guix/gnu/packages
Efraim Flashner 61bce4d143
gnu: python-mappy: Move to (gnu packages bioinformatics).
* gnu/packages/python-xyz.scm (python-mappy): Move to ...
* gnu/packages/bioinformatics.scm: ... here.
2021-06-08 09:50:55 +03:00
..
aux-files gnu: linux-libre: Update to 5.12.5. 2021-05-21 11:40:12 -04:00
patches gnu: xpra: Update to 4.2. 2021-06-07 09:33:57 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: nnn: Remove marketing hyperbole. 2021-06-05 18:29:55 +02:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: giac: Update to 1.7.0-11. 2021-06-05 17:24:13 +02:00
android.scm
animation.scm gnu: lightspark: Update to 0.8.4.1. 2021-05-27 18:20:35 +02:00
anthy.scm
antivirus.scm
apl.scm
apr.scm
arcan.scm
aspell.scm gnu: ispell: Update to 3.4.04. 2021-06-05 18:29:55 +02:00
assembly.scm
astronomy.scm gnu: gnuastro: Update to 0.15. 2021-05-31 09:44:47 +03:00
attr.scm
audio.scm gnu: faudio: Update to 21.06. 2021-06-05 18:29:56 +02:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm gnu: axoloti-runtime: Patch firmware Makefile. 2021-05-30 14:51:04 +02:00
backup.scm gnu: disarchive: Fix build when cross-compiling. 2021-05-17 23:27:40 -04:00
base.scm
bash.scm
batik.scm
bdw-gc.scm gnu: libgc: Add variant with '--disable-munmap'. 2021-05-13 00:19:58 +02:00
benchmark.scm gnu: intel-mpi-benchmarks: Remove top-level reference to 'openmpi'. 2021-05-28 11:36:02 +02:00
bioconductor.scm gnu: r-sushi: Update to 1.30.0. 2021-06-05 09:12:58 +02:00
bioinformatics.scm gnu: python-mappy: Move to (gnu packages bioinformatics). 2021-06-08 09:50:55 +03:00
bison.scm
bittorrent.scm
boost.scm gnu: boost: Migrate uri from bintray. 2021-05-11 12:49:53 +02:00
bootloaders.scm
bootstrap.scm
browser-extensions.scm
build-tools.scm gnu: gn: Build with Python 3. 2021-05-13 12:36:49 +02:00
busybox.scm
c.scm gnu: PackCC: Update to 1.5.0. 2021-05-18 22:23:48 +02:00
calcurse.scm
calendar.scm
ccache.scm gnu: ccache: Update to 4.3. 2021-05-13 00:32:20 +02:00
cdrom.scm
cedille.scm
certs.scm
check.scm gnu: Fix erroneous uses of 'package/inherit'. 2021-05-23 17:49:56 +02:00
chemistry.scm
chez.scm
chicken.scm
chromium.scm gnu: ungoogled-chromium: Update to 91.0.4472.77-0.6802c88. 2021-06-01 20:21:54 +02:00
ci.scm gnu: ci: Use 'inputs' in build phases instead of '%build-inputs'. 2021-06-04 13:34:37 +02:00
cinnamon.scm
clojure.scm
cluster.scm gnu: Add libdqlite. 2021-06-05 23:39:29 +02:00
cmake.scm
cobol.scm
code.scm gnu: universal-ctags: Update to 5.9.20210509.0. 2021-05-18 22:23:48 +02:00
commencement.scm
compression.scm gnu: libjcat: Update to 0.1.8. 2021-05-29 16:09:49 +02:00
compton.scm
configuration-management.scm
conky.scm
connman.scm
convmv.scm
cook.scm
coq.scm
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: Add r-arrow. 2021-06-05 09:12:39 +02:00
crates-graphics.scm gnu: Remove rust-rav1e. 2021-06-06 02:38:28 -04:00
crates-gtk.scm
crates-io.scm gnu: Add rust-bitreader-0.3. 2021-06-06 02:38:27 -04:00
cross-base.scm
crypto.scm gnu: libolm: Update to 3.2.3. 2021-05-29 16:09:49 +02:00
cryptsetup.scm gnu: cryptsetup: Rewrite synopsis & description. 2021-05-30 15:13:40 +02:00
cups.scm gnu: hplip: Update to 3.21.4. 2021-05-13 16:50:49 +02:00
curl.scm gnu: curl: Update to 7.77.0 [fixes CVE-2021-{22897,22898,22901}]. 2021-06-02 23:13:16 -04:00
cvassistant.scm
