Efraim Flashner
1a069a170c
Revert "gnu: Add vcflib."
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This reverts commit 194e45f90a
2019-08-08 15:34:05 +03:00
Efraim Flashner
6bc63fd8a7
Revert "gnu: Add freebayes."
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This reverts commit 173e046950
2019-08-08 15:32:51 +03:00
Pierre Neidhardt
173e046950
gnu: Add freebayes.
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* gnu/packages/bioinformatics.scm (freebayes): New variable.
2019-08-08 15:18:34 +03:00
Pierre Neidhardt
194e45f90a
gnu: Add vcflib.
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* gnu/packages/bioinformatics.scm (vcflib): New variable.
2019-08-08 15:18:33 +03:00
Pierre Neidhardt
7d71557d4d
gnu: Add fastahack.
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* gnu/packages/bioinformatics.scm (fastahack): New variable.
2019-08-08 15:18:32 +03:00
Pierre Neidhardt
70782dddff
gnu: Add fsom.
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* gnu/packages/bioinformatics.scm (fsom): New variable.
2019-08-08 15:18:31 +03:00
Pierre Neidhardt
8cd51276e5
gnu: Add multichoose.
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* gnu/packages/bioinformatics.scm (multichoose): New variable.
2019-08-08 15:18:30 +03:00
Pierre Neidhardt
7faa70cf2b
gnu: Add smithwaterman.
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* gnu/packages/bioinformatics.scm (smithwaterman): New variable.
2019-08-08 15:18:29 +03:00
Pierre Neidhardt
62a031afc4
gnu: Add tabixpp.
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* gnu/packages/bioinformatics.scm (tabixpp): New variable.
2019-08-08 15:18:14 +03:00
Efraim Flashner
8378c87a59
gnu: Add network-manager-openconnect.
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* gnu/packages/gnome.scm (network-manager-openconnect): New variable.
2019-08-08 10:08:00 +03:00
Robert Vollmert
caa366ec23
gnu: ghc-trifecta: Disable tests.
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* gnu/packages/haskell.scm (ghc-trifecta)[arguments]: Disable tests.
2019-08-07 22:05:34 -04:00
Robert Vollmert
dbfaac113a
gnu: ghc-yaml: Disable tests.
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* gnu/packages/haskell.scm (ghc-yaml)[arguments]: Disable tests.
2019-08-07 22:05:34 -04:00
Robert Vollmert
9ec2d6f84c
gnu: ghc-libmpd-haskell: Disable tests.
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* gnu/packages/haskell.scm (ghc-libmpd-haskell)[arguments]: Disable
tests.
2019-08-07 22:05:33 -04:00
Robert Vollmert
3755088b54
gnu: Remove ghc-packedstring.
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The package has no reverse dependencies and is deprecated upstream.
* gnu/packages/haskell.scm (ghc-packedstring): Remove variable.
2019-08-07 22:05:33 -04:00
Robert Vollmert
63edeca773
gnu: Remove ghc-haddock-test.
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The package doesn't build, has no reverse dependencies, and is
deprecated upstream.
* gnu/packages/haskell.scm (ghc-haddock-test): Remove variable.
2019-08-07 22:05:33 -04:00
Robert Vollmert
0d59302eba
gnu: Remove ghc-regex-tdfa-rc.
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The package doesn't build, has no reverse dependencies, and is deprecated
upstream.
* gnu/packages/haskell.scm (ghc-regex-tdfa-rc): Remove variable.
2019-08-07 22:05:33 -04:00
Robert Vollmert
8ede1021c8
gnu: Add ghc-snap-server.
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* gnu/packages/haskell-web.scm (ghc-snap-server): New variable.
2019-08-07 22:05:33 -04:00
Robert Vollmert
4f1793a2be
gnu: Add ghc-snap-core.
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* gnu/packages/haskell-web.scm (ghc-snap-core): New variable.
2019-08-07 22:05:32 -04:00
Robert Vollmert
4ccd679f25
gnu: Add ghc-http-streams.
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* gnu/packages/haskell-web.scm (ghc-http-streams): New variable.
2019-08-07 22:05:32 -04:00
Robert Vollmert
0173cdd31d
gnu: Add ghc-http-common.
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* gnu/packages/haskell-web.scm (ghc-http-common): New variable.
