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45391 commits

Author SHA1 Message Date
Ricardo Wurmus
bb841742dd
gnu: r-interactionset: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
595b6c9a89
gnu: r-riboseqr: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
88af7049ea
gnu: r-riboprofiling: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.16.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b0897fbf95
gnu: r-chipcomp: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.16.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
d77228232d
gnu: r-bayseq: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
23ce5ad1d6
gnu: r-qdnaseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.22.0.
[propagated-inputs]: Remove r-biocparallel; add r-future and r-future-apply.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
8f2a4ea18b
gnu: r-cghcall: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.48.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
8341f7062e
gnu: r-cghbase: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.46.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b6c2f098ba
gnu: r-marray: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.64.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
cf8968d7e6
gnu: r-chippeakanno: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
70eb483a28
gnu: r-graph: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.64.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
16d49c2a7c
gnu: r-multtest: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.42.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
ba74434fc4
gnu: r-ripseeker: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.26.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
73883f0f14
gnu: r-diffbind: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.14.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
bcf711b58b
gnu: r-qvalue: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.18.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
084c651cbf
gnu: r-oligo: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.50.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
79820b9fe9
gnu: r-oligoclasses: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.48.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
7778e91a2d
gnu: r-geneplotter: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.64.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
7ccbaf1b6e
gnu: r-reportingtools: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.26.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
2e73ea955b
gnu: r-regioner: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
ddd3673928
gnu: r-hpar: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.28.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
7a111924ee
gnu: r-annotate: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.64.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
ce5162d09d
gnu: r-affxparser: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.58.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
1693534f76
gnu: r-affycoretools: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.2.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
f561421d04
gnu: r-affycontam: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.44.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
c2fa63e905
gnu: r-affycompatible: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.46.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
5d87f12615
gnu: r-affycomp: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.62.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
be5e4e9615
gnu: r-biocgenerics: Update to 0.32.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.32.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
2c8433ca0a
gnu: r-depecher: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.0.
[arguments]: Remove field.
[propagated-inputs]: Remove r-biocparallel; add r-fnn and r-robustbase.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
7a62d5e0c2
gnu: Add r-cytoml. 
* gnu/packages/bioconductor.scm (r-cytoml): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
6aedc80514
gnu: Add r-opencyto. 
* gnu/packages/bioconductor.scm (r-opencyto): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
b700b9ec21
gnu: Add r-flowstats. 
* gnu/packages/bioconductor.scm (r-flowstats): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
82c1111745
gnu: Add r-flowworkspace. 
* gnu/packages/bioconductor.scm (r-flowworkspace): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
f1964519e7
gnu: Add r-rprotobuflib. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
c8ab9eb1b4
gnu: Add r-flowclust. 
* gnu/packages/bioconductor.scm (r-flowclust): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
0dd4b7d732
gnu: Add r-flowviz. 
* gnu/packages/bioconductor.scm (r-flowviz): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
dbfce8ff5b
gnu: r-rgraphviz: Update to 2.30.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.30.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
9d1099eb07
gnu: r-preprocesscore: Update to 1.48.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.48.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
257b3b812c
gnu: Add r-knn-covertree. 
* gnu/packages/cran.scm (r-knn-covertree): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
5aa7e882fa
gnu: Add r-ggplot-multistats. 
* gnu/packages/cran.scm (r-ggplot-multistats): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
f5f440312d
gnu: Add r-ggcyto. 
* gnu/packages/bioconductor.scm (r-ggcyto): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
15ac0c195c
gnu: Add r-ncdfflow. 
* gnu/packages/bioconductor.scm (r-ncdfflow): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b4aee31dcb
gnu: Add r-cytolib. 
* gnu/packages/bioconductor.scm (r-cytolib): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b4a22ccaaa
gnu: Add r-multidataset. 
* gnu/packages/bioconductor.scm (r-multidataset): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
e5d722fb4c
gnu: Add r-biocversion. 
* gnu/packages/bioconductor.scm (r-biocversion): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
eb15df8dea
gnu: Add r-qqman. 
* gnu/packages/cran.scm (r-qqman): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b5b6e74e15
gnu: Add r-idpmisc. 
* gnu/packages/cran.scm (r-idpmisc): New variable.
 2019-12-15 15:38:51 +01:00
Björn Höfling
58c3a4f596
gnu: java-svg-salamander: Return #t from snippet. 
* gnu/packages/java.scm (java-svg-salamander)[origin]:
Return #t from snippet.
 2019-12-15 12:31:35 +01:00
Brett Gilio
4fb8e2744a
gnu: emacs-cider: Update home-page. 
* gnu/packages/emacs-xyz.scm (emacs-cider)[home-page]: Change to https://cider.mx/.
 2019-12-14 18:46:06 -06:00
Brett Gilio
7d4d881266
gnu: emacs-cider: Update to 0.23.0. 
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 0.23.0.
[propagated-inputs]: Add emacs-seq, emacs-parseedn.
 2019-12-14 18:45:22 -06:00
Brett Gilio
47a9a59270
gnu: Add emacs-parseedn. 
* gnu/packages/emacs-xyz.scm (emacs-parseedn): New variable.
 2019-12-14 18:44:50 -06:00
Brett Gilio
586e1611b9
gnu: Add emacs-parseclj. 
* gnu/packages/emacs-xyz.scm (emacs-parseclj): New variable.
 2019-12-14 18:44:25 -06:00
Konrad Hinsen
4ac5d4fee1
gnu: Add gfortran-toolchain 
* gnu/packages/commencement.scm: (gfortran-toolchain): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-15 00:34:05 +01:00
Ludovic Courtès
178e550034
gnu: bootloaders: Avoid #:select on (gnu packages …) module. 
* gnu/packages/bootloaders.scm: Remove use of #:select.