cybersecurity.scm gnu: Add pwntools. 2021-06-06 23:12:17 +02:00
cyrus-sasl.scm
databases.scm gnu: redis: Update to 6.2.4 [security fixes]. 2021-06-02 00:54:39 -04:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm
dejagnu.scm
dhall.scm
dico.scm
dictionaries.scm gnu: ding: Use 'inputs' in build phases instead of '%build-inputs'. 2021-06-04 13:34:54 +02:00
diffoscope.scm gnu: diffoscope: Update to 177. 2021-06-06 02:38:28 -04:00
digest.scm
direct-connect.scm
disk.scm gnu: gparted: Update to 1.3.0. 2021-06-05 23:39:29 +02:00
display-managers.scm
distributed.scm
django.scm gnu: python-django@2.2: Update to 2.2.24 [fixes CVE-2021-33203, CVE-2021-33571]. 2021-06-02 17:05:55 +02:00
djvu.scm
dlang.scm gnu: Fix build for ldc. 2021-05-21 18:05:07 +02:00
dns.scm gnu: unbound: Enable DoH support. 2021-06-01 20:21:54 +02:00
docbook.scm gnu: dblatex: Use patched texlive-amsfonts. 2021-06-05 09:26:14 +02:00
docker.scm
documentation.scm gnu: asciidoc: Remove Python 2 variant. 2021-05-18 22:23:49 +02:00
drones.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm gnu: cozy: Update to 1.0.3. 2021-06-06 23:12:18 +02:00
ed.scm
education.scm gnu: Add kanatest. 2021-05-25 12:11:18 +02:00
efi.scm
electronics.scm
elf.scm
elixir.scm
elm.scm
emacs-xyz.scm gnu: emacs-company-irony: Update to 1.1.1. 2021-06-06 09:06:40 +02:00
emacs.scm gnu: emacs: Support console mice. 2021-05-29 16:09:48 +02:00
embedded.scm gnu: fc-host-tools: Make installation path patcher more self-maintaining. 2021-05-18 15:55:12 +02:00
emulators.scm gnu: ppsspp: Update to 1.11.3-1.69fa207. 2021-06-06 02:38:29 -04:00
enchant.scm
engineering.scm gnu: poke: Update to 1.3. 2021-06-06 10:53:55 +03:00
enlightenment.scm
entr.scm gnu: entr: Update to 4.9. 2021-05-27 14:41:04 -04:00
erlang.scm
esolangs.scm
fabric-management.scm gnu: ucx: Restore (and adapt) ioctl fallback patch. 2021-05-22 16:04:59 +02:00
fcitx.scm
fcitx5.scm
figlet.scm
file-systems.scm gnu: Add udftools. 2021-06-02 15:40:03 +02:00
file.scm
finance.scm gnu: homebank: Update to 5.5.2. 2021-06-06 23:12:18 +02:00
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm gnu: fltk: Update to 1.3.6. 2021-06-03 18:23:39 +02:00
fonts.scm gnu: Remove font-ubuntu. 2021-06-03 08:29:04 +02:00
fontutils.scm
forth.scm
fpga.scm gnu: nvc: Update to 1.5.1. 2021-05-23 21:56:21 +02:00
freedesktop.scm gnu: Add seatd. 2021-05-14 14:47:17 +02:00
freeipmi.scm gnu: freeipmi: Update to 1.6.8. 2021-05-23 22:39:14 +02:00
fribidi.scm
ftp.scm gnu: filezilla: Update to 3.54.1. 2021-05-23 21:56:20 +02:00
fvwm.scm
game-development.scm gnu: ois: Update to 1.5.1. 2021-05-23 21:56:20 +02:00
games.scm gnu: pioneer: Build with model files. 2021-06-02 21:38:32 +02:00
gawk.scm
gcal.scm
gcc.scm gnu: gcc-9: Update to 9.4.0. 2021-06-01 20:54:06 +03:00
gd.scm
gdb.scm
genealogy.scm
genimage.scm
geo.scm
gettext.scm
ghostscript.scm
gimp.scm
gkrellm.scm
gl.scm
glib.scm gnu: perl-net-dbus: Update to 1.2.0. 2021-05-19 22:40:13 +03:00
gnome-xyz.scm
gnome.scm gnu: gtg: Update to 0.5. 2021-06-07 10:38:54 +03:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm gnu: aqbanking: Update to 6.3.0. 2021-05-26 15:08:00 -04:00
gnunet.scm
gnupg.scm
gnustep.scm
gnuzilla.scm gnu: icedove-wayland: Refactor as a wrapper around icedove. 2021-06-06 11:26:20 +02:00
gobby.scm
golang.scm
gperf.scm
gpodder.scm
gps.scm
