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Author SHA1 Message Date
Ricardo Wurmus
028166eec9
gnu: r-rcppnumerical: Update to 0.5-0. 
* gnu/packages/cran.scm (r-rcppnumerical): Update to 0.5-0.
[native-inputs]: Add r-knitr and r-rmarkdown.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
6264b80731
gnu: r-partykit: Update to 1.2-18. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-18.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
55c0a27187
gnu: r-ape: Update to 5.7-1. 
* gnu/packages/cran.scm (r-ape): Update to 5.7-1.
[propagated-inputs]: Add r-digest.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
42c4356f9c
gnu: r-ggmap: Update to 3.0.2. 
* gnu/packages/cran.scm (r-ggmap): Update to 3.0.2.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
441c60d2b2
gnu: r-gensa: Update to 1.1.8. 
* gnu/packages/cran.scm (r-gensa): Update to 1.1.8.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
4235e02dd9
gnu: r-rstpm2: Update to 1.6.2. 
* gnu/packages/cran.scm (r-rstpm2): Update to 1.6.2.
 2023-03-19 16:11:54 +01:00
Ricardo Wurmus
17b68a4ac5
gnu: r-fastmap: Update to 1.1.1. 
* gnu/packages/cran.scm (r-fastmap): Update to 1.1.1.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
29f95b47ec
gnu: r-modelenv: Update to 0.1.1. 
* gnu/packages/cran.scm (r-modelenv): Update to 0.1.1.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
b71f95b08e
gnu: r-readxl: Update to 1.4.2. 
* gnu/packages/cran.scm (r-readxl): Update to 1.4.2.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
2416e5dcd4
gnu: r-ggalluvial: Update to 0.12.5. 
* gnu/packages/cran.scm (r-ggalluvial): Update to 0.12.5.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
02cdebebff
gnu: r-climaemet: Update to 1.1.0. 
* gnu/packages/cran.scm (r-climaemet): Update to 1.1.0.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
d1dbfcc4cb
gnu: r-gson: Update to 0.1.0. 
* gnu/packages/cran.scm (r-gson): Update to 0.1.0.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
58e114a702
gnu: r-googlevis: Update to 0.7.1. 
* gnu/packages/cran.scm (r-googlevis): Update to 0.7.1.
[native-inputs]: Add r-rmarkdown.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
332d829c6e
gnu: r-castor: Update to 1.7.8. 
* gnu/packages/cran.scm (r-castor): Update to 1.7.8.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
3556f4319c
gnu: r-cachem: Update to 1.0.7. 
* gnu/packages/cran.scm (r-cachem): Update to 1.0.7.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
ff80f791e9
gnu: r-afpt: Update to 1.1.0.3. 
* gnu/packages/cran.scm (r-afpt): Update to 1.1.0.3.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
a28a357675
gnu: r-mutoss: Update to 0.1-13. 
* gnu/packages/bioconductor.scm (r-mutoss): Update to 0.1-13.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
55710837d9
gnu: r-valr: Update to 0.6.7. 
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.7.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
ab428404de
gnu: r-numbat: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.2.2.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
9d4e62ccce
gnu: r-memuse: Adjust indentation. 
* gnu/packages/cran.scm (r-memuse): Adjust indentation.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
af861fdead
gnu: r-shadowtext: Update indentation. 
* gnu/packages/cran.scm (r-shadowtext): Adjust indentation.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
257ef3f659
gnu: Add r-mclogit. 
* gnu/packages/cran.scm (r-mclogit): New variable.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
8eccc02ec9
gnu: Add r-memisc. 
* gnu/packages/cran.scm (r-memisc): New variable.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
ac5011546d
gnu: r-qs: Update to 0.25.5. 
* gnu/packages/cran.scm (r-qs): Update to 0.25.5.
[inputs]: Remove zlib.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
a1fcc6c595
gnu: r-leaflet: Update to 2.1.2. 
* gnu/packages/cran.scm (r-leaflet): Update to 2.1.2.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
2c58e06a17
gnu: r-sf: Update to 1.0-11. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-11.
[inputs]: Remove zlib.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
47bce97778
gnu: r-ggvis: Update to 0.4.8. 
* gnu/packages/cran.scm (r-ggvis): Update to 0.4.8.
[source]: Remove five minified JavaScript files.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild and js-lodash.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
1b50213ad7
gnu: r-opencpu: Update to 2.2.9. 
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.9.
[source]: Remove two minified JavaScript files.
[arguments]: Add build phases 'process-javascript.
[native-inputs]: Add esbuild, r-r-rsp, and js-query.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
6b41dccf35
gnu: r-bookdown: Update to 0.33. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.33.
[source]: Delete three minified JavaScript files.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild, js-clipboard, js-lunarjs, and js-mathquill.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
fce72b3522
gnu: r-haven: Update to 2.5.2. 
* gnu/packages/cran.scm (r-haven): Update to 2.5.2.
[arguments]: Update to link with readstat.
[inputs]: Add zlib.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
40cb3c30fc
gnu: readstat: Update to 1.1.9. 
* gnu/packages/statistics.scm (readstat): Update to 1.1.9.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
5050034b4e
gnu: r-httpuv: Update to 1.6.9. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.9.
[inputs]: Replace libuv with libuv-for-r-httpuv.
[arguments]: Patch Makevars to link with that variant of libuv.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
ef86b0b12e
gnu: Add libuv-for-r-httpuv. 
* gnu/packages/libevent.scm (libuv-for-r-httpuv): New variable.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus
e72d0d9208
gnu: r-dt: Update to 0.27. 
* gnu/packages/statistics.scm (r-dt): Update to 0.27.
 2023-03-19 16:11:49 +01:00
Lars-Dominik Braun
f9702aa9fd
gnu: Add python-brian2. 
* gnu/packages/machine-learning.scm (python-brian2): New variable.
 2023-03-19 11:33:52 +01:00
Lars-Dominik Braun
c16add7fd9
gnu: python-pillow: Fix CVE-2022-45199. 
Fixes: <https://issues.guix.gnu.org/issue/61172>