 2019-12-15 00:34:05 +01:00
Brett Gilio
9d97a11f04
gnu: emacs-telega: Update to 0.5.3-1. 
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.3-1.
[version]: Correct the version number used in the package elisp code itself.
 2019-12-14 14:07:22 -06:00
Alex Griffin
d900e1f675
gnu: Add htmlcxx. 
* gnu/packages/web.scm (htmlcxx): New variable.
 2019-12-14 13:22:54 -06:00
Brett Gilio
e9d8dee6c3
gnu: emacs-doom-themes: Update to 2.1.6-2. 
* gnu/packages/emacs-xyz.scm (emacs-doom-themes): Update to 2.1.6-2.
[arguments]: Disable byte-compilation regarding issue in upstream.
<https://github.com/hlissner/emacs-doom-themes/issues/314>.
 2019-12-14 13:06:07 -06:00
Julien Lepiller
5c1bd7b8d1
gnu: josm: Update to 15553. 
* gnu/packages/geo.scm (josm): Update to 15553.
 2019-12-14 17:43:17 +01:00
Mathieu Othacehe
94de8d0a7f
gnu: Add u-boot-pine64-lts-bootloader. 
* gnu/bootloader/u-boot.scm (u-boot-pine64-lts-bootloader): New variable.
 2019-12-14 17:41:10 +01:00
Mathieu Othacehe
db78fc0679
gnu: bootloaders: Fix make-u-boot-sunxi64-package cross-compilation. 
* gnu/packages/bootloaders.scm (make-u-boot-sunxi64-package)[arguments]:
Search in native-inputs to fix cross-compilation.
 2019-12-14 17:41:10 +01:00
Mathieu Othacehe
af58b275c9
gnu: Add u-boot-pine64-lts. 
* gnu/packages/bootloaders.scm (u-boot-pine64-lts): New variable.
 2019-12-14 17:41:09 +01:00
Ricardo Wurmus
5c0b5b8ad7
gnu: Add r-adamethods. 
* gnu/packages/cran.scm (r-adamethods): New variable.
 2019-12-14 13:35:58 +01:00
Ricardo Wurmus
c67508079d
gnu: Add r-anthropometry. 
* gnu/packages/cran.scm (r-anthropometry): New variable.
 2019-12-14 13:35:58 +01:00
Ricardo Wurmus
c71724653a
gnu: Add r-shapes. 
* gnu/packages/cran.scm (r-shapes): New variable.
 2019-12-14 13:35:58 +01:00
Ricardo Wurmus
ccc2c19b02
gnu: Add r-archetypes. 
* gnu/packages/cran.scm (r-archetypes): New variable.
 2019-12-14 13:35:58 +01:00
Ricardo Wurmus
9fd2d4fdb1
gnu: Add r-depth. 
* gnu/packages/cran.scm (r-depth): New variable.
 2019-12-14 13:35:58 +01:00
Ricardo Wurmus
9cd3ae8620
gnu: Add r-icge. 
* gnu/packages/cran.scm (r-icge): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
86a760cc67
gnu: Add r-biclust. 
* gnu/packages/cran.scm (r-biclust): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
9906cb80de
gnu: Add r-flexclust. 
* gnu/packages/cran.scm (r-flexclust): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
94ecf71344
gnu: Add r-additivitytests. 
* gnu/packages/cran.scm (r-additivitytests): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
5458490ebb
gnu: Add r-tolerance. 
* gnu/packages/cran.scm (r-tolerance): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
09e9ad334a
gnu: Add r-univoutl. 
* gnu/packages/cran.scm (r-univoutl): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
0b13a75716
gnu: Add r-adagio. 
* gnu/packages/cran.scm (r-adagio): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
2a1fd51864
gnu: Add r-adabag. 
* gnu/packages/cran.scm (r-adabag): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
154555e42f
gnu: Add r-acuityview. 
* gnu/packages/cran.scm (r-acuityview): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
5e2ad37684
gnu: Add r-imager. 
* gnu/packages/cran.scm (r-imager): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
7dd1fbf9ee
gnu: Add r-readbitmap. 
* gnu/packages/cran.scm (r-readbitmap): New variable.
 2019-12-14 13:35:57 +01:00
Ricardo Wurmus
6968aa2fe7
gnu: Add r-bmp. 
* gnu/packages/cran.scm (r-bmp): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
7faa05377e
gnu: Add r-actuar. 
* gnu/packages/cran.scm (r-actuar): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
1830e0383b
gnu: Add r-expint. 
* gnu/packages/cran.scm (r-expint): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
5f08fa64f0
gnu: Add r-actogrammr. 
* gnu/packages/cran.scm (r-actogrammr): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
a5d4dc7efb
gnu: Add r-activpalprocessing. 
* gnu/packages/cran.scm (r-activpalprocessing): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
bbaab25396
gnu: Add r-activpal. 
* gnu/packages/cran.scm (r-activpal): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
6f94a3e5f5
gnu: Add r-activityindex. 
* gnu/packages/cran.scm (r-activityindex): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
89d4f154b9
gnu: Add r-activitycounts. 
* gnu/packages/cran.scm (r-activitycounts): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
7f960d81fb
gnu: Add r-activedriver. 
* gnu/packages/cran.scm (r-activedriver): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
402dae07b5
gnu: Add r-actigraphy. 
* gnu/packages/cran.scm (r-actigraphy): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
77a5bf938f
gnu: Add r-fda. 
* gnu/packages/cran.scm (r-fda): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
c090b9977c
gnu: Add r-actfrag. 
* gnu/packages/cran.scm (r-actfrag): New variable.
 2019-12-14 13:35:56 +01:00
Ricardo Wurmus
6790adf338
gnu: Add r-ineq. 
* gnu/packages/cran.scm (r-ineq): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
d024207e7b
gnu: Add r-actcd. 