graph.scm gnu: Add python-graph-tool. 2021-05-15 19:18:46 +02:00
graphics.scm gnu: autotrace: Prepare for GLib 2.68 and later. 2021-05-22 17:14:17 +02:00
graphviz.scm gnu: Graphviz: Fix CVE-2020-18032. 2021-05-15 17:04:01 -04:00
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: perl-cairo: Update to 1.109. 2021-05-18 23:07:46 +03:00
guile-wm.scm
guile-xyz.scm gnu: Add guile-drmaa. 2021-05-29 23:14:25 +02:00
guile.scm gnu: Fix erroneous uses of 'package/inherit'. 2021-05-23 17:49:56 +02:00
gv.scm
gxmessage.scm
hardware.scm gnu: memtester: Update to 4.5.1. 2021-06-02 12:53:10 +02:00
haskell-apps.scm
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm
haskell.scm
heads.scm
hexedit.scm
hugs.scm
hunspell.scm
hurd.scm gnu: Remove unneeded import. 2021-05-17 23:59:58 +02:00
hyperledger.scm
i2p.scm gnu: i2pd: Allow skipping tests. 2021-05-25 09:07:53 +03:00
ibus.scm
icu4c.scm gnu: icu4c: Add 69.1. 2021-06-01 20:21:54 +02:00
idris.scm
idutils.scm
image-processing.scm gnu: vtk: Wrap python modules. 2021-06-01 10:19:48 +01:00
image-viewers.scm
image.scm gnu: libheif: Update to 1.12.0. 2021-06-06 23:12:18 +02:00
imagemagick.scm
inklingreader.scm
inkscape.scm
installers.scm gnu: nsis: Respect SOURCE-DATE-EPOCH for reproducibility 2021-06-05 11:21:11 -04:00
ipfs.scm
irc.scm gnu: srain: Update to 1.2.2. 2021-06-07 10:38:54 +03:00
iso-codes.scm
jami.scm gnu: jami: Update to 20210606.1.e2f9490. 2021-06-08 00:04:07 -04:00
java-compression.scm
java-graphics.scm
java-maths.scm
java.scm
javascript.scm
jemalloc.scm
jose.scm gnu: jose: Update to 11. 2021-05-18 16:37:22 +02:00
jrnl.scm
julia-jll.scm gnu: Add julia-qt5base-jll. 2021-05-30 12:55:57 +03:00
julia-xyz.scm gnu: Add julia-prettytables. 2021-05-31 12:54:49 +03:00
julia.scm
jupyter.scm
kawa.scm
kde-frameworks.scm
kde-internet.scm
kde-multimedia.scm
kde-pim.scm
kde-plasma.scm
kde-systemtools.scm
kde-utils.scm
kde.scm gnu: qca: Update to 2.3.3. 2021-06-05 18:29:55 +02:00
kerberos.scm
key-mon.scm
kodi.scm
language.scm
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: libetonyek: Update to 0.1.10. 2021-05-23 22:39:15 +02:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linphone.scm
linux.scm gnu: linux-libre 4.4: Update to 4.4.271. 2021-06-03 22:41:01 -04:00
lirc.scm
lisp-xyz.scm gnu: sbcl-fof: Update to 0.2.0. 2021-06-07 14:00:18 +02:00
lisp.scm gnu: sbcl: Update to 2.1.5. 2021-06-01 12:01:24 +02:00
llvm.scm gnu: llvm-7: Update to 7.1.0. 2021-06-01 22:50:47 +03:00
logging.scm
logo.scm
loko.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm gnu: Update lxqt home-page for all lxqt packages. 2021-05-29 20:16:51 +02:00
m4.scm
machine-learning.scm
magic-wormhole.scm
mail.scm gnu: isync: Update to 1.4.2. 2021-06-07 21:52:31 +02:00
make-bootstrap.scm
man.scm
markup.scm gnu: md4c: Update to 0.4.8. 2021-05-23 22:39:15 +02:00
marst.scm
mastodon.scm
mate.scm
maths.scm gnu: Add frama-c. 2021-06-02 03:10:12 +02:00
matrix.scm
maven-parent-pom.scm
maven.scm
mc.scm gnu: mc: Order inputs alphabetically. 2021-05-29 16:09:48 +02:00
mcrypt.scm
medical.scm
mercury.scm
mes.scm gnu: nyacc: Update to 1.04.0. 2021-05-29 07:23:04 +02:00
messaging.scm gnu: dino: Update to 0.2.1 [fixes CVE-2021-33896]. 2021-06-07 16:51:38 -04:00
microcom.scm
mingw.scm
moe.scm
monitoring.scm gnu: hostscope: Add 'release-monitoring-url' property. 2021-05-28 23:04:44 +02:00
