guix/gnu/packages
Ricardo Wurmus d41f678420
gnu: r-limma: Update to 3.34.4.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4.
2017-12-19 20:35:03 +01:00
..
aux-files linux-libre: Adapt some arm options to match intel conf. 2017-11-23 20:06:58 +01:00
bootstrap
patches gnu: qemu: Update to 2.10.2. 2017-12-19 01:15:09 +01:00
abduco.scm
abiword.scm
accessibility.scm Update email address for ng0. 2017-11-19 12:13:43 +02:00
acct.scm
acl.scm
admin.scm gnu: acpica: Use HTTPS for home page. 2017-12-06 15:02:23 +01:00
adns.scm
aidc.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
algebra.scm gnu: eigen: Update to 3.3.4. 2017-12-15 07:32:36 -06:00
android.scm gnu: Move testing packages from python.scm to check.scm. 2017-11-17 22:36:26 +01:00
animation.scm
anthy.scm
apl.scm
apr.scm
aspell.scm gnu: aspell-dict-en: Update to 2017.08.24-0. 2017-12-09 23:18:32 +02:00
assembly.scm
astronomy.scm
attr.scm
audio.scm gnu: Add noise-repellent. 2017-12-18 12:01:33 +01:00
augeas.scm
autogen.scm
autotools.scm Update email address for ng0. 2017-11-19 12:13:43 +02:00
avahi.scm
avr.scm
axoloti.scm gnu: axoloti-runtime: Update ChibiOS URL. 2017-12-16 09:01:57 +01:00
backup.scm gnu: borg: Fix a data loss bug. 2017-12-16 16:33:32 -05:00
base.scm
bash.scm
bdw-gc.scm
benchmark.scm
bioinformatics.scm gnu: r-limma: Update to 3.34.4. 2017-12-19 20:35:03 +01:00
bison.scm
bittorrent.scm gnu: libtorrent-rasterbar: Update to 1.1.5. 2017-11-29 14:38:47 -05:00
boost.scm
bootloaders.scm gnu: u-boot: Update to 2017.11. 2017-12-03 08:47:28 +02:00
bootstrap.scm
build-tools.scm gnu: meson: Update to 0.44.0. 2017-12-12 20:30:19 +01:00
busybox.scm
c.scm
calcurse.scm
calendar.scm gnu: Move date/time packages from python.scm to time.scm. 2017-11-18 12:45:19 +01:00
ccache.scm
cdrom.scm gnu: libcue: Update to 2.2.0. 2017-12-07 05:16:16 +01:00
certs.scm gnu: nss-certs: Update to 3.34.1. 2017-12-02 02:00:07 +01:00
check.scm gnu: Move date/time packages from python.scm to time.scm. 2017-11-18 12:45:19 +01:00
chez.scm gnu: chez-scheme: Update to 9.5. 2017-12-09 14:13:16 +01:00
ci.scm
cinnamon.scm
cmake.scm
cobol.scm
code.scm gnu: global: Update to 6.6.1 [fixes CVE-2017-17531]. 2017-12-17 08:51:26 +02:00
commencement.scm gnu: commencement: Do not graft early bootstrap packages. 2017-12-05 11:50:00 +01:00
compression.scm gnu: perl-compress-raw-zlib: Update to 2.076. 2017-12-16 02:57:46 +01:00
compton.scm
conkeror.scm
conky.scm
connman.scm gnu: cmst: Update to 2017.09.19. 2017-12-07 06:02:56 +01:00
cook.scm
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: Add r-ggjoy. 2017-12-18 12:01:34 +01:00
cross-base.scm
crypto.scm gnu: libsodium: Update to 1.0.16. 2017-12-18 23:25:20 +01:00
cryptsetup.scm
cups.scm gnu: hplip: Update to 3.7.11. 2017-12-15 23:32:02 +01:00
curl.scm gnu: curl: Update to 7.57.0 [fixes CVE-2017-{8816,8817,8818}]. 2017-11-29 14:38:51 -05:00