* gnu/packages/python-xyz.scm (python-pillow/security-fixes): New variable.
(python-pillow): Add replacement.
* gnu/packages/patches/python-pillow-CVE-2022-45199.patch: New file.
* gnu/local.mk: Register it.
 2023-03-19 10:57:00 +01:00
Liliana Marie Prikler
d7b4ecdb4c
gnu: Add a4pdf. 
* gnu/packages/pdf.scm (a4pdf): New variable.
 2023-03-19 09:25:36 +01:00
Liliana Marie Prikler
fa50974134
gnu: komikku: Update to 1.14.0. 
* gnu/packages/gnome.scm (komikku): Update to 1.14.0.
 2023-03-19 09:25:36 +01:00
Ekaitz Zarraga
d59eb81b5c
gnu: zig: Build against a baseline CPU. 
* gnu/packages/zig.scm (zig-0.10)[#:configure-flags]: Add
“-DZIG_TARGET_MCPU=baseline”.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2023-03-19 09:25:36 +01:00
Arun Isaac
34fed18169
gnu: Add tissue. 
* gnu/packages/web.scm (tissue): New variable.
 2023-03-18 17:23:32 +00:00
Yovan Naumovski
99114eb638
gnu: bemenu: Update to 0.6.14. 
* gnu/packages/xdisorg.scm (bemenu): Update to 0.6.14.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:36 +01:00
Bruno Victal
20aa4c30fb
services: dict: Deprecate 'dicod-service' procedure. 
* doc/guix.texi (Miscellaneous Services): Remove 'dicod-service' mention.
* gnu/services/dict.scm (dicod-service): Deprecate procedure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:36 +01:00
conses
511ae8325d
home: services: Add home-xmodmap-service-type. 
* gnu/home/services/desktop.scm (home-xmodmap-service-type)
(home-xmodmap-configuration): New variables;
(serialize-xmodmap-configuration)
(xmodmap-shepherd-service): New procedures;
* doc/guix.texi (Desktop Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:36 +01:00
Vivien Kraus
97a759769d
gnu: guile-gnutls: Do not expect gnulib shebangs to work. 
* gnu/packages/tls.scm (guile-gnutls) [phase patch-more-shebangs]: Fix how
autogen.sh invokes gnulib-tool, and how configure.ac invokes git-version-gen,
so as not to rely on shebangs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:35 +01:00
Vivien Kraus
25cad45639
gnu: gnulib: Restore shebangs. 
* gnu/packages/build-tools.scm (gnulib)[arguments]: Add
'restore-shebangs' phase.
[inputs, native-inputs]: Add bash-minimal.
[phase let-autogen-execute-gnulib-tool]: Specify a shell to execute
gnulib-tool from autogen.sh.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:35 +01:00
Antero Mejr
2135f69dc0
ui: format 'display-hint' output when no arguments are passed. 
When display-hint is given format specifiers such as "~%" but no arguments,
it does not format the output, causing the specifiers to be visible in the
displayed text.

* guix/ui.scm (display-hint): Format output when no arguments are passed.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-03-17 23:20:35 +01:00
Ludovic Courtès
d15dbdb79c
pack: "fakechroot" engine passes the recursive RUNPATH to ld.so. 
This is a followup to 58abd58739, which
did not fully address <https://issues.guix.gnu.org/43491>.

* guix/scripts/pack.scm (wrapped-package)[build](runpath): Rewrite in
terms of 'file-needed/recursive'.
 2023-03-17 23:20:35 +01:00
Ludovic Courtès
b5a70370f5
services: console-font: 'stop' method always returns #f. 
The 'stop' method of Shepherd services is supposed to return #f on
success.

* gnu/services/base.scm (console-font-shepherd-services): 'stop' method
returns #f.
 2023-03-17 23:20:35 +01:00
Maxim Cournoyer
933051281f
Revert "tests: pack: Fix indentation." 
This reverts commit ac1d530d56.
 2023-03-17 12:14:14 -04:00
Maxim Cournoyer
d0b7858968
Revert gexp->derivation and computed-file indentation rules. 
This reverts b1c25e2ce3 and partially reverts
82daab4281, which means the computed-file and
gexp->derivation procedures are now indented as normal procedures.

Rationale: see the discussion at
https://lists.gnu.org/archive/html/guix-devel/2023-03/msg00008.html.  In a
nutshell: the convention is to use special rules for special forms (macros),
not for procedures.

* .dir-locals.el (scheme-mode): Remove the special indentation rules for
the computed-file and gexp->derivation procedures.
 2023-03-17 12:11:29 -04:00