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: mpd: Update to 0.22.8. 2021-05-27 18:20:34 +02:00
mpi.scm
mtools.scm gnu: mtools: Update to 4.0.29. 2021-06-03 18:23:38 +02:00
multiprecision.scm
music.scm gnu: rosegarden: Update to 21.06. 2021-06-05 16:08:34 +02:00
musl.scm
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: opendht: Update to 2.2.0rc7-1.c8a0b44. 2021-06-08 00:02:13 -04:00
nfs.scm
nickle.scm
nicotine.scm
nim.scm
ninja.scm
node-xyz.scm
node.scm
noweb.scm
nss.scm
ntp.scm gnu: ntp: Prepare for GCC 10. 2021-05-22 16:04:58 +02:00
nutrition.scm
nvi.scm
ocaml.scm gnu: Add ocaml-ppx-cold. 2021-06-06 17:17:22 +02:00
ocr.scm
onc-rpc.scm gnu: rpcbind: Update to 1.2.6. 2021-05-13 01:15:10 +02:00
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm
openpgp.scm
openstack.scm
orange.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix-build-coordinator: Update to 0-31.4a47417. 2021-06-07 10:35:42 +01:00
pantheon.scm
parallel.scm gnu: xjobs: Add 'release-monitoring-url' property. 2021-05-28 23:04:44 +02:00
pascal.scm
password-utils.scm
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm gnu: img2pdf: Update to 0.4.1. 2021-05-09 21:53:12 +02:00
pem.scm
pep.scm gnu: java-pep-adapter 2.1.23. 2021-05-31 10:45:54 +02:00
perl-check.scm
perl-compression.scm gnu: perl-archive-extract: Update to 0.88. 2021-05-18 23:07:08 +03:00
perl-maths.scm
perl-web.scm gnu: perl-mojolicious: Update to 9.17. 2021-05-19 22:49:33 +03:00
perl.scm gnu: Add perl-bsd-resource. 2021-05-27 11:24:44 +02:00
perl6.scm
phabricator.scm
photo.scm gnu: ExifTool: Fix CVE-2021-22204 2021-05-09 10:42:18 -04:00
php.scm gnu: php: Update to 7.4.20. 2021-06-03 18:23:39 +02:00
piet.scm
pkg-config.scm
plotutils.scm gnu: asymptote: Use patched texlive-amsfonts. 2021-06-05 09:26:14 +02:00
poedit.scm
polkit.scm
popt.scm
presentation.scm
pretty-print.scm
printers.scm
profiling.scm
prolog.scm
protobuf.scm gnu: Fix erroneous uses of 'package/inherit'. 2021-05-23 17:49:56 +02:00
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
python-build.scm
python-check.scm gnu: Add python-pytest-mp. 2021-06-06 17:50:33 +02:00
python-compression.scm
python-crypto.scm
python-science.scm gnu: python-vedo: Make pkg-config a native input. 2021-06-02 10:27:59 +01:00
python-web.scm gnu: Add python-google. 2021-05-31 09:21:45 +02:00
python-xyz.scm gnu: python-mappy: Move to (gnu packages bioinformatics). 2021-06-08 09:50:55 +03:00
python.scm gnu: net-snmp: Omit static library. 2021-05-30 11:53:00 +02:00
qt.scm gnu: qtwebengine: Enable H.264 WebRTC encoding. 2021-06-07 16:51:35 -04:00
racket.scm gnu: Break up import loop between (gnu packages racket) and (gnu packages chez). 2021-05-29 22:12:48 +02:00
radio.scm gnu: sdrangel: Add SoapySDR support. 2021-06-06 09:46:04 +02:00
ragel.scm
rails.scm
raspberry-pi.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm
re2c.scm gnu: re2c: Update to 2.1.1. 2021-05-15 23:17:33 +03:00
readline.scm gnu: rlwrap: Fix single-quotation in Texinfo. 2021-05-30 11:52:59 +02:00
rednotebook.scm
regex.scm
robotics.scm
rpc.scm
rrdtool.scm
rsync.scm gnu: Add rsync 3.2.3. 2021-05-25 16:32:52 -04:00
ruby.scm gnu: Add ruby-yaml-lint. 2021-05-11 13:51:40 +03:00
rush.scm
rust-apps.scm gnu: rust-cargo-c: Update to 0.8.1+cargo-0.53. 2021-06-06 02:38:27 -04:00
