Ricardo Wurmus
0b5088a2a3
gnu: Add python-genomepy.
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* gnu/packages/bioinformatics.scm (python-genomepy): New variable.
2023-05-05 15:39:29 +02:00
Ricardo Wurmus
5eac2bbb71
gnu: Add python-filelock-3.5.
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* gnu/packages/python-xyz.scm (python-filelock-3.5): New variable.
2023-05-05 15:39:29 +02:00
Ricardo Wurmus
181714e5f8
gnu: Add python-logomaker.
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* gnu/packages/bioinformatics.scm (python-logomaker): New variable.
2023-05-05 15:39:29 +02:00
Ricardo Wurmus
f41c9409f2
gnu: Add python-mysql-connector-python.
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* gnu/packages/python-xyz.scm (python-mysql-connector-python): New variable.
2023-05-05 15:39:28 +02:00
Ricardo Wurmus
484b843c2e
gnu: Add protobuf-3.20.
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* gnu/packages/protobuf.scm (protobuf-3.20): New variable.
2023-05-05 15:39:28 +02:00
Ricardo Wurmus
99627b86c8
gnu: Add python-palettable.
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* gnu/packages/python-xyz.scm (python-palettable): New variable.
2023-05-05 15:39:28 +02:00
Ricardo Wurmus
7dc853269f
gnu: python-pyfaidx: Update to 0.7.2.1.
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* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.7.2.1.
[build-system]: Use pyproject-build-system.
[arguments]: Ignore tests that require large downloads.
[native-inputs]: Remove python-six; add python-fsspec, python-pytest,
python-pytest-cov, python-mock, and python-numpy.
2023-05-05 15:39:28 +02:00
Florian Pelz
3efdc84bbd
news: Add 'de' translation.
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* etc/news.scm: Add German translation of 'with-configure-flag' entry.
2023-05-05 10:20:55 +02:00
Lars-Dominik Braun
cf44fb964e
gnu: python-sanic: Disable failing SSL tests.
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Best guess is that they check for broken behavior in one of the
dependencies, which has changed.
* gnu/packages/python-web.scm (python-sanic)[arguments]: Disable more
tests.
2023-05-05 09:17:49 +02:00
Lars-Dominik Braun
4e6cf8e624
gnu: python-gssapi: Update to 1.8.2.
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* gnu/packages/python-xyz.scm (python-gssapi): Update to 1.8.2.
[native-inputs]: Add python-cython.
2023-05-05 09:17:07 +02:00
Lars-Dominik Braun
65dbd10626
gnu: python-k5test: Update to 0.10.3.
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* gnu/packages/python-xyz.scm (python-k5test): Update to 0.10.3.
2023-05-05 09:16:34 +02:00
Lars-Dominik Braun
5d38269aca
gnu: python-atpublic: Update to 3.1.1.
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* gnu/packages/python-check.scm (python-atpublic): Update to 3.1.1.
[build-system]: Switch to pyproject-build-system.
[arguments]: Remove #:phases, override build backend.
[native-inputs]: Replace nose2 with pytest, add python-pdm-backend,
python-sybil and python-pytest-cov.
2023-05-05 09:14:30 +02:00
Lars-Dominik Braun
d1e4803474
gnu: Add python-pdm-backend.
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* gnu/packages/python-build.scm (python-pdm-backend): New variable.
2023-05-05 09:13:57 +02:00
Ludovic Courtès
3c91f4ca49
gnu: guix: Update to dc5430c.
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* gnu/packages/package-management.scm (guix): Update to dc5430c
2023-05-05 00:13:51 +02:00
Ludovic Courtès
dc5430c9dc
gnu: python-fs: Remove indirect dependency on Rust when unsupported.
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This allows to build font-abattis-cantarell on aarch64-linux.
* gnu/packages/python-xyz.scm (python-fs)[arguments]: Add #:tests?.
[native-inputs]: Turn into the empty list when cross-compiling or when
PYTHON-PYFTPDLIB is not supported.
2023-05-04 23:14:21 +02:00
Ludovic Courtès
9e95be01d9
gnu: psautohint: Remove unneeded dependencies.
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* gnu/packages/fontutils.scm (psautohint)[native-inputs]: Remove
PYTHON-FS and PYTHON-PYTEST-RANDOMLY.
2023-05-04 23:14:21 +02:00
Efraim Flashner
0584f5b489
services: qemu-binfmt: Add more targets.
