guix/gnu/packages
Ricardo Wurmus fd6cd9de86
gnu: Add megahit.
* gnu/packages/bioinformatics.scm (megahit): New variable.
2022-10-05 17:59:04 +02:00
..
aux-files
patches gnu: Remove unused scotch patches. 2022-10-03 11:16:15 -04:00
abduco.scm
abiword.scm
accessibility.scm gnu: Add espeakup. 2022-09-21 13:20:56 +02:00
acct.scm
acl.scm
ada.scm
admin.scm gnu: wpa-supplicant: Enable OWE support. 2022-09-28 22:41:49 +02:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: gappa: Honor TESTS?. 2022-10-03 11:16:14 -04:00
android.scm
animation.scm
anthy.scm
antivirus.scm
apl.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm
astronomy.scm gnu: Add python-ephem. 2022-09-21 22:07:27 +02:00
attr.scm
audio.scm gnu: csound: Update to 6.16.2. 2022-10-02 14:54:21 +03:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr-xyz.scm
avr.scm
axoloti.scm
backup.scm
barrier.scm
base.scm
bash.scm gnu: Add blesh. 2022-09-14 08:51:35 +01:00
batik.scm
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: r-tximeta: Update to 1.14.1. 2022-10-03 19:08:09 +02:00
bioinformatics.scm gnu: Add megahit. 2022-10-05 17:59:04 +02:00
bison.scm
bittorrent.scm
boost.scm
bootloaders.scm gnu: u-boot-tools: Disable check for 100% coverage. 2022-09-15 16:53:07 +02:00
bootstrap.scm
bqn.scm
browser-extensions.scm
build-tools.scm gnu: Add meson-python. 2022-09-16 18:42:21 +02:00
busybox.scm gnu: busybox: Fix cross-compilation. 2022-09-26 23:29:38 +02:00
c.scm gnu: Add libdispatch. 2022-09-28 20:22:38 +02:00
calcurse.scm
calendar.scm gnu: gsimplecal: Update to 2.4.1. 2022-09-22 10:06:42 +02:00
ccache.scm
cdrom.scm
cedille.scm
certs.scm
check.scm gnu: catch-framework2: Rename variable to catch2. 2022-09-15 20:15:56 -04:00
chemistry.scm gnu: catch-framework2: Rename variable to catch2. 2022-09-15 20:15:56 -04:00
chez.scm
chicken.scm
chromium.scm gnu: ungoogled-chromium: Update to 106.0.5249.91-1. 2022-10-01 23:13:13 +02:00
ci.scm
cinnamon.scm
clojure.scm gnu: clojure-tools: Update to 1.11.1.1165. 2022-09-22 09:53:07 +08:00
cluster.scm
cmake.scm gnu: cmake: Update to 3.24.2. 2022-09-14 00:02:39 -04:00
cobol.scm
code.scm
commencement.scm
compression.scm
compton.scm
configuration-management.scm
conky.scm
connman.scm gnu: connman: Patch CVE-2022-32392, CVE-2022-32293. 2022-09-19 11:19:49 +03:00
containers.scm gnu: podman: Update to 4.2.1. 2022-09-27 11:04:30 +02:00
convmv.scm
cook.scm
coq.scm gnu: Add coq-mathcomp-bigenough. 2022-09-24 20:24:47 +02:00
cpio.scm
cpp.scm gnu: Add crc32c. 2022-09-28 20:22:38 +02:00
cppi.scm
cran.scm gnu: Add r-ggghost. 2022-09-28 22:10:33 +02:00
crates-graphics.scm gnu: rust-winit-0.24: Add missing development inputs. 2022-09-23 00:21:39 +02:00
crates-gtk.scm gnu: Add comments to the bottom of a few more package modules. 2022-09-14 09:33:11 +01:00
crates-io.scm gnu: rust-unicode-width-0.1: Update to 0.1.10. 2022-09-30 17:11:36 +03:00
cross-base.scm gnu: cross: Add default configure-flags. 2022-09-20 11:26:12 +03:00
crypto.scm gnu: Add keychain. 2022-09-22 09:56:31 +02:00