* gnu/packages/cran.scm (r-actcd): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
70c0dbe73f
gnu: Add r-gdina. 
* gnu/packages/cran.scm (r-gdina): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
6f0a5ab098
gnu: Add r-alabama. 
* gnu/packages/cran.scm (r-alabama): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
ffecbcbf51
gnu: Add r-acswr. 
* gnu/packages/cran.scm (r-acswr): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
0ea0b2dd46
gnu: Add r-acss. 
* gnu/packages/cran.scm (r-acss): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
07d958fe0e
gnu: Add r-acss-data. 
* gnu/packages/cran.scm (r-acss-data): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
49e9a9aea2
gnu: Add r-acs. 
* gnu/packages/cran.scm (r-acs): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
d015db6f57
gnu: Add r-acrt. 
* gnu/packages/cran.scm (r-acrt): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
4b44bfb6ec
gnu: Add r-acrosstic. 
* gnu/packages/cran.scm (r-acrosstic): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
c3f5989c8f
gnu: Add r-treeclust. 
* gnu/packages/cran.scm (r-treeclust): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
3bc2c21043
gnu: Add r-acrm. 
* gnu/packages/cran.scm (r-acrm): New variable.
 2019-12-14 13:35:55 +01:00
Ricardo Wurmus
6c2dcba99d
gnu: Add r-dummies. 
* gnu/packages/cran.scm (r-dummies): New variable.
 2019-12-14 13:35:54 +01:00
Ricardo Wurmus
6afc037e74
gnu: Add r-kernelfactory. 
* gnu/packages/cran.scm (r-kernelfactory): New variable.
 2019-12-14 13:35:54 +01:00
Ricardo Wurmus
270529f633
gnu: Add r-genalg. 
* gnu/packages/cran.scm (r-genalg): New variable.
 2019-12-14 13:35:54 +01:00
Ricardo Wurmus
f18c0544f6
gnu: Add r-ada. 
* gnu/packages/cran.scm (r-ada): New variable.
 2019-12-14 13:35:54 +01:00
Ricardo Wurmus
56cba940c3
gnu: Add r-acp. 
* gnu/packages/cran.scm (r-acp): New variable.
 2019-12-14 13:35:54 +01:00
Ricardo Wurmus
c12227d971
gnu: Add r-acousticndlcoder. 
* gnu/packages/cran.scm (r-acousticndlcoder): New variable.
 2019-12-14 13:35:54 +01:00
Ricardo Wurmus
19172e12ef
gnu: Add r-seewave. 
* gnu/packages/cran.scm (r-seewave): New variable.
 2019-12-14 13:35:54 +01:00
Ricardo Wurmus
cb350053da
gnu: Add r-tuner. 
* gnu/packages/cran.scm (r-tuner): New variable.
 2019-12-14 13:35:54 +01:00
Ricardo Wurmus
5d887a0355
gnu: Add r-acopula. 
* gnu/packages/cran.scm (r-acopula): New variable.
 2019-12-14 13:35:54 +01:00
Ricardo Wurmus
eff3e8a471
gnu: Add r-acnr. 
* gnu/packages/cran.scm (r-acnr): New variable.
 2019-12-14 13:35:54 +01:00
Ricardo Wurmus
217cd2e3ee
gnu: Add r-r-devices. 
* gnu/packages/cran.scm (r-r-devices): New variable.
 2019-12-14 13:35:53 +01:00
Ricardo Wurmus
2fe1e66c4d
gnu: Add r-r-filesets. 
* gnu/packages/cran.scm (r-r-filesets): New variable.
 2019-12-14 13:35:53 +01:00
Ricardo Wurmus
8e6f63dd83
gnu: Add r-activepathways. 
* gnu/packages/bioconductor.scm (r-activepathways): New variable.
 2019-12-14 13:35:53 +01:00
Mark H Weaver
3e9e242aa5
gnu: linux-libre: Update to 5.3.16. 
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.16.
(linux-libre-5.3-pristine-source): Update hash.
 2019-12-13 23:09:39 -05:00
Mark H Weaver
4e410c9d23
gnu: linux-libre@4.19: Update to 4.19.89. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.89.
(linux-libre-4.19-pristine-source): Update hash.
 2019-12-13 23:08:25 -05:00
Ricardo Wurmus
9f9520a129
gnu: bluez-alsa: Update to 2.0.0. 
* gnu/packages/audio.scm (bluez-alsa): Update to 2.0.0.
[source]: Use git-file-name.
[arguments]: Override ALSA plugin directory and dbus configuration directory.
[inputs]: Add dbus.
 2019-12-13 22:53:19 +01:00
Ricardo Wurmus
1c2e3d7d31
gnu: Add r-r-huge. 
* gnu/packages/cran.scm (r-r-huge): New variable.
 2019-12-13 22:41:41 +01:00
Ricardo Wurmus
2dc8723abd
gnu: Add r-acmer. 
* gnu/packages/cran.scm (r-acmer): New variable.
 2019-12-13 22:41:40 +01:00
Ricardo Wurmus
73f055df34
gnu: Add r-acmeeqtl. 
* gnu/packages/cran.scm (r-acmeeqtl): New variable.
 2019-12-13 22:41:40 +01:00
Ricardo Wurmus
fa82997fea
gnu: Add r-filematrix. 
* gnu/packages/cran.scm (r-filematrix): New variable.
 2019-12-13 22:41:40 +01:00
Ricardo Wurmus
542590c5a3
gnu: Add r-acm4r. 
* gnu/packages/cran.scm (r-acm4r): New variable.
 2019-12-13 22:41:40 +01:00
Ricardo Wurmus
220557a7f3
gnu: Add r-acid. 
* gnu/packages/cran.scm (r-acid): New variable.
 2019-12-13 22:41:40 +01:00
Ricardo Wurmus
6cc356c353
gnu: Add r-gamlss. 