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* gnu/services/virtualization.scm (%i486, %sparc64, %aarch64be, %xtensa,
%xtensaeb, %microblaze, %microblazeel, %or1k, %hexagon, %loongson64):
New variables.
(%armeb): Correct family field.
(%qemu-platforms): Add them.
2023-05-04 22:28:56 +03:00
Efraim Flashner
f66344ed81
services: earlyoom: Rotate log files.
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* gnu/services/linux.scm (%earlyoom-log-rotation): New variable.
(earlyoom-service-type): Add service-extension for log rotation.
2023-05-04 21:32:32 +03:00
Efraim Flashner
df18eac9ab
gnu: vifm: Update to 0.13.
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* gnu/packages/vim.scm (vifm): Update to 0.13.
[arguments]: Adjust substitutions in custom 'patch-test-shebangs phase.
2023-05-04 21:32:32 +03:00
Mădălin Ionel Patrașcu
00051e8839
gnu: python-screed: Update to 1.1.2.
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* gnu/packages/bioinformatics.scm (python-screed): Update to 1.1.2.
[build-system]: Use pyproject-build-system.
[native-inputs]: Remove python-pytest.
[inputs]: Remove python-bz2file.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-05-04 19:28:23 +02:00
Navid Afkhami
5daf470e4f
gnu: Add python-goatools.
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* gnu/packages/bioinformatics.scm (python-goatools): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-05-04 19:22:04 +02:00
Navid Afkhami
040cf2df74
gnu: Add r-rcircos.
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* gnu/packages/cran.scm (r-rcircos): New variable.
2023-05-04 19:22:04 +02:00
Ludovic Courtès
5aa1f3aa4a
build: Do not fail when '.git' is missing.
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This is a followup to a5d719012e
2023-05-04 18:51:20 +02:00
Ricardo Wurmus
d0a6c11079
gnu: Add python-diff-cover.
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* gnu/packages/python-xyz.scm (python-diff-cover): New variable.
2023-05-04 18:47:17 +02:00
Ricardo Wurmus
155137d28a
gnu: Add python-loguru.
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* gnu/packages/python-xyz.scm (python-loguru): New variable.
2023-05-04 18:47:17 +02:00
Ricardo Wurmus
f234cda89a
gnu: Add python-pytest-mypy-plugins.
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* gnu/packages/check.scm (python-pytest-mypy-plugins): New variable.
2023-05-04 18:47:17 +02:00
Ricardo Wurmus
d60b77ee5d
gnu: Add python-chevron.
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* gnu/packages/python-xyz.scm (python-chevron): New variable.
2023-05-04 18:47:17 +02:00
Ricardo Wurmus
66993edc17
gnu: Add python-iteround.
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* gnu/packages/python-xyz.scm (python-iteround): New variable.
2023-05-04 18:47:17 +02:00
Ludovic Courtès
a5d719012e
build: Do not fail when 'git' is missing.
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This is a followup to 8b972da068
2023-05-04 18:43:28 +02:00
Guillaume Le Vaillant
f14d3944cc
gnu: airspyhf: Update to 1.6.8-1.40836c5.
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* gnu/packages/radio.scm (airspyhf): Update to 1.6.8-1.40836c5.
2023-05-04 17:30:22 +02:00
Leo Famulari
6fad6aa1e3
gnu: linux-libre 5.15: Update to 5.15.110.
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* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.110.
(linux-libre-5.15-pristine-source): Update hash.
2023-05-04 11:18:46 -04:00
Leo Famulari
5b7b987534
gnu: linux-libre 6.1: Update to 6.1.27.
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* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.27.
(linux-libre-6.1-pristine-source): Update hash.
2023-05-04 11:18:45 -04:00
Leo Famulari
aa154a0f36
gnu: linux-libre: Update to 6.2.14.
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* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.14.
(linux-libre-6.2-pristine-source): Update hash.
2023-05-04 11:18:38 -04:00
Ludovic Courtès
388cf3066e
news: Add entry for '--with-configure-flag'.
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* etc/news.scm: Add entry.
2023-05-04 17:07:15 +02:00
Sarthak Shah
ae11fcb84a
transformations: Add '--with-configure-flag'.
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* guix/transformations.scm (transform-package-configure-flag): New
procedure.
(%transformation-options, %transformation-options)
(show-transformation-options-help/detailed): Add it.
* tests/transformations.scm ("options->transformation,
with-configure-flag"): New test.
* doc/guix.texi (Package Transformation Options): Document it.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-05-04 17:06:44 +02:00
Ludovic Courtès
b20b7e61a3
gnu: sakura: Remove input labels.