2019-08-07 22:05:32 -04:00
Robert Vollmert
4ba66e6f16
gnu: Add ghc-openssl-streams.
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* gnu/packages/haskell-crypto.scm (ghc-openssl-streams): New variable.
2019-08-07 22:05:32 -04:00
Robert Vollmert
0925b80409
gnu: Add ghc-hsopenssl.
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* gnu/packages/haskell-crypto.scm (ghc-hsopenssl): New variable.
2019-08-07 22:05:32 -04:00
Robert Vollmert
7b01a977e4
gnu: Add ghc-io-streams-haproxy.
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* gnu/packages/haskell-xyz.scm (ghc-io-streams-haproxy): New variable.
2019-08-07 22:05:32 -04:00
Robert Vollmert
658dbc7ff2
gnu: Add ghc-io-streams.
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* gnu/packages/haskell-xyz.scm (ghc-io-streams): New variable.
2019-08-07 22:05:31 -04:00
Robert Vollmert
14e4199646
gnu: Add ghc-zlib-bindings.
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* gnu/packages/haskell-xyz.scm (ghc-zlib-bindings): New variable.
2019-08-07 22:05:31 -04:00
Robert Vollmert
bbf8bf31e4
gnu: Add ghc-threads.
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* gnu/packages/haskell-xyz.scm (ghc-threads): New variable.
2019-08-07 22:05:31 -04:00
Robert Vollmert
b57e99f574
gnu: Add ghc-readable.
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* gnu/packages/haskell-xyz.scm (ghc-readable): New variable.
2019-08-07 22:05:31 -04:00
Robert Vollmert
efb96749a2
gnu: Add ghc-concurrent-extra.
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* gnu/packages/haskell-xyz.scm (ghc-concurrent-extra): New variable.
2019-08-07 22:05:31 -04:00
Robert Vollmert
79fcc5e59b
gnu: Add ghc-language-glsl.
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* gnu/packages/haskell-xyz.scm (ghc-language-glsl): New variable.
2019-08-07 22:05:30 -04:00
Robert Vollmert
6b34d01cbf
gnu: Add ghc-prettyclass.
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* gnu/package/haskell-xyz.scm: New file.
* gnu/local.mk: Add it.
* gnu/packages/haskell-xyz.scm (ghc-prettyclass): New variable.
2019-08-07 22:05:30 -04:00
Robert Vollmert
91732735f6
gnu: ghc-ansi-terminal: Downgrade to 0.8.0.4.
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This reverts commits
cbff89d1265a499d0f7d4e3ebbfb16
2019-08-07 22:05:30 -04:00
Robert Vollmert
e8aea9018b
gnu: ghc-validation: Downgrade to 1.
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This is the Stackage LTS version, which is compatible with
ansi-terminal 0.8.
* gnu/packages/haskell.scm (ghc-validation): Downgrade to 1.
2019-08-07 22:05:30 -04:00
Robert Vollmert
f74aa98ed7
gnu: ghc-concurrent-output: Downgrade to 1.10.9.
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This is the Stackage LTS version, which is compatible with
ansi-terminal 0.8.
* gnu/packages/haskell.scm (ghc-concurrent-output): Downgrade to 1.10.9
and use ghc-ansi-terminal-0.8.
2019-08-07 22:05:30 -04:00
Robert Vollmert
1c54c30d9c
gnu: ghc-validation: Do not generate 'Setup.hs'.
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This is handled by the build system.
* gnu/packages/haskell.scm (ghc-validation): Remove 'arguments'.
2019-08-07 22:05:30 -04:00
Robert Vollmert
a1eb8be8ca
gnu: Remove ghc-parsec, ghc-stm, ghc-text, ghc-xhtml.
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These are ghc-8.4-bundled packages, removing to avoid build
conflicts.
* gnu/packages/haskell.scm (ghc-parsec, ghc-stm, ghc-text): Remove.
* gnu/packages/haskell-web.scm (ghc-xhtml): Remove.
* gnu/packages/agda.scm (agda)[inputs]: Remove ghc-stm and ghc-text.
* gnu/packages/bioinformatics.scm (ngless)[inputs]: Remove ghc-parsec and
ghc-text.
* gnu/packages/haskell-apps.scm (darcs)[inputs]: Remove ghc-parsec.
(git-annex)[inputs]: Remove ghc-stm and ghc-text.
(ghc-sdl2)[inputs]: Remove ghc-text.