* gnu/packages/cran.scm (r-gamlss): New variable.
 2019-12-13 22:41:40 +01:00
Ricardo Wurmus
3b89a8af7a
gnu: Add r-gamlss-data. 
* gnu/packages/cran.scm (r-gamlss-data): New variable.
 2019-12-13 22:41:40 +01:00
Ricardo Wurmus
a8a7ba9acb
gnu: Add r-acfmperiod. 
* gnu/packages/cran.scm (r-acfmperiod): New variable.
 2019-12-13 22:41:40 +01:00
Ricardo Wurmus
43a70edc29
gnu: Add r-acet. 
* gnu/packages/cran.scm (r-acet): New variable.
 2019-12-13 22:41:40 +01:00
Ricardo Wurmus
1442ca7340
gnu: Add r-acebayes. 
* gnu/packages/cran.scm (r-acebayes): New variable.
 2019-12-13 22:41:40 +01:00
Ricardo Wurmus
390bc8726b
gnu: Add r-lhs. 
* gnu/packages/cran.scm (r-lhs): New variable.
 2019-12-13 22:41:39 +01:00
Ricardo Wurmus
e6bf147293
gnu: Add r-randtoolbox. 
* gnu/packages/cran.scm (r-randtoolbox): New variable.
 2019-12-13 22:41:39 +01:00
Ricardo Wurmus
ca1bc50cad
gnu: Add r-rngwell. 
* gnu/packages/cran.scm (r-rngwell): New variable.
 2019-12-13 22:41:39 +01:00
Ricardo Wurmus
b441dac7af
gnu: Add r-ace2fastq. 
* gnu/packages/cran.scm (r-ace2fastq): New variable.
 2019-12-13 22:41:39 +01:00
Ricardo Wurmus
b8d52fe277
gnu: Add r-accsda. 
* gnu/packages/cran.scm (r-accsda): New variable.
 2019-12-13 22:41:39 +01:00
Ricardo Wurmus
7199d2a5fc
gnu: Add r-sparselda. 
* gnu/packages/cran.scm (r-sparselda): New variable.
 2019-12-13 22:41:39 +01:00
Ricardo Wurmus
c909b710a4
gnu: Add r-elasticnet. 
* gnu/packages/cran.scm (r-elasticnet): New variable.
 2019-12-13 22:41:39 +01:00
Ricardo Wurmus
7e2e46cbe2
gnu: Add r-mda. 
* gnu/packages/cran.scm (r-mda): New variable.
 2019-12-13 22:41:39 +01:00
Ricardo Wurmus
592d423ca5
gnu: Add r-accrued. 
* gnu/packages/cran.scm (r-accrued): New variable.
 2019-12-13 22:41:39 +01:00
Ricardo Wurmus
c5b86d3a18
gnu: Add r-accrual. 
* gnu/packages/cran.scm (r-accrual): New variable.
 2019-12-13 22:41:39 +01:00
Ricardo Wurmus
f9d9c83183
gnu: Add r-tcltk2. 
* gnu/packages/cran.scm (r-tcltk2): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
5a5431e406
gnu: Add r-fgui. 
* gnu/packages/cran.scm (r-fgui): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
bba4ec62e3
gnu: Add r-smpracticals. 
* gnu/packages/cran.scm (r-smpracticals): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
0379a16761
gnu: Add r-accept. 
* gnu/packages/cran.scm (r-accept): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
72b67e0b36
gnu: Add r-activedriverwgs. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
bd74d7e6fc
gnu: Add r-abtest. 
* gnu/packages/cran.scm (r-abtest): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
a99c4c7584
gnu: Add r-abstractr. 
* gnu/packages/cran.scm (r-abstractr): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
2ecd4e3bfd
gnu: Add r-emojifont. 
* gnu/packages/cran.scm (r-emojifont): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
d7937243ba
gnu: Add r-showtext. 
* gnu/packages/cran.scm (r-showtext): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
369e1bb6a8
gnu: Add r-showtextdb. 
* gnu/packages/cran.scm (r-showtextdb): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
322e8d8579
gnu: Add r-sysfonts. 
* gnu/packages/cran.scm (r-sysfonts): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
8990fc1584
gnu: Add r-rintrojs. 
* gnu/packages/cran.scm (r-rintrojs): New variable.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
3e33377767
gnu: Add r-abemus. 
* gnu/packages/cran.scm (r-abemus): New variable.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
ae07172c65
gnu: Add r-abcrlda. 
* gnu/packages/cran.scm (r-abcrlda): New variable.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
84822497c2
gnu: Add r-abcdefba. 
* gnu/packages/cran.scm (r-abcdefba): New variable.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
72e5c6e95f
gnu: Add r-rglpk. 
* gnu/packages/cran.scm (r-rglpk): New variable.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
647ff4a98b
gnu: Add r-abcadm. 
* gnu/packages/cran.scm (r-abcadm): New variable.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
8fed766a7d
gnu: Add r-abc-rap. 
* gnu/packages/cran.scm (r-abc-rap): New variable.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
595d950223
gnu: Add r-abacus. 
* gnu/packages/cran.scm (r-abacus): New variable.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
6e6fa954af
gnu: r-shiny: Update to 1.4.0. 
* gnu/packages/cran.scm (r-shiny): Update to 1.4.0.
[arguments]: Update list of JavaScript files to replace.
[propagated-inputs]: Add r-fastmap.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
c20a81eed1
gnu: Add r-fastmap. 
* gnu/packages/cran.scm (r-fastmap): New variable.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
303c7d1dff
gnu: Add r-aasea. 
* gnu/packages/cran.scm (r-aasea): New variable.
 2019-12-13 22:41:37 +01:00
Ricardo Wurmus
59beb0d23f
gnu: Add r-networkd3. 
* gnu/packages/cran.scm (r-networkd3): New variable.
