Ricardo Wurmus
a7c5df07af
gnu: r-calibrate: Update to 1.7.7.
...
* gnu/packages/cran.scm (r-calibrate): Update to 1.7.7.
2020-06-22 12:15:50 +02:00
Ricardo Wurmus
5195eeeb07
gnu: r-htmltable: Update to 2.0.0.
...
* gnu/packages/cran.scm (r-htmltable): Update to 2.0.0.
[native-inputs]: Add r-knitr.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
3841f83396
gnu: r-htmltools: Update to 0.5.0.
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* gnu/packages/cran.scm (r-htmltools): Update to 0.5.0.
[propagated-inputs]: Remove r-rcpp; add r-base64enc.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
cac8cfbc46
gnu: r-v8: Update to 3.2.0.
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* gnu/packages/cran.scm (r-v8): Update to 3.2.0.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
ebcebc59ab
gnu: r-hdf5array: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.1.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
b07e53bb09
gnu: r-rhdf5: Update to 2.32.1.
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* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.1.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
f65d5e84de
gnu: r-biomart: Update to 2.44.1.
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* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.44.1.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
55401384dc
gnu: r-genomeinfodb: Update to 1.24.2.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.24.2.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
f7d5721bc2
gnu: r-gdsfmt: Update to 1.24.1.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
1893092d58
gnu: r-cicero: Update to 1.6.1.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1.
[propagated-inputs]: Add r-stringi.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
ef58875705
gnu: r-cytoml: Update to 2.0.5.
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* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5.
[propagated-inputs]: Add r-xml2.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
015ff0bf18
gnu: r-wiggleplotr: Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
8c06ce3c22
gnu: r-regioner: Update to 1.20.1.
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* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1.
2020-06-22 12:15:49 +02:00
Ricardo Wurmus
48713c5d94
gnu: Add r-rlinsolve.
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* gnu/packages/cran.scm (r-rlinsolve): New variable.
2020-06-22 12:15:49 +02:00
Mathieu Othacehe
b7f211bbbc
gnu: cuirass: Update to 0.0.1-33-61cc56f6.
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* gnu/packages/ci.scm (cuirass): Update to 0.0.1-33-61cc56f6.
2020-06-22 10:39:24 +02:00
Mathieu Othacehe
10c582fa22
gnu: xl2tpd: Fix typo.
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* gnu/packages/vpn.scm (xl2tpd)[arguments]: Turn "-DPPD" into "-DPPPD".
2020-06-22 10:28:00 +02:00
Ricardo Wurmus
acba72b914
gnu: express: Update to 1.5.3.
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* gnu/packages/bioinformatics.scm (express): Update to 1.5.3.
[source]: Fetch from Github.
[arguments]: Add phase "remove-update-check".
2020-06-22 09:07:51 +02:00
Tobias Geerinckx-Rice
0e0b5977b7
gnu: youtube-dl: Update to 2020.06.16.
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* gnu/packages/video.scm (youtube-dl): Update to 2020.06.16.
2020-06-22 02:47:02 +02:00
Tobias Geerinckx-Rice
45ebb59a54
gnu: vmpk: Update home page.
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gnu/packages/music.scm (vmpk)[home-page]: Update TLD and use HTTPS.
2020-06-22 02:47:02 +02:00
Jakub Kądziołka
f8a28b6c6d
gnu: bison-3.6: Don't change the name of the package.
...
This is a follow-up to commit 512d23c65d
2020-06-22 02:35:55 +02:00
Mark H Weaver
5a9a438146
gnu: linux-libre@4.14: Update to 4.14.185.
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* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.185.
(linux-libre-4.14-pristine-source): Update hash.
2020-06-21 19:13:29 -04:00
Mark H Weaver
f1922ee156
gnu: linux-libre@4.9: Update to 4.9.228.
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* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.228.
(linux-libre-4.9-pristine-source): Update hash.
2020-06-21 19:13:01 -04:00
Mark H Weaver
8e5b17280c
gnu: linux-libre@4.4: Update to 4.4.228.