cyrus-sasl.scm gnu: cyrus-sasl: Use new home page. 2017-11-11 05:17:58 +01:00
databases.scm gnu: perl-sql-abstract: Update source uri. 2017-12-10 11:35:28 +02:00
datamash.scm
datastructures.scm gnu: Add uthash. 2017-12-12 05:12:13 +01:00
dav.scm gnu: Move testing packages from python.scm to check.scm. 2017-11-17 22:36:26 +01:00
dc.scm
debug.scm
dejagnu.scm
dico.scm
dictionaries.scm gnu: grammalecte: Fix 'license' field. 2017-12-17 21:38:03 +01:00
direct-connect.scm gnu: linuxdcpp: Use scons-build-system. 2017-11-30 18:19:31 +05:30
disk.scm
display-managers.scm gnu: sddm: Remove obsolete workaround. 2017-12-07 17:36:17 +01:00
django.scm gnu: django: Fix building python-django-allauth. 2017-11-24 22:16:33 +00:00
djvu.scm
dns.scm gnu: knot: Update to 2.6.3. 2017-11-24 19:05:01 +01:00
docbook.scm
docker.scm gnu: Move web packages from python to python-web. 2017-11-13 23:41:01 +01:00
documentation.scm
dunst.scm
dvtm.scm
ebook.scm gnu: Move date/time packages from python.scm to time.scm. 2017-11-18 12:45:19 +01:00
ed.scm
education.scm
electronics.scm
elf.scm
elixir.scm gnu: elixir: Update to 1.5.2 and disable failing tests. 2017-12-04 10:36:48 +01:00
emacs.scm gnu: emacspeak: Update to 47.0. 2017-12-18 16:50:45 -05:00
embedded.scm gnu: picprog: Fix non-Intel support. 2017-12-10 12:38:48 +02:00
enchant.scm
engineering.scm gnu: kicad: Install libraries to PREFIX/lib, not PREFIX/lib64. 2017-12-06 20:22:09 +01:00
enlightenment.scm gnu: enlightenment: Update to 0.22.1. 2017-11-25 20:08:34 +02:00
entr.scm
erlang.scm gnu: Erlang: Update to 20.1.7 [fixes CVE-2017-1000385]. 2017-12-13 19:51:00 -05:00
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm gnu: glusterfs: Replace hardcoded FHS references. 2017-12-01 16:41:23 +01:00
file.scm
finance.scm gnu: monero-core: Fix missing dependency. 2017-11-30 18:14:57 +01:00
firmware.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: add font-fira-sans. 2017-11-28 14:26:20 -05:00
fontutils.scm gnu: t1lib: Change how patched CVEs are listed. 2017-12-10 21:59:08 +02:00
forth.scm
fpga.scm
freedesktop.scm Revert "gnu: libinput: Update to 1.9.3." 2017-12-11 11:40:52 +02:00
freeipmi.scm
fribidi.scm
ftp.scm
fvwm.scm gnu: fvwm: Update to 2.6.7. 2017-12-09 16:00:48 +08:00
game-development.scm gnu: deutex: Update to 5.1.0. 2017-12-18 17:19:58 -05:00
games.scm gnu: Add quakespasm. 2017-12-19 10:21:14 -05:00
gawk.scm
gcal.scm
gcc.scm gnu: gcc@6: Respect SOURCE_DATE_EPOCH in __DATE__ and __TIME__ macros. 2017-11-20 00:17:39 +01:00
gd.scm
gdb.scm
geo.scm
gettext.scm
ghostscript.scm gnu: ghostscript-with-cups: Turn into a public variable. 2017-12-05 17:49:48 +01:00
gimp.scm
gkrellm.scm
gl.scm gnu: Add virtualgl. 2017-12-08 15:03:46 +01:00
glib.scm gnu: Move test packages from perl to perl-check. 2017-11-13 23:03:01 +01:00