rust.scm gnu: Add Rust 1.52.1. 2021-05-19 18:32:02 +02:00
sagemath.scm
samba.scm
sawfish.scm
scanner.scm
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdl.scm gnu: guile-sdl2: Update to 0.6.0. 2021-05-15 10:14:48 +02:00
search.scm
security-token.scm gnu: Add nitrocli. 2021-06-05 22:17:50 +02:00
selinux.scm
sequoia.scm gnu: pep-engine: Update to 2.1.34. 2021-05-31 10:45:53 +02:00
serialization.scm gnu: cereal: Update to 1.3.0. 2021-06-07 16:50:33 +02:00
serveez.scm
shells.scm gnu: dash: Update to 0.5.11.4. 2021-06-06 20:51:21 +02:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm gnu: smalltalk: Find glibc even when cross-compiling. 2021-06-04 13:40:02 +02:00
sml.scm
speech.scm
sphinx.scm gnu: python-sphinx-gallery: Update to 0.9.0. 2021-06-02 10:22:01 +03:00
spice.scm Merge branch 'version-1.3.0' 2021-05-11 22:42:59 -04:00
sqlite.scm
squirrel.scm
ssh.scm
sssd.scm
stalonetray.scm
statistics.scm gnu: r-with-tests: Use patched texlive-amsfonts. 2021-06-03 11:18:03 +02:00
stb.scm
stenography.scm
storage.scm
suckless.scm gnu: surf: Update to 2.1. 2021-05-24 01:28:19 +02:00
swig.scm
sync.scm
syncthing.scm
syndication.scm gnu: Add cawbird. 2021-05-14 00:04:54 -04:00
synergy.scm
task-management.scm
task-runners.scm
tbb.scm
tcl.scm
telegram.scm
telephony.scm gnu: osip: Update to 5.2.1. 2021-06-02 12:53:10 +02:00
terminals.scm gnu: alacritty: Update to 0.7.2. 2021-05-14 21:08:07 +02:00
terraform.scm
tex.scm
texinfo.scm
text-editors.scm gnu: Add l3afpad. 2021-06-07 19:23:39 -04:00
textutils.scm
time.scm
tls.scm gnu: gnutls@3.6.16: Fix cross-compilation. 2021-06-06 23:12:18 +02:00
tmux.scm
tor.scm gnu: tor: Update to 0.4.5.8. 2021-05-10 18:20:15 +03:00
toys.scm
tryton.scm gnu: tryton: Allow disabling the test suite. 2021-05-28 11:36:03 +02:00
tv.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm gnu: libupnp: Update to 1.14.7. 2021-05-13 00:32:22 +02:00
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm gnu: git: Update to 2.32.0. 2021-06-06 18:34:12 +02:00
video.scm gnu: youtube-dl: Update to 2021.06.06. 2021-06-07 21:52:37 +02:00
vim.scm gnu: neovim: Use 'inputs' in phases instead of '%build-inputs'. 2021-06-04 13:34:46 +02:00
virtualization.scm gnu: Add lxcfs. 2021-06-05 23:39:29 +02:00
visidata.scm
vlang.scm
vnc.scm gnu: remmina: Update to 1.4.18. 2021-06-03 23:46:04 -04:00
vpn.scm
vulkan.scm
w3m.scm
wdiff.scm
web-browsers.scm gnu: lagrange: Update to 1.5.0. 2021-05-31 21:06:36 +02:00
web.scm gnu: monolith: Update to 2.5.0. 2021-06-03 14:24:35 +02:00
webkit.scm gnu: webkitgtk: Update to 2.32.1. 2021-05-13 00:32:23 +02:00
wget.scm gnu: wgetpaste: Update to 2.32. 2021-06-05 19:14:15 +02:00
wicd.scm
wine.scm gnu: wine: Update to 6.8. 2021-05-08 17:48:25 +02:00
wireservice.scm
wm.scm gnu: asciidoc: Remove Python 2 variant. 2021-05-18 22:23:49 +02:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: net-snmp: Omit static library. 2021-05-30 11:53:00 +02:00
xfce.scm gnu: xfce4-screenshooter: Update to 1.9.9. 2021-05-21 12:21:14 -04:00
xfig.scm
xiph.scm gnu: Use define-public in (gnu packages xiph). 2021-06-04 15:08:35 +02:00
xml.scm gnu: expat: Replace with 2.4.1 [fixes CVE-2013-0340]. 2021-06-02 17:07:15 -04:00
xnee.scm
xorg.scm gnu: xf86-video-vesa: Update to 2.5.0. 2021-06-07 10:38:54 +03:00
zile.scm
zwave.scm