cryptsetup.scm
cups.scm gnu: cups-pk-helper: Replace polkit with polkit-duktape. 2022-09-13 00:20:37 -04:00
curl.scm
cvassistant.scm
cybersecurity.scm
cyrus-sasl.scm
darwin.scm
databases.scm gnu: apache-arrow: Update to 9.0.0. 2022-09-20 17:02:08 +02:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm
dejagnu.scm
dezyne.scm gnu: dezyne: Update to 2.16.1. 2022-09-13 15:08:41 +02:00
dhall.scm
dico.scm
dictionaries.scm
diffoscope.scm
digest.scm
direct-connect.scm
disk.scm
display-managers.scm
distributed.scm
django.scm
djvu.scm
dlang.scm
dns.scm
docbook.scm gnu: Add docbook-xsl-next. 2022-09-27 14:09:49 -04:00
docker.scm
documentation.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm gnu: Add shirah. 2022-09-16 12:21:32 +02:00
ed.scm
education.scm gnu: exercism: Remove input labels. 2022-10-01 23:48:02 +03:00
efi.scm
electronics.scm
elf.scm
elixir.scm
elm.scm gnu: Add elm-community-random-extra. 2022-09-28 15:15:15 -04:00
emacs-xyz.scm gnu: emacs-lsp-mode: Update to 26c4d3e. 2022-10-04 13:37:43 +02:00
emacs.scm gnu: emacs-next-pgtk: Inherit patches from emacs-next. 2022-09-19 07:23:41 +03:00
embedded.scm gnu: stcgal: Patch tests for PyYAML 6. 2022-09-14 21:08:34 +02:00
emulators.scm
enchant.scm gnu: catch-framework2: Rename variable to catch2. 2022-09-15 20:15:56 -04:00
engineering.scm gnu: catch-framework2: Rename variable to catch2. 2022-09-15 20:15:56 -04:00
enlightenment.scm gnu: enlightenment: Update to 0.25.4. 2022-09-19 11:12:44 +03:00
entr.scm
erlang.scm
esolangs.scm gnu: Add folders. 2022-09-14 20:45:33 +02:00
fabric-management.scm
fcitx.scm gnu: fcitx: Update to 4.2.9.9, use gexps and remove input labels. 2022-09-12 20:51:22 -04:00
fcitx5.scm
figlet.scm
file-systems.scm
file.scm
finance.scm gnu: monero-gui: Update to 0.18.1.2. 2022-10-01 10:03:30 +02:00
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: font-lxgw-wenkai: Update to 1.245.1. 2022-09-28 10:06:31 +08:00
fontutils.scm gnu: python-ufo2ft: Don't use pytest-runner. 2022-09-18 16:18:34 +02:00
forth.scm
fpga.scm gnu: Add openfpgaloader. 2022-09-16 13:17:08 +02:00
freedesktop.scm gnu: colord-gtk: Update to 0.3.0. 2022-09-13 00:20:39 -04:00
freeipmi.scm
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm
games.scm gnu: augustus: Update to 3.2.0. 2022-10-04 13:37:43 +02:00
gawk.scm
gcal.scm
gcc.scm gnu: isl: Remove outdated comment. 2022-10-03 11:16:14 -04:00
gd.scm
gdb.scm
genealogy.scm
genimage.scm
geo.scm gnu: libspatialite: Disable tests. 2022-09-26 17:35:31 +02:00
gettext.scm
ghostscript.scm
gimp.scm
gkrellm.scm
gl.scm
glib.scm gnu: Add glib-next. 2022-09-13 02:04:39 -04:00
gnome-xyz.scm gnu: Add gnome-shell-extension-unite-shell. 2022-09-28 23:20:45 +02:00
gnome.scm gnu: eog-plugins: Fix source URL. 2022-10-04 18:15:36 +02:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm gnu: gnucash: Update to 4.11 and use gexps. 2022-09-13 02:04:57 -04:00
gnunet.scm
gnupg.scm
gnustep.scm
gnuzilla.scm gnu: icedove: Update to 102.3.1 [security fixes]. 2022-10-04 20:36:24 +02:00