gnome.scm gnu: gucharmap: Use glib-or-gtk-build-system. 2017-12-14 11:09:26 +01:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm gnu: gnucash: Use HTTPS for www.gnucash.org. 2017-11-15 03:19:19 +01:00
gnunet.scm gnu: gnurl: Use new download URL. 2017-12-09 16:17:34 -05:00
gnupg.scm gnu: GnuPG pinentry: Update to 1.1.0. 2017-12-18 23:25:20 -05:00
gnustep.scm gnu: windowmaker: Add '.desktop' file. 2017-12-06 16:31:09 -05:00
gnuzilla.scm gnu: icecat: Fix CVE-2017-7843. 2017-12-09 03:55:47 -05:00
gobby.scm
golang.scm
gperf.scm
gprolog.scm
gps.scm gnu: Add gama. 2017-11-27 22:18:27 +02:00
graph.scm gnu: Add r-diffusionmap. 2017-12-18 12:01:35 +01:00
graphics.scm gnu: rapicorn: Update home page. 2017-11-27 14:12:24 +01:00
graphviz.scm gnu: Add python-pydot. 2017-11-07 21:03:15 +01:00
groff.scm gnu: Add groff-minimal. 2017-12-02 15:06:02 +01:00
gsasl.scm
gstreamer.scm gnu: Remove ffmpeg@3.3. 2017-12-12 01:08:06 +01:00
gtk.scm gnu: gtksourceview: Update to 3.24.6. 2017-12-13 13:15:47 +01:00
guile-wm.scm gnu: guile-wm: Fix up indentation. 2017-12-07 11:23:27 -05:00
guile.scm gnu: guile-gdbm-ffi: Default to Guile 2.2. 2017-12-15 23:32:02 +01:00
gv.scm
gxmessage.scm
ham-radio.scm
haskell-check.scm gnu: ghc-quickcheck-io: Update to 0.2.0. 2017-12-07 02:59:27 +01:00
haskell-crypto.scm gnu: ghc-asn1-types: Update to 0.3.2. 2017-12-01 16:08:58 +01:00
haskell-web.scm gnu: ghc-http-conduit: Update to 2.2.4. 2017-12-06 15:02:23 +01:00
haskell.scm gnu: ghc-reflection: Update to 2.1.2. 2017-12-15 16:44:25 +01:00
hexedit.scm
hugs.scm
hurd.scm
ibus.scm gnu: ibus: Update to 1.5.17. 2017-11-13 10:19:26 +02:00
icu4c.scm
idris.scm gnu: Move web packages from haskell to haskell-web. 2017-11-13 18:12:37 +01:00
idutils.scm
image-processing.scm
image-viewers.scm gnu: Move test packages from perl to perl-check. 2017-11-13 23:03:01 +01:00
image.scm gnu: libjpeg-turbo: Update to 1.5.3. 2017-12-18 23:25:20 +01:00
imagemagick.scm gnu: graphicsmagick: Update to 1.3.27. 2017-12-10 19:15:44 +01:00
indent.scm
inklingreader.scm
inkscape.scm
irc.scm gnu: weechat: Update to 2.0. 2017-12-03 15:39:00 +01:00
iso-codes.scm
java.scm gnu: icedtea@2: Update to 2.6.12 [security fixes]. 2017-12-06 19:41:29 -05:00
javascript.scm gnu: Add mujs. 2017-11-12 19:39:20 +02:00
jemalloc.scm gnu: jemalloc: Fix tests for aarch64. 2017-12-10 16:04:16 -06:00
jrnl.scm gnu: Move date/time packages from python.scm to time.scm. 2017-11-18 12:45:19 +01:00
julia.scm
kde-frameworks.scm
kde.scm gnu: krita: Enhance krita. 2017-12-16 16:50:31 -05:00
kerberos.scm
key-mon.scm
kodi.scm gnu: kodi: Update snapshot. 2017-11-20 00:17:39 +01:00
language.scm gnu: perl-lingua-stem-ru: Update to 0.04. 2017-12-16 02:57:47 +01:00
ld-wrapper.in
ldc.scm gnu: Move testing packages from python.scm to check.scm. 2017-11-17 22:36:26 +01:00
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm gnu: python-pycanberra: Switch to new download URL. 2017-11-26 18:21:19 -05:00