 2019-12-13 22:41:36 +01:00
Ricardo Wurmus
db07641a67
gnu: Add r-bios2cor. 
* gnu/packages/cran.scm (r-bios2cor): New variable.
 2019-12-13 22:41:36 +01:00
Ricardo Wurmus
e44c4cd73c
gnu: Add r-bio3d. 
* gnu/packages/cran.scm (r-bio3d): New variable.
 2019-12-13 22:41:36 +01:00
Ricardo Wurmus
ba4fcea499
gnu: r-desolve: Update description. 
* gnu/packages/cran.scm (r-desolve)[description]: Use texinfo syntax.
 2019-12-13 22:41:33 +01:00
Efraim Flashner
c45fdf90a9
gnu: imlib2: Update to 1.6.1. 
* gnu/packages/image.scm (imlib2): Update to 1.6.1.
 2019-12-13 22:57:31 +02:00
Brett Gilio
e19a539388
gnu: emacs-telega: Correct path coding for ffmpeg. 
* gnu/packages/emacs-xyz.scm (emacs-telega)[arguments]: Continuation of the
  previous patch. Adds a hard-coded path from NAME `ffmpeg-bin` to work around
  issue of ffmpeg not being found on the system PATH.
 2019-12-13 12:37:15 -06:00
Leo Prikler
5f12df7ea6
gnu: emacs-telega: Patch ffplay instead of propagating. 
* gnu/packages/emacs-xyz.scm (emacs-telega) [phases]:
<telega-data-patch>: Rename to telega-paths-patch.
<telega-paths-patch>: Substitute ffplay path for patching.
[propagated-inputs] <ffmpeg>: Remove.
[inputs] <ffmpeg>: Add.

Fixes: #38590 <https://bugs.gnu.org/38590>

Signed-off-by: Brett Gilio <brettg@posteo.net>
Co-authored-by: Brett Gilio <brettg@posteo.net>
 2019-12-13 12:01:20 -06:00
Ludovic Courtès
085bdfd092
gnu: guile-next: Update to 2.9.7. 
* gnu/packages/guile.scm (guile-next): Update to 2.9.7.
 2019-12-13 18:04:04 +01:00
Ludovic Courtès
94fea21b21
gnu: hdf5@1.10: Update to 1.10.5. 
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5.  Remove
"hdf5-mpi-deprecations.patch".
* gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-12-13 18:04:04 +01:00
Brett Gilio
19ba75dc02
gnu: python-yapf: Update to 0.29.0. 
* gnu/packages/python-xyz.scm (python-yapf): Update to 0.29.0.
 2019-12-13 07:30:13 -06:00
Brett Gilio
d1efb11a0c
gnu: python-blessings: Update comment on test suite. 
* gnu/packages/terminals.scm (python-blessings): Test suite has been revised.
[arguments]: Change comment to reflect change in test suite regarding TTY.
[native-inputs]: Pass python-six, which is required for test suite.
 2019-12-13 07:06:39 -06:00
Brett Gilio
5076c13b49
gnu: python-blessings: Update to 1.7. 
* gnu/packages/terminals.scm (python-blessings): Update to 1.7.
 2019-12-13 07:06:27 -06:00
Brett Gilio
2ecbba2408
gnu: python-semver: Adjust indentation. 
* gnu/packages/python-xyz.scm (python-semver): Adjust indentation.
 2019-12-13 06:56:12 -06:00
Brett Gilio
c587482dcb
gnu: python-semver: Do not patch virtualenv for tests. 
* gnu/packages/python-xyz.scm (python-semver)[arguments]: The substitution
  case for patching virtualenv versioning is no longer requireed.
 2019-12-13 06:54:23 -06:00
Brett Gilio
594280b103
gnu: python-semver: Update to 2.9.0. 
* gnu/packages/python-xyz.scm (python-semver): Update to 2.9.0.
 2019-12-13 06:54:05 -06:00
Brett Gilio
c08dc8d593
gnu: certbot: Update to 1.0.0. 
* gnu/packages/tls.scm (certbot): Update to 1.0.0.
 2019-12-13 06:47:03 -06:00
Brett Gilio
9e6794a7f4
gnu: python-acme: Update to 1.0.0. 
* gnu/packages/tls.scm (python-acme): Update to 1.0.0.
 2019-12-13 06:46:11 -06:00
Brett Gilio
eb8aad6a23
gnu: emacs-telega: Add MP4/GIF support. 
* gnu/packages/emacs-xyz.scm (emacs-telega)[propagated-inputs]: Pass ffmpeg in
  propagated-inputs to support playback of inline MP4 and GIF files.
 2019-12-12 21:24:54 -06:00
Brett Gilio
f85c0f1878
gnu: emacs-telega: Update to 0.5.2-2. 
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.2-2. Adds support
  for I18N.
 2019-12-12 20:55:59 -06:00
Brett Gilio
7afb0b25df
gnu: emacs-telega: Modify description. 
* gnu/packages/emacs-xyz.scm (emacs-telega)[description]: Modify the
  description to be easier to read.
 2019-12-12 20:55:16 -06:00
Brett Gilio
b45af175b1
gnu: emacs-telega: Add sticker support. 
* gnu/packages/emacs-xyz.scm (emacs-telega)[propagated-inputs]: Add libwebp to
  the propagated-inputs in order to emit stickers properly.
 2019-12-12 20:51:28 -06:00
Brett Gilio
d057c52f95
gnu: emacs-telega: Update to 0.5.2. 
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.2.
 2019-12-12 18:41:17 -06:00
Christopher Baines
9705e40071
gnu: guix-data-service: Update to 0.0.1-7.156b7ee. 
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-7.156b7ee.
[arguments]: Add guix-data-service-manage-build-servers to the list of
scripts.
 2019-12-12 22:11:37 +00:00
Julien Lepiller
4d6d88bb7e
gnu: coq: Split coqide. 