(ghc-sdl2-image)[inputs]: Remove ghc-text.
* gnu/packages/haskell-check.scm (ghc-tasty-ant-xml)[inputs]: Remove ghc-stm.
(ghc-tasty)[inputs]: Remove ghc-stm.
(ghc-tasty-rerun)[inputs]: Same.
(ghc-quickcheck-instances)[inputs]: Remove ghc-text.
(ghc-hedgehog)[inputs]: Remove ghc-stm.
* gnu/packages/haskell-crypto.scm (ghc-asn1-encoding)[inputs]: Remove
ghc-text.
* gnu/packages/haskell-web.scm (ghc-tagsoup)[inputs]: Remove ghc-text.
(ghc-cookie)[inputs]: Same.
(ghc-http-types)[inputs]: Same.
(ghc-http)[inputs]: Remove ghc-parsec.
(ghc-http-client)[inputs]: Remove ghc-text.
(ghc-http2)[inputs]: Remove ghc-stm.
(ghc-http-conduit)[native-inputs]: Remove ghc-text.
(ghc-wai)[inputs]: Same.
(ghc-wai-extra)[inputs]: Same.
(ghc-warp)[inputs]: Remove ghc-stm and ghc-text.
(ghc-xss-sanitize)[native-inputs]: Remove ghc-text.
(ghc-css-text)[inputs]: Same.
(ghc-mime-types)[inputs]: Same.
(ghc-blaze-html)[inputs]: Same.
(ghc-aeson)[inputs]: Same.
(ghc-aeson-pretty)[inputs]: Same.
(ghc-aeson-qq)[inputs]: Remove ghc-text and ghc-parsec.
(ghc-multipart)[inputs]: Remove ghc-parsec.
(ghc-uri-encode)[inputs]: Remove ghc-text.
(ghc-path-pieces)[inputs]: Same.
(ghc-yesod-core)[inputs]: Remove ghc-text and ghc-parsec.
(ghc-yesod-persistent)[inputs]: Remove ghc-text.
(ghc-yesod-form)[inputs]: Same.
(ghc-yesod)[inputs]: Same.
(ghc-hxt-regex-xmlschema)[inputs]: Remove ghc-parsec and ghc-text.
(ghc-hxt)[inputs]: Remove ghc-parsec.
* gnu/packages/haskell.scm (ghc-convertible)[inputs]: Remove ghc-text.
(ghc-double-conversion)[inputs]: Same.
(ghc-tree-diff)[inputs]: Remove ghc-parsec and ghc-text.
[native-inputs]: Remove ghc-parsec.
(ghc-cgi)[inputs]: Remove ghc-parsec.
(hlint)[inputs]: Remove ghc-text.
(ghc-openglraw)[inputs]: Remove ghc-text.
(ghc-opengl)[inputs]: Same.
(ghc-streaming-commons)[inputs]: Remove ghc-stm and ghc-text.
(ghc-hackage-security)[inputs]: Remove ghc-parsec.
(cabal-install)[inputs]: Remove ghc-stm.
(ghc-parsec-numbers)[inputs]: Remove ghc-parsec.
(ghc-safesemaphore)[inputs]: Remove ghc-stm.
(ghc-text-binary)[inputs]: Remove ghc-text.
(ghc-hashable)[inputs]: Remove ghc-text.
(ghc-transformers-base)[inputs]: Remove ghc-stm.
(ghc-indents)[inputs]: Remove ghc-parsec.
(ghc-regex-tdfa-rc)[inputs]: Same.
(ghc-regex-tdfa-text)[inputs]: Same.
(ghc-regex)[inputs]: Remove ghc-text.
(ghc-parsers)[inputs]: Remove ghc-parsec and ghc-text.
(ghc-attoparsec)[inputs]: Remove ghc-text.
(ghc-attoparsec-bootstrap)[inputs]: Same.
(ghc-zip-archive)[inputs]: Same.
(ghc-polyparse)[inputs]: Same.
(ghc-reducers)[inputs]: Same.
(ghc-xml)[inputs]: Same.
(ghc-feed)[inputs]: Same.
(ghc-exceptions)[inputs]: Remove ghc-stm.
(ghc-case-insensitive)[inputs]: Remove ghc-text.
(ghc-megaparsec)[inputs]: Same.
(ghc-network-uri)[inputs]: Remove ghc-parsec.
