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Author SHA1 Message Date
Efraim Flashner
5381d5c49f
gnu: Add rust-regex-0.2. 
* gnu/packages/crates-io.scm (rust-regex-0.2): New variable.
 2020-01-21 16:23:56 +02:00
Efraim Flashner
2f1fe591d1
gnu: Add rust-env-logger-0.4. 
* gnu/packages/crates-io.scm (rust-env-logger-0.4): New variable.
 2020-01-21 16:23:56 +02:00
John Soo
272004aee5
gnu: Add rust-mio-named-pipes-0.1. 
* gnu/packages/crates-io.scm (rust-mio-named-pipes-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:56 +02:00
John Soo
7fcc421e8a
gnu: Add rust-tokio-process-0.2. 
* gnu/packages/crates-io.scm (rust-tokio-process-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:56 +02:00
John Soo
874a5bc61d
gnu: Add rust-tokio-signal-0.2. 
* gnu/packages/crates-io.scm (rust-tokio-signal-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:56 +02:00
John Soo
8eeb7794ba
gnu: rust-cc-1.0: Update to 1.0.50. 
* gnu/packages/crates-io.scm (rust-cc-1.0): Update to 1.0.50.
[arguments]: Remove rust-rayon-1.1 from cargo-inputs, add
rust-jobserver-0.1. Remove rust-tempdir-0.3 from
cargo-development-inputs, add rust-tempfile-3.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:55 +02:00
John Soo
a62d3de704
gnu: rust-quick-error-1.2: Don't hide package. 
* gnu/packages/crates-io.scm (rust-quick-error-1.2)[arguments]: Skip build.
[properties] Remove field.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:55 +02:00
John Soo
b72648d7f5
gnu: rust-quick-error-1.2: Update to 1.2.3. 
* gnu/packages/crates-io.scm (rust-quick-error-1.2): Update to 1.2.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:55 +02:00
Efraim Flashner
922b65d05e
gnu: Add rust-rand-0.5. 
* gnu/packages/crates-io.scm (rust-rand-0.5): New variable.
 2020-01-21 16:23:55 +02:00
John Soo
5e5ca33cd9
gnu: Add rust-hashbrown-0.5. 
* gnu/packages/crates-io.scm (rust-hashbrown-0.5): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:55 +02:00
John Soo
c0e73f92ba
gnu: Add rust-rustc-std-workspace-alloc-1.0. 
* gnu/packages/crates-io.scm (rust-rustc-std-workspace-alloc-1.0): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:54 +02:00
John Soo
ef2f6487d7
gnu: rust-regex-syntax-0.6: Update to 0.6.13. 
* gnu/packages/crates-io.scm (rust-regex-syntax-0.6): Update to 0.6.13.
[arguments]: Remove rust-ucd-util-0.1 from cargo-inputs.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:54 +02:00
John Soo
21f887c355
gnu: rust-serde-derive-1.0: Update to 1.0.104. 
* gnu/packages/crates-io.scm (rust-serde-derive-1.0): Update it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:54 +02:00
John Soo
77a164a723
gnu: Add rust-argon2rs-0.2. 
* gnu/packages/crates-io.scm (rust-argon2rs-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:54 +02:00
John Soo
7a7ff5d36c
gnu: Add rust-term-size-0.3. 
* gnu/packages/crates-io.scm (rust-term-size-0.3): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:54 +02:00
John Soo
5a9e88c7d1
gnu: Add rust-term-size-1.0. 
* gnu/packages/crates-io.scm (rust-term-size-1.0): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:53 +02:00
John Soo
b43885e9e2
gnu: Add rust-redox-users-0.3. 
* gnu/packages/crates-io.scm (rust-redox-users-0.3): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:53 +02:00
John Soo
e320b20650
gnu: Add rust-blake2-rfc-0.2. 
* gnu/packages/crates-io.scm (rust-blake2-rfc-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:53 +02:00
John Soo
cb806c7c63
gnu: Add rust-dirs-sys-0.3. 
* gnu/packages/crates-io.scm (rust-dirs-sys-0.3): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:53 +02:00
John Soo
b6510b1a62
gnu: rust-serde-yaml-0.8: Update to 0.8.11. 
* gnu/packages/crates-io.scm (rust-serde-yaml-0.8): Update to 0.8.11.