* gnu/packages/coq.scm (coq)[outputs]: Add "ide" output.
 2019-12-12 20:10:18 +01:00
Guillaume Le Vaillant
55e21617d6
linux-boot: Don't ignore flags when mounting root file system. 
* gnu/build/linux-boot.scm (mount-root-file-system): Add the 'flags' keyword
  argument and use it when mounting the root file system.
  (boot-system): Pass the root file system flags to 'mount-root-file-system'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-12 17:56:33 +01:00
Tobias Geerinckx-Rice
336afa17e3
gnu: wireguard: Update to 0.0.20191212. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20191212.
 2019-12-12 14:30:24 +01:00
Tobias Geerinckx-Rice
968dd99447
gnu: iptables: Update to 1.8.4. 
* gnu/packages/linux.scm (iptables): Update to 1.8.4.
 2019-12-12 03:02:32 +01:00
Tobias Geerinckx-Rice
31e6ef0515
gnu: nftables: Update to 0.9.3. 
* gnu/packages/linux.scm (nftables): Update to 0.9.3.
 2019-12-12 03:02:32 +01:00
Tobias Geerinckx-Rice
e221e9a7bc
gnu: nftables: Prefer mirror://netfilter sources. 
* gnu/packages/linux.scm (nftables)[source]: Add a mirror:// URI.
 2019-12-12 03:02:31 +01:00
Tobias Geerinckx-Rice
79a3925355
gnu: libnftnl: Update to 1.1.5. 
* gnu/packages/linux.scm (libnftnl): Update to 1.1.5.
[source]: Add patch.
* gnu/packages/patches/libnftnl-dont-check-NFTNL_FLOWTABLE_SIZE.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-12-12 03:02:31 +01:00
Tobias Geerinckx-Rice
4a27b0f1cf
gnu: nftables: Use HTTPS for www.nftables.org. 
* gnu/packages/linux.scm (nftables)[source, home-page]: Use HTTPS.
 2019-12-12 03:02:31 +01:00
Tobias Geerinckx-Rice
2dffd9c673
gnu: fio: Download over HTTPS. 
* gnu/packages/benchmark.scm (fio)[source]: Use HTTPS.
 2019-12-12 03:02:31 +01:00
Tobias Geerinckx-Rice
00d3c3e9b8
gnu: fio: Update to 3.16. 
* gnu/packages/benchmark.scm (fio): Update to 3.16.
 2019-12-12 03:02:31 +01:00
Tobias Geerinckx-Rice
78fee44e32
gnu: muse-sequencer: Don't use NAME in source URI. 
* gnu/packages/music.scm (muse-sequencer)[source]: Hard-code NAME.
 2019-12-12 03:02:31 +01:00
Tobias Geerinckx-Rice
0b223139a8
gnu: libwpd: Update to 0.10.3. 
* gnu/packages/libreoffice.scm (libwpd): Update to 0.10.3.
 2019-12-12 03:02:31 +01:00
Tobias Geerinckx-Rice
0ba5755868
gnu: bogofilter: Use HTTPS home page. 
* gnu/packages/mail.scm (bogofilter)[home-page]: Use HTTPS.
 2019-12-12 03:02:30 +01:00
Tobias Geerinckx-Rice
2665ff41e9
gnu: bogofilter: Update to 1.2.5. 
* gnu/packages/mail.scm (bogofilter): Update to 1.2.5.
[license]: Upgrade to GPL3+.
 2019-12-12 03:02:30 +01:00
Tobias Geerinckx-Rice
8d73e6a244
gnu: graphicsmagick: Update to 1.3.33. 
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.33.
 2019-12-12 03:02:30 +01:00
Tobias Geerinckx-Rice
3190e967c6
gnu: gx: Update to 0.14.2. 
* gnu/packages/ipfs.scm (gx): Update to 0.14.2.
 2019-12-12 03:02:30 +01:00
Tobias Geerinckx-Rice
58ec1e4bb8
gnu: libcdio-paranoia: Update to 10.2+2.0.1. 
* gnu/packages/cdrom.scm (libcdio-paranoia): Update to 10.2+2.0.1.
 2019-12-12 03:02:30 +01:00
Tobias Geerinckx-Rice
e3ce8fbfd3
gnu: remind: Update to 3.1.17. 
* gnu/packages/calendar.scm (remind): Update to 3.1.17.
 2019-12-12 03:02:30 +01:00
Nicolas Goaziou
6ffb0b4f6a
gnu: Add emacs-modus-themes. 
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): New variable.
 2019-12-11 23:23:30 +01:00
Marius Bakke
27664ea0f0
gnu: Remove fmt-restinio. 
This is a follow-up to commit 71ce0b5290.

* gnu/packages/pretty-print.scm (fmt-restinio): Remove variable.
 2019-12-11 22:49:30 +01:00
Ricardo Wurmus
3158c805f0
gnu: Add emacs-quasi-monochrome. 
* gnu/packages/emacs-xyz.scm (emacs-quasi-monochrome): New variable.
 2019-12-11 22:47:41 +01:00
Marius Bakke
dbc533c168
gnu: seabios: Update to 1.13.0. 
* gnu/packages/firmware.scm (seabios): Update to 1.13.0.
[native-inputs]: Change from PYTHON-2 to PYTHON-WRAPPER.
 2019-12-11 22:28:22 +01:00
Marius Bakke
71ce0b5290
gnu: fmt: Build shared library instead of static. 
* gnu/packages/pretty-print.scm (fmt)[arguments]: New field.
* gnu/packages/networking.scm (fmt-restinio): Remove variable.
(restinio)[propagated-inputs]: Change from FMT-RESTINIO to FMT.
(opendht)[inputs]: Likewise.