gobby.scm
golang.scm gnu: Add go-1.19. 2022-10-02 15:23:07 +03:00
gperf.scm
gpodder.scm
gps.scm
graph.scm gnu: python-louvain: Fix test. 2022-10-02 23:22:07 +02:00
graphics.scm
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: gtk: Update to 4.8.1. 2022-10-01 17:56:00 +02:00
guile-wm.scm
guile-xyz.scm gnu: guile-ini: Update to 0.5.2. 2022-09-26 15:35:37 +02:00
guile.scm
gv.scm
gxmessage.scm
hardware.scm
haskell-apps.scm gnu: git-annex: Update to 10.20220927. 2022-09-28 15:45:48 +03:00
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm gnu: Add ghc-ansi2html. 2022-09-12 14:22:50 +01:00
haskell.scm gnu: Add ghc-9.0. 2022-10-02 15:16:18 +03:00
haxe.scm
heads.scm
hexedit.scm
hugs.scm
hunspell.scm
hurd.scm
hyperledger.scm
i2p.scm
ibus.scm gnu: ibus: Build with GTK4. 2022-10-04 20:40:46 +02:00
icu4c.scm
idris.scm
idutils.scm
image-processing.scm gnu: vips: Update to 8.13.1. 2022-09-28 09:33:30 +08:00
image-viewers.scm
image.scm
imagemagick.scm
inklingreader.scm
inkscape.scm
installers.scm
instrumentation.scm gnu: Add libpatch. 2022-09-26 15:35:37 +02:00
ipfs.scm gnu: go-ipfs: Unbundle many dependencies. 2022-09-24 17:59:05 +02:00
irc.scm
irods.scm gnu: catch-framework2: Rename variable to catch2. 2022-09-15 20:15:56 -04:00
iso-codes.scm
jami.scm gnu: ffmpeg-jami: Update to 5.0.1 and enable tests. 2022-09-23 23:56:15 -04:00
java-compression.scm
java-graphics.scm
java-maths.scm
java.scm gnu: openjdk: Update to 18. 2022-09-27 10:05:54 -04:00
javascript.scm gnu: Add js-scianimator. 2022-09-28 22:10:33 +02:00
jemalloc.scm
jose.scm
jrnl.scm
julia-jll.scm
julia-xyz.scm
julia.scm
jupyter.scm
kawa.scm
kde-frameworks.scm gnu: qtwayland: Rename to qtwayland-5. 2022-09-29 23:19:55 -04:00
kde-games.scm
kde-internet.scm
kde-multimedia.scm
kde-pim.scm
kde-plasma.scm gnu: qtwayland: Rename to qtwayland-5. 2022-09-29 23:19:55 -04:00
kde-systemtools.scm
kde-utils.scm
kde.scm
kerberos.scm
key-mon.scm
kodi.scm
language.scm
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm gnu: Add idevicerestore. 2022-09-22 21:33:38 +02:00
license.scm
lighting.scm
linphone.scm
linux.scm gnu: linux-libre 4.9: Update to 4.9.330. 2022-09-30 10:10:44 -04:00
lirc.scm
lisp-check.scm gnu: sbcl-lisp-unit2: Update to 0.9.4. 2022-09-22 09:28:43 +02:00
lisp-xyz.scm gnu: Add cl-bubble-operator-upwards. 2022-09-19 11:11:56 +02:00
lisp.scm gnu: txr: Update to 282. 2022-09-18 18:52:28 +02:00
llvm.scm
logging.scm
logo.scm
loko.scm
lout.scm
lsof.scm
lua.scm gnu: luajit: Remove riscv64-linux from supported-systems. 2022-09-19 10:25:05 +03:00
lxde.scm gnu: lxsession: Use polkit-duktape. 2022-09-13 00:20:36 -04:00
lxqt.scm
m4.scm
machine-learning.scm gnu: guile-aiscm-next: Deprecate in favor of guile-aiscm. 2022-09-20 23:57:18 +02:00
magic-wormhole.scm
mail.scm
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mastodon.scm
mate.scm
maths.scm gnu: units: Update to 2.22. 2022-10-02 14:36:23 +03:00
matrix.scm gnu: pantalaimon: Update to 0.10.5. 2022-10-02 15:34:40 +03:00
