:13:44 -05:00
Eric Bavier
f71b91a22b
gnu: Add python-pebble. 
* gnu/packages/python-xyz.scm (python-pebble): New variable.
 2021-07-30 08:13:38 -05:00
Leo Prikler
1484de9eff
gnu: Fix OpenSFX URI. 
In commit 1cdf1cd7fe, the URI was updated to the
wrong value and the hash not updated at all, so people would erroneously fetch
the old package from a wrong description.

* gnu/packages/games.scm (openttd-opensfx)[uri]: Use
<https://cdn.openttd.org/opensfx-releases>.
[sha256]: Update accordingly.
 2021-07-30 14:29:21 +02:00
Leo Prikler
e638a9a1f7
gnu: openttd-opengfx: Update to 0.6.1. 
* gnu/packages/games.scm (openttd-opengfx): Update to 0.6.1.
 2021-07-30 10:01:31 +02:00
Ron Nazarov
65e1d39f9f
licenses: Remove CC-Sampling+-1.0. 
* guix/licenses.scm (cc-sampling-plus-1.0): Remove variable.
 2021-07-30 10:01:31 +02:00
Ron Nazarov
1cdf1cd7fe
gnu: openttd-opensfx: Update to 1.0.1. 
* gnu/packages/games.scm (openttd-opensfx): Update to 1.0.1.
[source]: Use <https://cdn.openttd.org>.
[license]: Update to CC BY-SA 3.0.
 2021-07-30 10:00:42 +02:00
Nicolas Goaziou
9f48f71398
gnu: emacs-string-inflection: Update to 1.0.14. 
* gnu/packages/emacs-xyz.scm (emacs-string-inflection): Update to 1.0.14.
 2021-07-30 08:34:29 +02:00
Maxim Cournoyer
daeef2e7f4
gnu: Add createrepo-c. 
* gnu/packages/rpm.scm (createrepo-c): New variable.
 2021-07-29 22:03:34 -04:00
Maxim Cournoyer
0413e90ab1
gnu: Add libmodulemd. 
* gnu/packages/rpm.scm (libmodulemd): New variable.
 2021-07-29 22:03:34 -04:00
Maxim Cournoyer
4613a9948a
gnu: Add drpm. 
* gnu/packages/rpm.scm: Add file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
 2021-07-29 22:03:34 -04:00
Maxim Cournoyer
e81228166e
gnu: web: Move libyaml and libcyaml to (gnu packages serialization). 
Files to be adjusted were searched with the following command:

 $ git ls-files | xargs grep -l -E ',libc?yaml' | \
       xargs grep -L '(gnu packages serialization)'

* gnu/packages/web.scm (libyaml, libyaml+static, libcyaml): Move to...
* gnu/packages/serialization.scm: ... here.
 2021-07-29 22:03:33 -04:00
Maxim Cournoyer
84fa28234f
gnu: Add zchunk. 
* gnu/packages/compression.scm (zchunk): New variable.
 2021-07-29 22:03:33 -04:00
Jack Hill
00c55e856f
gnu: Add nginx-rtmp-module. 
* gnu/packages/web.scm (nginx-rtmp-module): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-07-29 21:54:55 +02:00
Ludovic Courtès
b402a3ec86
gnu: Add XNNPACK. 
* gnu/packages/machine-learning.scm (xnnpack): New variable.
* gnu/packages/patches/xnnpack-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-29 21:54:55 +02:00
Ludovic Courtès
1daa662722
gnu: Add FP16. 
* gnu/packages/patches/fp16-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (fp16): New variable.
 2021-07-29 21:54:55 +02:00
Ludovic Courtès
065d45e8a1
gnu: Add Psimd. 
* gnu/packages/parallel.scm (psimd): New variable.
 2021-07-29 21:54:55 +02:00
Ludovic Courtès
4c5ad82780
gnu: Add cpuinfo. 
* gnu/packages/parallel.scm (cpuinfo): New variable.
* gnu/packages/patches/cpuinfo-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-29 21:54:55 +02:00
Ludovic Courtès
646b5ad983
gnu: Add googlebenchmark. 
* gnu/packages/check.scm (googlebenchmark): New variable.
 2021-07-29 21:54:54 +02:00
Ludovic Courtès
18d04fef0f
gnu: Add pthreadpool. 
* gnu/packages/parallel.scm (pthreadpool): New variable.
* gnu/packages/patches/pthreadpool-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-29 21:54:54 +02:00
Ludovic Courtès
a9bc8a25eb
gnu: Add FXDiv. 
* gnu/packages/maths.scm (fxdiv): New variable.
* gnu/packages/patches/fxdiv-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-29 21:54:54 +02:00
Ricardo Wurmus
ffb381856d
gnu: r-xcms: Update to 3.14.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.1.
 2021-07-29 20:20:18 +02:00
Ricardo Wurmus
e06beb503c
gnu: r-reportingtools: Update to 2.32.1. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.1.
 2021-07-29 20:20:15 +02:00
Tobias Geerinckx-Rice
c022c1e5b2
gnu: php: Update to 7.4.22 [security fixes]. 
* gnu/packages/php.scm (php): Update to 7.4.22.
 2021-07-29 19:57:57 +02:00
Christopher Lemmer Webber
45235e67e4
system: Add (gnu system setuid). 
I flubbed and somehow when including the patch series, this got dropped.
Oops... should fix things again.