 2019-12-11 22:28:22 +01:00
Marius Bakke
2ecb5e7901
gnu: libssh: Update to 0.9.3 [fixes CVE-2019-14889]. 
* gnu/packages/ssh.scm (libssh): Update to 0.9.3.
[arguments]: Remove #:phases.
 2019-12-11 22:28:22 +01:00
Marius Bakke
0222de2c65
gnu: libgit2: Update to 0.28.4 [security fixes]. 
This fixes CVE-2019-1348, CVE-2019-1349, CVE-2019-1350, CVE-2019-1351,
CVE-2019-1352, CVE-2019-1353, CVE-2019-1354, and CVE-2019-1387.

* gnu/packages/version-control.scm (libgit2): Update to 0.28.4.
 2019-12-11 22:28:21 +01:00
Marius Bakke
29256cbef3
gnu: speex: Do not build static libraries. 
* gnu/packages/xiph.scm (speex)[arguments]: New field.
 2019-12-11 22:28:21 +01:00
Marius Bakke
1e667df433
gnu: libvpx: Do not build static libraries. 
* gnu/packages/video.scm (libvpx)[arguments]: Add "--disable-static" to
  #:configure-flags.
 2019-12-11 22:28:21 +01:00
Ricardo Wurmus
1f3a2ebd6a
gnu: Add emacs-almost-mono-themes. 
* gnu/packages/emacs-xyz.scm (emacs-almost-mono-themes): New variable.
 2019-12-11 21:59:00 +01:00
Alex Griffin
b0945d6944
gnu: netcat-openbsd: Update to 1.206-1. 
* gnu/packages/admin.scm (netcat-openbsd): Update to 1.206-1.
 2019-12-11 13:38:15 -06:00
Leo Prikler
997153a132
gnu: gnome-shell-extension-dash-to-dock: Update to 66. 
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-dash-to-dock):
Update to 66.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-12-11 18:05:18 +02:00
Ricardo Wurmus
98aecd3a5e
gnu: python-argcomplete: Update to 1.10.3. 
Co-authored-by: pimi <madalinionel.patrascu@mdc-berlin.de>

* gnu/packages/python-xyz.scm (python-argcomplete): Update to 1.10.3.
[arguments]: Patch completion script to keep tool references.
[inputs]: Add "grep" and "which".
[native-inputs]: Add "python-coverage", "python-flake8", "python-wheel", and
"fish".
 2019-12-11 15:50:00 +01:00
Ricardo Wurmus
b47e083b59
gnu: vpnc-scripts: Use WRAP-SCRIPT. 
* gnu/packages/vpn.scm (vpnc-scripts)[arguments]: Use WRAP-SCRIPT instead of
WRAP-PROGRAM.
[inputs]: Add guile.
 2019-12-11 15:50:00 +01:00
Diego Nicola Barbato
1e2640baac
gnu: qemu: Build with vde2 support. 
* gnu/packages/virtualization.scm (qemu)[inputs]: Add vde2.
* gnu/packages/virtualization.scm (qemu-minimal)[inputs]: Remove vde2 from
  inherited inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-11 12:13:03 +01:00
Diego Nicola Barbato
a0993c29da
gnu: Add vde2. 
* gnu/packages/networking.scm (vde2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-11 12:13:03 +01:00
Nicolò Balzarotti
6c3021a840
gnu: Add r-lintr. 
* gnu/packages/cran.scm (r-lintr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-11 12:10:15 +01:00
Nicolò Balzarotti
bd538a031e
gnu: Add r-cyclocomp. 
* gnu/packages/cran.scm (r-cyclocomp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-11 12:08:19 +01:00
Nicolò Balzarotti
f00da07471
gnu: Add r-xmlparsedata. 
* gnu/packages/cran.scm (r-xmlparsedata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-11 12:06:41 +01:00
Nicolò Balzarotti
5d387030e8
gnu: Add r-statcheck. 
* gnu/packages/cran.scm (r-statcheck): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-11 12:06:41 +01:00
Hartmut Goebel
e87b83b62c
gnu: Deprecate kdevplatform package. 
* gnu/packages/kde.scm (kdevplatform): Define as a deprecated alias
  for 'kdevelop`.
 2019-12-11 11:52:51 +01:00
Hartmut Goebel
6e23bee634
gnu: kdevelop: Update to 5.4.5. 
* gnu/packages/kde.scm(kdevelop): Update to 5.4.5, use qt-build-sytem.
  [native-inputs]: Move shared-mime-info from …
  [inputs] … here; Remove kconfig, kdevplatform, libepoxy; Add apr, apr-util,
  astyle, attica, boost, kconfigwidgets, kservice, libkomparediff2,
  oxygen-icons, qtquickcontrols2, sonnet, subversion; structure and sort list
  of inputs.
  [arguments] Disable tests.  <phases>: Base on phases from qt-build-system.
  {wrap-executable}: Remove.  {add-include-path}: New phase.  {check} Keep it..
 2019-12-11 11:52:50 +01:00
Hartmut Goebel
498abd9534
gnu: kdevelop-pg-qt: Update to 2.2.0. 
* gnu/packages/kde.scm(kdevelop-pg-qt): Update to 2.2.0.
 2019-12-11 11:52:50 +01:00
Mark H Weaver
04b33ce205
gnu: nss: Fix CVE-2019-11745 via graft. 
* gnu/packages/patches/nss-CVE-2019-11745.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/nss.scm (nss/fixed): New variable.
(nss)[replacement]: Add field.
 2019-12-11 01:52:10 -05:00
nixo
bc587eb178
gnu: enchive: Update to 3.5. 
* gnu/packages/crypto.scm (enchive): Update to 3.5.
[source]: Replace url-fetch with git-fetch.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-12-11 04:51:57 +02:00
Andrew Miloradovsky
27f8d98f8e
gnu: libraft: Update to 0.9.11. 