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm gnu: Move testing packages from python.scm to check.scm. 2017-11-17 22:36:26 +01:00
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: libreoffice: Remove GTK+ 2. 2017-11-18 12:30:18 -05:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libupnp.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
libusb.scm gnu: libusb-compat: Use the same home page as libusb. 2017-11-12 03:25:49 +01:00
lighting.scm
linux.scm gnu: linux-libre: Update to 4.14.7. 2017-12-18 19:52:02 -05:00
lirc.scm
lisp.scm gnu: gcl: Update snapshot. 2017-11-24 14:50:04 -05:00
llvm.scm
logging.scm gnu: Move web packages from python to python-web. 2017-11-13 23:41:01 +01:00
lolcode.scm
lout.scm
lsof.scm
lua.scm gnu: lua5.1-socket: Add missing file-name field. 2017-12-06 10:50:17 +02:00
lxde.scm gnu: pcmanfm: Fix CVE-2017-8934. 2017-11-23 22:55:58 +01:00
lxqt.scm
m4.scm
machine-learning.scm gnu: python-scikit-learn: Patch test non-determinism. 2017-12-14 22:50:19 +10:00
mail.scm gnu: claws-mail: Update to 3.16.0. 2017-12-18 15:22:08 +01:00
make-bootstrap.scm
man.scm gnu: man-db: Use 'groff-minimal' at run time. 2017-12-02 15:06:02 +01:00
markup.scm gnu: perl-markdown-discount: Use a shorter patch file name. 2017-11-28 14:57:16 +01:00
marst.scm
mate.scm
maths.scm gnu: wxmaxima: Update to 17.10.1. 2017-12-19 11:26:16 -05:00
mc.scm Update email address for ng0. 2017-11-19 12:13:43 +02:00
mcrypt.scm
medical.scm gnu: Move database packages from python.scm to databases.scm. 2017-11-17 22:36:27 +01:00
mes.scm gnu: mescc-tools: Update to 0.3. 2017-12-03 08:47:28 +02:00
messaging.scm gnu: gajim: Update to 0.16.9. 2017-12-19 13:17:17 +01:00
microcom.scm
mingw.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm gnu: taglib: Update to 1.11.1 and fix home page. 2017-11-21 22:18:44 +01:00
mpd.scm gnu: mpd: Update to 0.20.13. 2017-12-19 02:28:06 -05:00
mpi.scm gnu: psm: Only use as an input on supported-systems. 2017-11-07 20:41:08 +02:00
mtools.scm
multiprecision.scm
music.scm gnu: qmidiarp: Update to 0.6.5. 2017-12-18 12:01:33 +01:00
musl.scm gnu: musl: Update to 1.1.18. 2017-11-20 18:59:54 -05:00
nano.scm gnu: nano: Update to 2.9.1. 2017-11-28 09:38:24 +02:00
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: perl-net-dns: Update to 1.14. 2017-12-16 02:57:47 +01:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm gnu: node: Update to 8.9.1. 2017-11-28 10:04:26 +01:00
noweb.scm
ntp.scm gnu: openntpd: Enable use of TLS-based time constraints. 2017-11-27 13:29:18 -05:00
nutrition.scm gnu: gourmet: Fix runtime failure and enhance plugin. 2017-12-17 17:22:31 +01:00
nvi.scm gnu: nvi: Build with support for Unicode text. 2017-11-11 12:00:37 -05:00
ocaml.scm gnu: coq-interval: Fix source URL for 3.3.0. 2017-11-24 18:22:42 +01:00
ocr.scm
onc-rpc.scm
openbox.scm
openldap.scm