maven-parent-pom.scm
maven.scm gnu: Add maven-sisu-plugin. 2022-09-24 19:04:07 +02:00
mc.scm
mcrypt.scm
medical.scm
mercury.scm
mes.scm
messaging.scm gnu: Add tdlib-1.8.0. 2022-10-02 23:18:43 +02:00
microcom.scm
minetest.scm
mingw.scm
moe.scm
monitoring.scm gnu: Add batsignal. 2022-09-24 17:59:05 +02:00
moreutils.scm
motti.scm
mp3.scm
mpd.scm
mpi.scm
mtools.scm
multiprecision.scm gnu: mpfi: Update to 1.5.4-1.b982534. 2022-10-03 11:16:15 -04:00
music.scm gnu: quodlibet: Fix build. 2022-09-30 15:48:39 +02:00
musl.scm
myrddin.scm
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: blueman: Update to 2.3.2. 2022-09-27 10:53:44 +02:00
nfs.scm gnu: nfs-utils: Remove unused input. 2022-09-16 18:42:20 +02:00
nickle.scm
nicotine.scm
nim.scm
ninja.scm
node-xyz.scm
node.scm
notcurses.scm
noweb.scm
nss.scm
ntp.scm gnu: Explicitly use OpenSSL 1.1 in packages that don't support 3.0. 2022-09-18 16:18:35 +02:00
nutrition.scm
nvi.scm
ocaml.scm gnu: Remove ocaml-craml. 2022-10-03 11:16:15 -04:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm
openpgp.scm
openstack.scm
orange.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix: Update to 17134b9. 2022-10-04 18:15:35 +02:00
pantheon.scm
parallel.scm gnu: parallel: Update to 20220922. 2022-09-28 15:45:49 +03:00
pascal.scm
password-utils.scm
patchutils.scm
patool.scm
pciutils.scm
pcre.scm
pdf.scm gnu: zathura: Remove input labels. 2022-09-22 10:45:19 +03:00
pem.scm
pep.scm
perl-check.scm
perl-compression.scm
perl-maths.scm
perl-web.scm
perl.scm
perl6.scm
phabricator.scm
photo.scm
php.scm gnu: Explicitly use OpenSSL 1.1 in packages that don't support 3.0. 2022-09-18 16:18:35 +02:00
piet.scm
pikchr.scm
pkg-config.scm gnu: Add pkgconf. 2022-09-13 02:04:59 -04:00
plan9.scm
plotutils.scm gnu: asymptote: Update to 2.83. 2022-09-18 13:28:41 +02:00
poedit.scm
polkit.scm
popt.scm
presentation.scm
pretty-print.scm gnu: source-highlight: Fix lesspipe file name and use gexps. 2022-09-27 11:08:55 +02:00
printers.scm
profiling.scm
prolog.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
python-build.scm gnu: Add python-editables. 2022-09-24 20:24:50 +02:00
python-check.scm
python-compression.scm
python-crypto.scm gnu: Add python-blake3. 2022-09-25 21:24:30 +02:00
python-science.scm gnu: Add python-simplespectral. 2022-09-28 11:31:49 +02:00
python-web.scm gnu: Add awscli-2. 2022-10-04 18:15:36 +02:00
python-xyz.scm gnu: Add python-executor. 2022-10-04 18:15:36 +02:00
python.scm
qt.scm gnu: Add qtwayland, version 6.3.1. 2022-09-29 23:19:55 -04:00
racket.scm
radio.scm gnu: nanovna-saver: Update to 0.5.3. 2022-10-01 18:22:53 +02:00
ragel.scm
rails.scm
raspberry-pi.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
rednotebook.scm
regex.scm
robotics.scm
rocm.scm
rpc.scm
rpm.scm
rrdtool.scm
rsync.scm gnu: rsync: Update to 3.2.6. 2022-09-14 23:36:31 +02:00
ruby.scm
rush.scm
rust-apps.scm gnu: exa: Only build with pandoc when supported. 2022-09-28 13:52:12 +03:00
rust.scm
sagemath.scm