* gnu/packages/cluster.scm (libraft): Update to 0.9.11.
[arguments]: Enable libuv I/O backend. Add phase to skip some tests.
[inputs]: Add libuv.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-12-11 04:47:04 +02:00
Marius Bakke
615d8c8974
gnu: xf86-video-intel: Update to 2.99.917-15.f66d395. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-15.f66d395.
 2019-12-11 01:13:25 +01:00
Marius Bakke
4b96b90ae1
gnu: Remove duplicate copyright line. 
* gnu/packages/kde.scm: Remove duplicate copyright.
 2019-12-11 01:13:24 +01:00
Marius Bakke
3d1bb6a729
gnu: strace: Update to 5.4. 
* gnu/packages/linux.scm (strace): Update to 5.4.
 2019-12-11 01:13:24 +01:00
Marius Bakke
3f64bc32b0
gnu: shadow: Update to 4.8. 
* gnu/packages/admin.scm (shadow): Update to 4.8.
 2019-12-11 01:13:24 +01:00
Marius Bakke
b7ea10d090
gnu: OpenAL: Update home page. 
* gnu/packages/audio.scm (openal)[source, home-page]: Use HTTPS.
 2019-12-11 01:13:24 +01:00
Marius Bakke
69290fd034
gnu: OpenAL: Update to 1.20.0. 
* gnu/packages/audio.scm (openal): Update to 1.20.0.
[arguments]: Adjust for renamed files.
[native-inputs]: Remove.
 2019-12-11 01:13:24 +01:00
Marius Bakke
818b956b42
gnu: re2: Update to 2019-12-01. 
* gnu/packages/regex.scm (re2): Update to 2019-12-01.
 2019-12-11 01:13:24 +01:00
Marius Bakke
fd69abdef2
gnu: dav1d: Update to 0.5.2. 
* gnu/packages/video.scm (dav1d): Update to 0.5.2.
 2019-12-11 01:13:24 +01:00
Marius Bakke
1debba19db
gnu: frei0r-plugins: Update to 1.7.0. 
* gnu/packages/video.scm (frei0r-plugins): Update to 1.7.0.
[native-inputs]: Remove LIBTOOL, AUTOCONF and AUTOMAKE.
[arguments]: Remove 'autotools' phase.  Add 'patch-Makefile' phase.
 2019-12-11 01:13:23 +01:00
Marius Bakke
9ae87870bf
gnu: libsoup: Update to 2.68.3. 
* gnu/packages/gnome.scm (libsoup): Update to 2.68.3.
 2019-12-11 01:13:23 +01:00
Marius Bakke
7809ddc287
gnu: elogind: Update to 241.4. 
* gnu/packages/freedesktop.scm (elogind): Update to 241.4.
 2019-12-11 01:13:23 +01:00
Mark H Weaver
296ac36782
gnu: git: Update to 2.24.1 [security fixes]. 
Includes fixes for CVE-2019-1348, CVE-2019-1349, CVE-2019-1350,
CVE-2019-1351, CVE-2019-1352, CVE-2019-1353, CVE-2019-1354,
CVE-2019-1387, and CVE-2019-19604.

* gnu/packages/version-control.scm (git): Update to 2.24.1.
[native-inputs]: Update git-manpages accordingly.
 2019-12-10 15:44:41 -05:00
Mark H Weaver
d7f1481de0
gnu: cgit: Update git-source to 2.18.2 [security-fixes]. 
Includes fixes for CVE-2019-1348, CVE-2019-1349, CVE-2019-1350,
CVE-2019-1351, CVE-2019-1352, CVE-2019-1353, CVE-2019-1354,
and CVE-2019-1387

* gnu/packages/version-control.scm (cgit)[inputs]: Update git-source
to 2.18.2.
 2019-12-10 15:44:34 -05:00
Reza Alizadeh Majd
fc81316384
gnu: qps: Update to 2.0.0. 
* gnu/packages/lxqt.scm (qps): Update to 2.0.0.

Signed-off-by: Brett Gilio <brettg@posteo.net>
 2019-12-10 12:52:17 -06:00
Ricardo Wurmus
343f5efbc3
gnu: gajim: Fix search for translations. 
Fixes <https://bugs.gnu.org/38558>.

* gnu/packages/messaging.scm (gajim)[arguments]: Wrap executables in
XDG_DATA_DIRS.
 2019-12-10 17:30:46 +01:00
Hartmut Goebel
95563d628a
gnu: Add kjumpingcube. 
* gnu/packages/games.scm (kjumpingcube): New variable.
 2019-12-10 17:28:47 +01:00
Hartmut Goebel
4fe7423812
gnu: Add ksquares. 
* gnu/packages/games.scm (ksquares): New variable.
 2019-12-10 17:28:47 +01:00
Hartmut Goebel
a605b25b33
gnu: Add kreversi. 
* gnu/packages/games.scm (kreversi): New variable.
 2019-12-10 17:28:47 +01:00
Hartmut Goebel
4e75911011
gnu: Add knavalbattle. 
* gnu/packages/games.scm (knavalbattle): New variable.
 2019-12-10 17:28:46 +01:00
Hartmut Goebel
f114a689e7
gnu: Add kollision. 
* gnu/packages/games.scm (kollision): New variable.
 2019-12-10 17:28:46 +01:00
Hartmut Goebel
f2f0ef92f7
gnu: Add ksnakeduel. 
* gnu/packages/games.scm (ksnakeduel): New variable.
 2019-12-10 17:28:46 +01:00
Hartmut Goebel
2fbf14e1d0
gnu: Add killbots. 
* gnu/packages/games.scm (killbots): New variable.
 2019-12-10 17:28:46 +01:00
Hartmut Goebel
37ea126da9
gnu: Add bovo. 
* gnu/packages/games.scm (bovo): New variable.
 2019-12-10 17:28:46 +01:00