[arguments]: Remove rust-version-sync-0.8 from cargo-development-inputs.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:53 +02:00
John Soo
ea78979dd4
gnu: rust-serde-json-1.0: Update to 1.0.44. 
* gnu/packages/crates-io.scm (rust-serde-json-1.0): Update to 1.0.44.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:52 +02:00
John Soo
ec438ab295
gnu: rust-serde-cbor-0.10: Update to 0.10.2. 
* gnu/packages/crates-io.scm (rust-serde-cbor-0.10): Update 0.10.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:52 +02:00
John Soo
27f158ef23
gnu: rust-serde-1.0: Update to 1.0.104. 
* gnu/packages/crates-io.scm (rust-serde-1.0): Update to 1.0.104.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:52 +02:00
John Soo
30b36e524a
gnu: Add rust-dirs-2.0. 
* gnu/packages/crates-io.scm (rust-dirs-2.0): New variable.
(rust-dirs-1.0): Inherit from rust-dirs-2.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:52 +02:00
John Soo
39bb7b29d9
gnu: Add rust-regex-1.3. 
* gnu/packages/crates-io.scm (rust-regex-1.3): New variable.
(rust-regex-1.1): Inherit from rust-regex-1.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:52 +02:00
John Soo
04020a73b3
gnu: Add rust-handlebars-2.0. 
* gnu/packages/crates-io.scm (rust-handlebars-2.0): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-01-21 16:23:48 +02:00
Ludovic Courtès
b2f948be9f
services: sane: Create the "scanner" account. 
* gnu/services/desktop.scm (%sane-accounts, sane-service-type): New
variables.
(%desktop-services): Use SANE-SERVICE-TYPE instead of 'simple-service'.
* doc/guix.texi (Desktop Services): Document 'sane-service-type'.
 2020-01-21 15:01:46 +01:00
Ludovic Courtès
5dc6d5ce99
gnu: upower: Install 'dbus-1/system.d/org.freedesktop.UPower.conf' to etc/. 
Fixes <https://bugs.gnu.org/39203>.
Reported by Jesse Gibbons <jgibbons2357@gmail.com>.

* gnu/packages/gnome.scm (upower)[source]: Add 'modules' and 'snippet'.
 2020-01-21 15:01:46 +01:00
Tobias Geerinckx-Rice
a19fb6a436
gnu: Use HTTPS for (gnu packages bioinformatics) home pages. 
* gnu/packages/bioinformatics (bamm, ribodiff, python-biopython)
(discrover, hisat, hisat2, htseq, fastqc, htslib, python2-pbcore, roary)
(sortmerna, r-qtl, multiqc, r-deseq, r-fastseg, sambamba, trim-galore)
(gess, kentutils, bismark, kallisto, sailfish, python-hicexplorer)
(pplacer, python2-checkm-genome, r-velocyto)[home-page]: Use HTTPS.
 2020-01-21 02:15:32 +01:00
Tobias Geerinckx-Rice
72607005e4
gnu: r-gage: Update home page. 
* gnu/packages/bioinformatics.scm (r-gage)[home-page]: Update.
 2020-01-21 02:15:32 +01:00
Tobias Geerinckx-Rice
0388046068
gnu: sra-tools: Update home page. 
* gnu/packages/bioinformatics.scm (sra-tools)[home-page]: Update.
 2020-01-21 02:15:31 +01:00
Tobias Geerinckx-Rice
0eeaf1ac3c
gnu: raxml: Update home page. 
* gnu/packages/bioinformatics.scm (raxml)[home-page]: Update.
 2020-01-21 02:15:31 +01:00
Tobias Geerinckx-Rice
5832b88c45
gnu: prodigal: Update home page. 
* gnu/packages/bioinformatics.scm (prodigal)[home-page]: Use source code repository as home page.
 2020-01-21 02:15:31 +01:00
Tobias Geerinckx-Rice
030fe2fb7e
gnu: miso: Update home page. 
* gnu/packages/bioinformatics.scm (miso)[home-page]: Update.
 2020-01-21 02:15:31 +01:00
Tobias Geerinckx-Rice
b725655fce
gnu: grit: Update home page. 
* gnu/packages/bioinformatics.scm (grit)[home-page]: Use source code
repository as home page.