(ghc-monad-control)[inputs]: Remove ghc-stm.
(ghc-blaze-builder)[inputs]: Remove ghc-text.
(ghc-blaze-markup)[inputs]: Same.
(ghc-async)[inputs]: Remove ghc-stm.
(ghc-invariant)[inputs]: Same.
(ghc-statevar)[inputs]: Same.
(ghc-lens)[inputs]: Remove ghc-text.
(ghc-cheapskate)[inputs]: Same.
(ghc-semigroups)[inputs]: Same.
(ghc-semigroups-bootstrap)[inputs]: Same.
(ghc-fast-logger)[inputs]: Same.
(ghc-scientific)[inputs]: Same.
(ghc-scientific-bootstrap)[inputs]: Same.
(ghc-texmath)[inputs]: Remove ghc-parsec.
(ghc-highlighting-kate)[inputs]: Same.
(ghc-cmark)[inputs]: Remove ghc-text.
(ghc-cmark-gfm)[inputs]: Same.
(ghc-th-lift-instances)[inputs]: Same.
(ghc-yaml)[inputs]: Same.
(ghc-hslua)[inputs]: Same.
(ghc-hslua-module-text)[inputs]: Same.
(ghc-skylighting-core)[inputs]: Same.
(ghc-doctemplates)[inputs]: Remove ghc-text and ghc-parsec.
(ghc-pandoc)[inputs]: Same.
(ghc-typed-process)[inputs]: Remove ghc-stm.
(ghc-conduit-extra)[inputs]: Remove ghc-stm and ghc-text.
(ghc-xml-types)[inputs]: Remove ghc-text.
(ghc-xml-conduit)[inputs]: Same.
(ghc-pandoc-citeproc)[inputs]: Remove ghc-text and ghc-parsec.
(ghc-regex-tdfa)[inputs]: Remove ghc-parsec.
(ghc-wl-pprint-text)[inputs]: Remove ghc-text.
(ghc-graphviz)[inputs]: Same.
(ghc-system-filepath-bootstrap)[inputs]: Same.
(ghc-system-fileio-bootstrap)[inputs]: Same.
(ghc-shelly)[inputs]: Same.
(ghc-chell)[inputs]: Same.
(ghc-system-filepath)[inputs]: Same.
(ghc-system-fileio)[inputs]: Same.
(ghc-fsnotify)[inputs]: Same.
(ghc-json)[inputs]: Remove ghc-text and ghc-parsec.
(ghc-esqueleto)[inputs]: Remove ghc-text.
(shellcheck)[inputs]: Remove ghc-parsec.
(ghc-errors)[inputs]: Remove ghc-text.
(ghc-chunked-data)[inputs]: Same.
(ghc-uuid-types)[inputs]: Same.
(ghc-uuid)[inputs]: Same.
(ghc-rebase)[inputs]: Remove ghc-stm and ghc-text.
(ghc-foldl)[inputs]: Remove ghc-text.
(ghc-mono-traversable)[inputs]: Same.
(ghc-conduit-combinators)[inputs]: Same.
(ghc-aws)[inputs]: Same.
(ghc-stm-chans)[inputs]: Remove ghc-stm.
(ghc-monad-logger)[inputs]: Remove ghc-text and ghc-stm.
(ghc-shakespeare)[inputs]: Remove ghc-parsec and ghc-text.
(ghc-resource-pool)[inputs]: Remove ghc-stm.
(ghc-attoparsec-iso8601)[inputs]: Remove ghc-text.
(ghc-http-api-data)[inputs]: Same.
(ghc-persistent)[inputs]: Same.
(ghc-aeson-compat)[inputs]: Same.
(ghc-persistent-template)[inputs]: Same.
(ghc-unliftio)[inputs]: Remove ghc-stm.
(ghc-persistent-sqlite)[native-inputs]: Remove ghc-text.
(ghc-bytes)[inputs]: Same.
(ghc-missingh)[inputs]: Remove ghc-parsec.
(ghc-rio)[inputs]: Remove ghc-text.
(ghc-cairo)[inputs]: Same.
(ghc-atomic-write)[inputs]: Remove ghc-text.
[native-inputs]: Same.
(ghc-stm-conduit)[inputs]: Remove ghc-stm.
(ghc-conduit-algorithms)[inputs]: Same.