openstack.scm gnu: python-git-review: Update to 1.26.0. 2017-12-06 10:51:47 +01:00
orpheus.scm
ots.scm
package-management.scm gnu: Update gwl to 0.1.1. 2017-12-19 12:27:43 +01:00
parallel.scm gnu: parallel: Update to 20171122. 2017-11-24 09:31:49 -05:00
password-utils.scm gnu: keepassxc: Update to 2.2.4. 2017-12-19 01:18:24 -05:00
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm gnu: mupdf: Unbundle mujs. 2017-11-12 19:39:21 +02:00
pem.scm
perl-check.scm gnu: perl-test-yaml: Update to 1.06. 2017-12-16 02:57:48 +01:00
perl-web.scm
perl.scm gnu: Add perl-time-piece. 2017-12-14 00:05:15 +01:00
photo.scm gnu: Fix ambiguous 'zip' reference. 2017-12-18 17:52:58 +01:00
php.scm gnu: php: Update to 7.1.12. 2017-11-24 20:59:41 +01:00
pkg-config.scm
plotutils.scm
polkit.scm
popt.scm gnu: gflags: Update to 2.2.1. 2017-12-16 02:57:31 +01:00
pretty-print.scm
profiling.scm
protobuf.scm gnu: protobuf: Update to 3.5.0. 2017-12-04 08:13:55 +01:00
pth.scm
pulseaudio.scm
pumpio.scm
pv.scm
python-crypto.scm gnu: Move date/time packages from python.scm to time.scm. 2017-11-18 12:45:19 +01:00
python-web.scm gnu: Move date/time packages from python.scm to time.scm. 2017-11-18 12:45:19 +01:00
python.scm gnu: python-dulwich: Update to 0.18.6 [fixes CVE-2017-16228]. 2017-12-16 17:04:05 -05:00
qt.scm gnu: qtsensors: Disable parallel tests. 2017-11-25 22:16:34 +02:00
ragel.scm
rails.scm
ratpoison.scm
rdesktop.scm
rdf.scm gnu: Move date/time packages from python.scm to time.scm. 2017-11-18 12:45:19 +01:00
re2c.scm
readline.scm
regex.scm gnu: re2: Update to 2017-12-01. 2017-12-07 17:36:16 +01:00
rrdtool.scm
rsync.scm gnu: rsync: Patch CVE-2017-{16548,17433,17434}. 2017-12-18 22:53:46 +02:00
ruby.scm gnu: ruby: Replace with ruby-2.4.3 [fixes CVE-2017-17405]. 2017-12-15 13:56:51 +10:00
rush.scm
rust.scm gnu: cargo: Add file-name field to input sources. 2017-12-11 21:21:46 +02:00
samba.scm gnu: samba: Update to 4.7.3 [fixes CVE-2017-14746 and CVE-2017-15275]. 2017-11-21 22:08:02 +01:00
sawfish.scm
scanner.scm
scheme.scm
screen.scm
scribus.scm gnu: scribus: Fix No module named _sysconfigdata_nd. 2017-11-20 18:14:47 +01:00
scsi.scm
sdcc.scm
sdl.scm
search.scm gnu: xapian: Update to 1.4.5. 2017-12-10 15:56:44 +01:00
security-token.scm gnu: pcsc-lite: Update to 1.8.23. 2017-12-19 13:16:42 +01:00
selinux.scm
serialization.scm
serveez.scm
shells.scm gnu: s-shell: Update to commit da2e5c20c0c5f477ec3426dc2584889a789b1659. 2017-12-14 18:26:25 +01:00
shellutils.scm
simh.scm
simulation.scm gnu: openfoam: Clean up to reduce closure. 2017-12-01 11:28:48 +01:00
skarnet.scm gnu: skalibs: Fix non-reproducibility issue. 2017-12-11 17:14:36 +01:00
skribilo.scm
slang.scm
smalltalk.scm
sml.scm gnu: polyml: Update to 5.7.1. 2017-12-13 14:18:51 +01:00
speech.scm
spice.scm gnu: spice: Update to 0.14.0. 2017-12-04 14:05:23 -05:00
ssh.scm
sssd.scm
stalonetray.scm