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* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.228.
(linux-libre-4.4-pristine-source): Update hash.
2020-06-21 19:12:04 -04:00
Peter Lo
1d97e871dd
gnu: Add r-boruta.
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* gnu/packages/statistics.scm (r-boruta): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-06-21 18:47:40 -04:00
Nicolas Goaziou
37ab7837e7
gnu: xmoto: Update to 0.6.1.
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* gnu/packages/games.scm (xmoto): Update to 0.6.1.
[arguments]: Remove phase installing man pages, now properly handled by the
installation script.
2020-06-22 00:40:10 +02:00
Nicolas Goaziou
9546891f95
gnu: emacs-relint: Update to 1.18.
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* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.18.
2020-06-21 23:51:19 +02:00
Ludovic Courtès
89ab6bfbf1
gnu: guile: Add 3.0.3.
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* gnu/packages/guile.scm (guile-3.0.3): New variable.
2020-06-21 23:37:29 +02:00
Nicolas Goaziou
6d7ed7c050
gnu: Add seahorse-adventures.
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* gnu/packages/games.scm (seahorse-adventures): New variable.
2020-06-21 23:14:16 +02:00
Julien Lepiller
3f3c61b8d5
gnu: Add font-mplus-testflight.
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* gnu/packages/fonts.scm (font-mplus-testflight): New variable.
2020-06-21 21:43:07 +02:00
Timotej Lazar
dbadca9ac7
gnu: k3b: Update to 20.04.2.
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* gnu/packages/kde-multimedia.scm (k3b): Update to 20.04.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21 17:36:41 +02:00
Timotej Lazar
c9650cef1e
gnu: k3b: Note the runtime dependency on udisks-service.
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* gnu/packages/kde-multimedia.scm (k3b)[description]: Note that udisks-service
should be enabled.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21 17:36:41 +02:00
Timotej Lazar
4aa89a0914
gnu: k3b: Add inputs for libraries loaded at runtime.
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Patch the source to load these from absolute paths. Actual loading is done by
the Qt library, so we cannot use k3b’s runpath.
* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add libcdio-paranoia and
libdvdcss.
[arguments]<#:phases>[set-absolute-library-paths]: New phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21 17:36:41 +02:00
Timotej Lazar
7afaab8bef
gnu: k3b: Add inputs for external programs.
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* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add cdrdao, dvd+rw-tools,
libburn and sox.
[arguments]<#:phases>[wrap-path]: New phase to wrap the binary with paths to
the above.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21 17:36:40 +02:00
Timotej Lazar
f458958543
gnu: Add cdrdao.
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* gnu/packages/cdrom.scm (cdrdao): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-21 17:36:40 +02:00
Ludovic Courtès
e4a4287c5f
channels: 'authenticate-channel' doesn't check relation with intro commit.
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Fixes <https://bugs.gnu.org/41908 >.
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.
The relation check imposed an extra restriction that was unnecessary:
it's enough to authenticate the set difference between the closure of
START-COMMIT and that of END-COMMIT. Any attempt to jump to an
unrelated commit would lead to the authentication failure of one commit
on the way.
* guix/channels.scm (authenticate-channel): Remove extra
'commit-relation' check when (null? commits).
2020-06-21 17:36:40 +02:00
Ludovic Courtès
41939c374a
git-authenticate: Ignore authenticated commit cache when it's not #o600.
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* guix/git-authenticate.scm (previously-authenticated-commits): Stat
PORT; return the empty list if it's no #o600 and change it to #o600.
2020-06-21 17:36:39 +02:00
Leo Prikler
bdafdfcec9
gnu: add convmv.
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* gnu/packages/convmv.scm: New file.
* gnu/local.mk: Add it to build.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-06-21 15:53:06 +02:00
Julien Lepiller
5dca64fc97
gnu: Add font-fontna-yasashisa-antique.