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* gnu/packages/terminals.scm (sakura)[native-inputs]: Remove input
labels.
2023-05-04 17:06:44 +02:00
Ludovic Courtès
115f0ad729
gnu: peek: Remove input labels.
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* gnu/packages/video.scm (peek)[inputs, native-inputs]: Remove labels.
2023-05-04 17:06:44 +02:00
Ludovic Courtès
9c004c4d8a
gnu: tint2: Remove input labels.
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* gnu/packages/xdisorg.scm (tint2)[native-inputs]: Remove input labels.
2023-05-04 17:06:44 +02:00
Ludovic Courtès
919ade23d0
gnu: maim: Remove input labels.
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* gnu/packages/xdisorg.scm (maim)[inputs]: Remove labels.
2023-05-04 17:06:44 +02:00
Ludovic Courtès
a860dcbba9
gnu: armadillo: Remove input labels.
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* gnu/packages/maths.scm (armadillo)[inputs]: Remove labels.
2023-05-04 17:06:43 +02:00
Ludovic Courtès
68fa28b3c3
style: Make 'safe' policy less conservative.
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Previously, a mere (arguments '(#:tests? #f)) would lead
guix style -S inputs --input-simplification=safe
to bail out. It now recognizes such trivial argument lists and
proceeds.
* guix/scripts/style.scm (trivial-package-arguments?): New procedure.
(simplify-package-inputs): Use it in the 'safe case instead of 'null?'.
* tests/style.scm ("input labels, 'safe' policy, trivial arguments"):
New test.
2023-05-04 17:06:43 +02:00
Efraim Flashner
f0a51a2bda
gnu: vulkan-loader: Skip tests on riscv64-linux.
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* gnu/packages/vulkan.scm (vulkan-loader)[arguments]: Skip tests when
building on riscv64-linux.
2023-05-04 16:54:09 +03:00
Efraim Flashner
f776eb3f87
gnu: exiv2: Adjust tests on riscv64-linux.
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* gnu/packages/image.scm (exiv2)[arguments]: Also use the custom
'adjust-tests phase when building for riscv64-linux.
2023-05-04 16:54:03 +03:00
Christopher Baines
f56d37658e
gnu: r-bigmemory: Remove several supported systems.
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Where the package consistently fails to build.
* gnu/packages/statistics.scm (r-bigmemory)[supported-systems]: Remove
armhf-linux, aarch64-linux and powerpc64le-linux.
2023-05-04 14:50:47 +01:00
Christopher Baines
08acdd0765
gnu: gcc-11: Adapt patching for hurd to not use gexp's.
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As this causes issues with gcc-cross-boot0, since it doesn't use gexp's and
that means the builder script ends up broken.
I'm not testing this properly, I've only confirmed that with this change, you
can generate a derivation for hello for i586-gnu where that derivation and all
inputs don't have broken builder scripts. Plus the output for hello on
x86_64-linux is unchanged.
* gnu/packages/gcc.scm (gcc-11)[arguments]: Rewrite to not use gexps.
[native-inputs]: Add a patch for the hurd if that's the target.
2023-05-04 14:43:53 +01:00
Ludovic Courtès
916c6e5716
profiles: 'texlive-font-maps' gracefully handles lack of texlive inputs.
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Fixes <https://issues.guix.gnu.org/63043 >.
* guix/profiles.scm (texlive-font-maps): Define 'texlive-inputs'.
[build]: Use it.
Return #f when TEXLIVE-INPUTS is empty.
2023-05-04 13:09:00 +02:00
Ludovic Courtès
25f04945d9
import: elpa: Standardize warning message.
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* guix/import/elpa.scm (melpa-recipe->origin): Standardize warning
message.
2023-05-04 13:09:00 +02:00
Ludovic Courtès
124b921a5e
import: Cosmetic tweaks to 'recursive-import'.
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* guix/import/utils.scm (recursive-import): Tweak docstring. Simplify
'apply' call.
2023-05-04 13:09:00 +02:00
Ludovic Courtès
39eb9b5a5c
import: elpa: Use the expected repo in recursive imports.
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* guix/import/elpa.scm (elpa-recursive-import): Pass REPO in calls to
'elpa->guix-package'.
2023-05-04 13:09:00 +02:00
Ludovic Courtès
8e065692c2
import: elpa: 'elpa->guix-package' accepts other keyword arguments.
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This is a followup to 3c24da4260
2023-05-04 13:09:00 +02:00