samba.scm Re-instate "gnu: samba: Fix corrupted man pages." 2022-09-27 15:45:29 -04:00
sawfish.scm
scanner.scm
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdl.scm gnu: sdl2: Use ibus-minimal instead of ibus. 2022-10-04 20:40:46 +02:00
search.scm
security-token.scm gnu: catch-framework2: Rename variable to catch2. 2022-09-15 20:15:56 -04:00
selinux.scm gnu: python-setools: Update to 4.4.0. 2022-10-02 23:21:58 +02:00
sequoia.scm
serialization.scm
serveez.scm
shells.scm gnu: xonsh: Update to 0.13.3. 2022-09-22 10:02:38 +08:00
shellutils.scm gnu: Add grml-zsh-config. 2022-09-12 14:22:50 +01:00
simh.scm
simulation.scm gnu: catch-framework2: Rename variable to catch2. 2022-09-15 20:15:56 -04:00
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
solidity.scm
speech.scm
sphinx.scm gnu: python-sphinx-theme-builder: Update to 0.2.0b1. 2022-09-11 19:43:16 +02:00
spice.scm gnu: virt-viewer: Update to 11.0 and enable more features. 2022-09-15 22:39:12 -04:00
spreadsheet.scm
sqlite.scm
squirrel.scm
ssh.scm
sssd.scm
stalonetray.scm
statistics.scm gnu: r-spams: Update to 2.6.1. 2022-10-03 11:16:15 -04:00
stb.scm
stenography.scm
storage.scm
suckless.scm
swig.scm
sync.scm
syncthing.scm
syndication.scm gnu: gfeeds: Update to 1.0.3. 2022-10-01 18:10:01 +02:00
synergy.scm
task-management.scm
task-runners.scm
tbb.scm
tcl.scm
telegram.scm gnu: qtwayland: Rename to qtwayland-5. 2022-09-29 23:19:55 -04:00
telephony.scm gnu: pjproject: Update to 2.12.1. 2022-09-23 23:56:14 -04:00
terminals.scm gnu: libvterm: Update to 0.3.0. 2022-10-02 14:31:41 +03:00
terraform.scm
tex.scm gnu: Add texlive-generic-xstring. 2022-10-02 23:20:05 +02:00
texinfo.scm
text-editors.scm gnu: Add lite-xl. 2022-09-29 22:59:48 +02:00
textutils.scm gnu: Add txt2tags. 2022-09-12 14:22:49 +01:00
time.scm
tls.scm
tmux.scm
toolkits.scm
tor.scm
toys.scm
tryton.scm
tv.scm
uglifyjs.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm gnu: mercurial: Update to 6.2.2. 2022-09-11 19:43:15 +02:00
video.scm gnu: ffmpeg@4: Build against SDL2 2.0 so 'ffplay' gets built. 2022-10-02 23:18:42 +02:00
vim.scm gnu: neovim: Update to 0.8.0. 2022-10-02 14:31:45 +03:00
virtualization.scm gnu: qemu: Disable qtest-aarch64/migration-test test. 2022-09-26 12:06:57 -04:00
vlang.scm
vnc.scm
vpn.scm
vulkan.scm
w3m.scm
wdiff.scm
weather.scm
web-browsers.scm
web.scm gnu: hitch: Update to 1.7.3. 2022-09-16 18:42:20 +02:00
webkit.scm gnu: webkitgtk: Update to 2.38.0. 2022-10-01 17:56:00 +02:00
wget.scm
wine.scm
wireservice.scm
wm.scm gnu: swaylock-effects: Update to 1.6.10, use G-expressions. 2022-09-28 10:36:59 +08:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: catch-framework2: Rename variable to catch2. 2022-09-15 20:15:56 -04:00
xfce.scm gnu: xfce4-places-plugin: Update to 1.8.2. 2022-09-22 09:44:40 +08:00
xfig.scm
xiph.scm
xml.scm gnu: pugixml: Update to 1.12.1. 2022-10-01 17:56:00 +02:00
xnee.scm
xorg.scm gnu: xvfb-run: Update to 1.20.11-1. 2022-09-12 20:51:23 -04:00
zig.scm
zile.scm
zwave.scm