(ghc-interpolate)[native-inputs]: Remove ghc-text.
(ghc-hpack)[inputs]: Same.
(ghc-inline-c)[inputs]: Remove ghc-parsec.
(ghc-configurator)[inputs]: Remove ghc-text.
(ghc-c2hs)[native-inputs]: Same.
(ghc-libmpd)[inputs]: Same.
(ghc-concurrent-output)[inputs]: Remove ghc-stm.
* gnu/packages/idris.scm (idris)[inputs]: Remove ghc-text.
* gnu/packages/wm.scm (xmobar)[inputs]: Remove ghc-parsec and ghc-stm.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-08-07 22:05:29 -04:00
Robert Vollmert
cce84c34cd
gnu: Add ghc-8.6.
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* gnu/packages/haskell.scm (ghc-8.6): New variable.
Co-authored-by: Timothy Sample <samplet@ngyro.com>
2019-08-07 22:05:29 -04:00
Robert Vollmert
a62ddb748f
gnu: ghc-8: Rename to 'ghc-8.4'.
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* gnu/packages/haskell.scm (ghc-8): Rename to...
(ghc-8.4): ...this.
(ghc-8): New variable.
2019-08-07 22:05:23 -04:00
Marius Bakke
ba7ff983d6
gnu: wpa-supplicant: Update to 2.9.
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* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.9.
2019-08-08 00:30:56 +02:00
Marius Bakke
277faff8ff
gnu: xf86-video-intel: Update to 2.99.917-14.6f4972d.
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* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-14.6f4972d.
2019-08-08 00:30:56 +02:00
Jakob L. Kreuze
d84e9b75b2
machine: Add 'build-locally?' field for managed hosts.
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* gnu/machine/ssh.scm (machine-ssh-configuration-build-locally?): New
variable.
(managed-host-remote-eval): Pass 'build-locally?' to 'remote-eval'.
2019-08-07 18:29:07 -04:00
Ricardo Wurmus
9bd1333e58
Merge remote-tracking branch 'origin/master' into wip-texlive
2019-08-07 22:26:55 +02:00
Jakob L. Kreuze
ec12235ce2
reconfigure: Improve tests for system activation.
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* gnu/tests/reconfigure.scm (run-switch-to-system-test): Assert that
'/run/current-system' points to the activated system, and that new user
accounts specified in the operating system declaration are created.
2019-08-07 15:27:09 -04:00
Efraim Flashner
355ba48c46
gnu: igt-gpu-tools: Rework custom phases.
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* gnu/packages/admin.scm (igt-gpu-tools)[arguments]: Use custom 'autogen
phase to replace 'bootstrap phase.
2019-08-07 20:06:01 +03:00
Efraim Flashner
72bc58f850
gnu: dosbox: Remove extra build phase.
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* gnu/packages/emulators.scm (dosbox)[arguments]: Remove unneeded
'autogen phase.
2019-08-07 20:06:00 +03:00
Efraim Flashner
3192f25948
gnu: zimg: Remove extra build phase.
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* gnu/packages/image.scm (zimg)[arguments]: Remove unneeded 'autogen
phase.
2019-08-07 20:06:00 +03:00
Efraim Flashner
384242adf1
gnu: leptonica: Remove extra build phase.
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* gnu/packages/image.scm (leptonica)[arguments]: Remove unneeded
'autogen phase.
2019-08-07 20:06:00 +03:00
Efraim Flashner
a491856f2a
gnu: ghmm: Remove extra build phase.
...
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Remove unneeded
'autogen phase.
2019-08-07 20:05:59 +03:00
Efraim Flashner
e3a699380e
gnu: ghmm: Update source file-name field.
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* gnu/packages/machine-learning.scm (ghmm)[source]: Change 'file-name
field to include '-checkout' string.
2019-08-07 20:05:59 +03:00
Efraim Flashner
1f53fdae82
gnu: dovecot-libsodium-plugin: Remove extra build phase.
...
* gnu/packages/mail.scm (dovecot-libsodium-plugin)[arguments]: Remove
unneeded 'autogen phase.
2019-08-07 20:05:59 +03:00
Efraim Flashner
7b0efd4c32
gnu: dovecot-trees: Remove extra build phase.
...
* gnu/packages/mail.scm (dovecot-trees)[arguments]: Remove unneeded
'autogen phase.
2019-08-07 20:05:58 +03:00