 2020-01-21 02:15:31 +01:00
Tobias Geerinckx-Rice
b56f2b6366
gnu: express-beta-diversity: Update home page. 
The original is not coming back:
<https://github.com/dparks1134/ExpressBetaDiversity/issues/11>.

* gnu/packages/bioinformatics.scm (express-beta-diversity)[home-page]:
Use source code repository as home page.
 2020-01-21 02:15:31 +01:00
Tobias Geerinckx-Rice
568bd2e382
gnu: dendropy: Update home page. 
* gnu/packages/bioinformatics.scm (dendropy)[home-page]: Update.
 2020-01-21 02:15:31 +01:00
Julien Lepiller
5aa573d8c7
gnu: ocaml-markup: Update to 0.8.2. 
gnu/packages/ocaml.scm (ocaml-markup): Update to 0.8.2.
 2020-01-21 01:12:26 +01:00
Julien Lepiller
16829d3b8a
gnu: ocaml-lwt: Update to 5.1.1. 
* gnu/packages/ocaml.scm (ocaml-lwt): update to 5.1.1.
 2020-01-21 01:12:05 +01:00
Julien Lepiller
2624921a64
gnu: Add ocaml-mmap. 
* gnu/packages/ocaml.scm (ocaml-mmap): New variable.
 2020-01-21 01:11:39 +01:00
Julien Lepiller
2e038f36f8
gnu: ocaml-bisect-ppx: Update to 1.4.2. 
* gnu/packages/ocaml.scm (ocaml-bisect-ppx): Update to 1.4.2.
 2020-01-21 01:11:35 +01:00
Julien Lepiller
73e01ae456
gnu: ocaml-qtest. Update to 2.10.1. 
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.10.1.
 2020-01-21 01:11:31 +01:00
Julien Lepiller
795cf2a3b5
gnu: ocaml-qcheck: Update to 0.12. 
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.12.
 2020-01-21 01:11:20 +01:00
Julien Lepiller
c2eb8c7ef7
gnu: camlp5: Update to 7.10. 
* gnu/packages/ocaml.scm (camlp5): Upadte to 7.10.
 2020-01-21 01:10:49 +01:00
Julien Lepiller
efeda080ef
gnu: opam: Update to 2.0.6. 
* gnu/pckages/ocaml.scm (opam): Update to 2.0.6.
 2020-01-21 01:10:42 +01:00
Tobias Geerinckx-Rice
99db6db7be
gnu: Use HTTPS for bioconductor.org. 
* gnu/packages/bioinformatics.scm (r-homo-sapiens)[source]: Use HTTPS.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked,
r-cghcall, r-diffbind, r-cghbase, r-ripseeker, r-chippeakanno,
r-qdnaseq, r-marray, r-multtest)[home-page]: Likewise.
* gnu/packages/graph.scm (r-rgraphviz)[home-page]: Likewise.
 2020-01-21 00:43:39 +01:00
Tobias Geerinckx-Rice
570b89f401
gnu: gzdoom: Update to 4.3.2. 
* gnu/packages/games.scm (gzdoom): Update to 4.3.2.
[source]: Use GIT-FETCH and GIT-FILE-NAME.  Apply system libgme patch.
Update snippet.
[arguments]: Allow system libgme.  Update substitution file names.
[inputs]: Use fluidsynth@2.
* gnu/packages/patches/gzdoom-find-system-libgme.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2020-01-21 00:43:24 +01:00
Tobias Geerinckx-Rice
21e733ce4e
gnu: supercollider: Update to 3.10.4. 
* gnu/packages/audio.scm (supercollider): Update to 3.10.4.
[source]: Remove patch.
* gnu/packages/patches/supercollider-boost-1.70-build-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-01-21 00:43:24 +01:00
Ricardo Wurmus
fa730a9780
Revert "gnu: Add guile3.0-commonmark." 
This reverts commit 346386f3f7.

A Guile 3.0 variant had already been added with commit
1fa3423236.
 2020-01-21 00:05:50 +01:00
Ricardo Wurmus
77c95ee60c
gnu: Add guile3.0-pfds. 
* gnu/packages/guile-xyz.scm (guile3.0-pfds): New variable.
 2020-01-20 23:49:53 +01:00