* gnu/system/setuid.scm: New file.
 2021-07-29 13:09:48 -04:00
Brice Waegeneire
a85ec0bf69
services: Migrate to <setuid-program>. 
* gnu/services/dbus.scm (dbus-setuid-programs, polkit-setuid-programs):
  Return setuid-programs.
* gnu/services/desktop.scm (enlightenment-setuid-programs): Return
 setuid-programs.
 (%desktop-services)[mount-setuid-helpers]: Use setuid-programs.
* gnu/services/docker.scm (singularity-setuid-programs): Return
 setuid-programs.
* gnu/services/xorg.scm(screen-locker-setuid-programs): Return
 setuid-programs.
* gnu/system.scm (%setuid-programs): Return setuid-programs.
* doc/guix.texi (Setuid Programs, operating-system Reference): Replace
  'list of G-expressions' with 'list of <setuid-program>'.
 2021-07-29 11:32:48 -04:00
Chris Lemmer-Webber
a7ac19851b
services: setuid: More configurable setuid support. 
New record <setuid-program> with fields for setting the specific user
and group, as well as specifically selecting the setuid and setgid bits,
for a program within the setuid-program-service.

* gnu/services.scm (setuid-program-file-like-deprecated): New function.
  (setuid-program-service-type): Make use of
  setuid-program->activation-gexp.  Adjust the extend property to handle
  <setuid-program>.
* gnu/build/activation.scm (activate-setuid-programs): Update to expect a
  <setuid-record> list for each program entry.
* gnu/system.scm: (operating-system-setuid-programs): Renamed to
  %operating-system-setuid-programs and replace it with new procedure.
  (operating-system-default-essential-services,
  hurd-default-essential-services): Replace
  operating-system-setuid-programs with
  %operating-system-setuid-programs.
* gnu/system/setuid.scm: New file.
* doc/guix.texi (Setuid Programs): Document <setuid-program>.

Co-authored-by: Brice Waegeneire <brice@waegenei.re>
 2021-07-29 11:32:08 -04:00
Ricardo Wurmus
5a1ce6cf70
gnu: r-matrixstats: Update to 0.60.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.60.0.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus
2c625a4969
gnu: r-e1071: Update to 1.7-8. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-8.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus
234549dbfe
gnu: r-protolite: Update to 2.1.1. 
* gnu/packages/cran.scm (r-protolite): Update to 2.1.1.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus
d9a5c8b7e3
gnu: r-lwgeom: Update to 0.2-7. 
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-7.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus
03260ba1a4
gnu: r-mgsub: Update to 1.7.3. 
* gnu/packages/cran.scm (r-mgsub): Update to 1.7.3.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus
1d2b6230da
gnu: r-matrixcalc: Update to 1.0-5. 
* gnu/packages/cran.scm (r-matrixcalc): Update to 1.0-5.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus
a648eaa915
gnu: r-leiden: Update to 0.3.9. 
* gnu/packages/cran.scm (r-leiden): Update to 0.3.9.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus
4b322909d4
gnu: r-dalex: Update to 2.3.0. 
* gnu/packages/cran.scm (r-dalex): Update to 2.3.0.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus
75318afcdf
gnu: r-sf: Update to 1.0-2. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-2.
 2021-07-29 17:11:09 +02:00