statistics.scm gnu: Update r-cowplot to 0.9.2. 2017-12-19 10:47:19 +01:00
storage.scm gnu: Move testing packages from python.scm to check.scm. 2017-11-17 22:36:26 +01:00
suckless.scm Update email address for ng0. 2017-11-19 12:13:43 +02:00
swig.scm
sync.scm gnu: owncloud-client: Update to 2.3.4. 2017-11-18 21:50:11 +02:00
syncthing.scm gnu: syncthing: Update to 0.14.41. 2017-12-06 12:54:06 -05:00
syndication.scm
synergy.scm gnu: synergy: Fix install test/install error. 2017-11-28 18:26:20 -05:00
task-management.scm
tbb.scm
tcl.scm gnu: expect: Update to 5.45.3. 2017-12-18 23:25:20 +01:00
telephony.scm gnu: Add ortp. 2017-12-04 20:54:37 +01:00
terminals.scm gnu: termite: Update to 13. 2017-12-19 01:37:22 +01:00
tex.scm gnu: texlive-bin: Disable tests on aarch64. 2017-12-15 07:32:44 -06:00
texinfo.scm
text-editors.scm gnu: text-editors: Fix nckx's copyright statement. 2017-12-15 16:44:26 +01:00
textutils.scm gnu: antiword: Fix broken embedded directory name. 2017-12-19 13:16:36 +01:00
time.scm gnu: python-pytz, python-pytzdata: Update to 2017.3.x. 2017-11-24 19:05:01 +01:00
tls.scm gnu: openssl: Update replacement to 1.0.2n [fixes CVE-2017-{3737,3738}]. 2017-12-17 21:10:45 -05:00
tmux.scm
tor.scm gnu: tor: Update to 3.1.9 [security fixes]. 2017-12-01 16:45:19 +01:00
tryton.scm gnu: Move date/time packages from python.scm to time.scm. 2017-11-18 12:45:19 +01:00
tv.scm
uml.scm
unrtf.scm
upnp.scm gnu: miniupnpc: Update to 2.0.20171212. 2017-12-12 20:28:08 +01:00
uucp.scm
valgrind.scm
version-control.scm gnu: cgit: Patch absolute file names. 2017-12-13 05:15:21 +03:00
video.scm gnu: Add libvdpau-va-gl. 2017-12-16 18:58:50 +02:00
vim.scm gnu: Add vim-fugitive. 2017-11-27 22:26:17 +02:00
virtualization.scm gnu: qemu: Update to 2.10.2. 2017-12-19 01:15:09 +01:00
vpn.scm gnu: openconnect: Use only vpnc-scripts. 2017-11-29 16:08:36 +01:00
w3m.scm gnu: w3m: Find an editor in the environment. 2017-11-11 23:04:39 -05:00
wdiff.scm
web-browsers.scm gnu: Move web packages from python to python-web. 2017-11-13 23:41:01 +01:00
web.scm gnu: Add mod-wsgi. 2017-12-17 20:46:46 +00:00
webkit.scm gnu: webkitgtk: Update to 2.18.3 [fixes CVE-2017-{13788,13798,13803}]. 2017-11-10 12:48:15 -05:00
wget.scm gnu: wget2: Switch to official URL. 2017-11-20 18:43:10 +01:00
wicd.scm
wine.scm gnu: wine64: Install libraries to /lib. 2017-12-08 21:43:14 +01:00
wm.scm gnu: Add i3lock-fancy. 2017-12-11 17:14:35 +01:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: xf86-input-wacom: Update to 0.35.0. 2017-12-08 09:31:27 +02:00
xfce.scm gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache generation. 2017-12-19 18:11:56 +01:00
xfig.scm gnu: xfig: Update to 3.2.6a. 2017-12-12 22:34:29 +01:00
xiph.scm
xml.scm gnu: Move test packages from perl to perl-check. 2017-11-13 23:03:01 +01:00
xnee.scm
xorg.scm gnu: xpra: Update to 2.2. 2017-12-14 18:26:25 +01:00
zile.scm