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gnu/packages/fonts.scm (font-fontna-yasashisa-antique): New variable.
2020-06-21 15:50:16 +02:00
Jan (janneke) Nieuwenhuizen
b7249aa472
services: childhurd: Support more than one instance.
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* gnu/services/virtualization.scm (<hurd-vm-configuration>)[options]: Remove
"--hda" option.
[id,net-options]: New fields.
(hurd-vm-net-options): New procedure. Parameterize port forwarding with ID.
* gnu/services/virtualization.scm (hurd-vm-shepherd-service): Use them.
Parameterize provision with ID, if set. Hardcode "--hda" option for image.
* doc/guix.texi (Virtualization Services): Document new fields. Update for
hardcoding of "--hda".
2020-06-21 12:51:36 +02:00
B. Wilson
512d23c65d
gnu: Add poke.
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* gnu/packages/engineering.scm (poke): New variable.
* gnu/packages/bison.scm (bison-3.6): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-06-21 11:06:53 +02:00
Kyle Meyer
292b26d4e5
gnu: git-annex: Update to 8.20200617.
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* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20200617.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-21 10:33:32 +03:00
Vinicius Monego
11fab4a85a
gnu: emacs-hy-mode: Update to 1.0.4.
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* gnu/packages/emacs-xyz.scm (emacs-hy-mode): Update to 1.0.4.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-06-21 11:42:14 +08:00
Brice Waegeneire
f6c6970e0d
system: Add 'sg' and 'newgrp' to %SETUID-PROGRAMS.
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* gnu/system.scm (%setuid-programs): Add 'sg' and 'newgrp'.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2020-06-21 11:35:55 +08:00
Nicolas Goaziou
027285691a
gnu: xmoto: Unbundle ODE and libccd.
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* gnu/packages/games.scm (xmoto): Unbundle ODE and libccd.
[inputs]: Add ode.
2020-06-21 01:47:05 +02:00
Nicolas Goaziou
fb5296605e
gnu: xmoto: Update to 0.6.0-0-f7ca787.
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* gnu/packages/games.scm (xmoto): Update to 0.6.0-0-f7ca787.
[source]: Remove patches.
[arguments]: Remove make-flags keyword.
* gnu/packages/patches/xmoto-remove-glext.patch:
* gnu/packages/patches/xmoto-reproducible.patch:
* gnu/packages/patches/xmoto-utf8.patch: Delete files.
* gnu/local.mk: Register previous deletions.
2020-06-21 00:45:08 +02:00
Nicolas Goaziou
a70e2f0f07
gnu: emacs-hyperbole: Use inputs instead of propagated inputs.
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* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Replace domainname
with dnsdomainname, not hostname.
[propagated-inputs]: move to...
[inputs]: ...this.
2020-06-21 00:13:38 +02:00
Pierre Langlois
377a5f65ed
gnu: emacs-magit: Update to 0746bf1b.
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* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 0746bf1b.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-06-21 00:02:15 +02:00
Nicolas Goaziou
915d898f15
gnu: emacs-hyperbole: Update to 7.0.6.
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* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Update to 7.0.6.
[source]: Use GNU ELPA URL. Remove some patches.
[arguments]: Add phase.
* gnu/packages/patches/emacs-hyperbole-do-not-check-dir.patch: Delete file.
* gnu/packages/patches/emacs-hyperbole-domainname.patch: Delete file.
* gnu/local.mk: Register sole patch.
2020-06-20 23:41:45 +02:00
Ludovic Courtès
9015ed6688
gnu: gnutls: Pass #:tests? unconditionally.
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* gnu/packages/tls.scm (gnutls)[arguments]: Add #:tests? unconditionally.
2020-06-20 23:36:02 +02:00
Ludovic Courtès
9ee8b41f2b
gnu: gnutls: Leave #:disallowed-references empty for GNU/Hurd.
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Partly fixes <https://bugs.gnu.org/41775 >.
This is a followup to a9bcc64746
2020-06-20 23:36:01 +02:00
