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106819 commits

Author SHA1 Message Date
Mădălin Ionel Patrașcu
e0746ee4c4
gnu: Add r-animalcules.
* gnu/packages/bioconductor.scm (r-animalcules): New variable.
2022-12-12 17:30:05 +01:00
Mădălin Ionel Patrașcu
8f80c99e2b
gnu: Add r-plotroc.
* gnu/packages/cran.scm (r-plotroc): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-12-12 17:24:07 +01:00
Mădălin Ionel Patrașcu
b6873a836c
gnu: Add r-gridsvg.
* gnu/packages/cran.scm (r-gridsvg): New variable.
2022-12-12 16:22:28 +01:00
Mădălin Ionel Patrașcu
5154e76a2e
gnu: Add r-gunifrac.
* gnu/packages/cran.scm (r-gunifrac): New variable.
2022-12-12 16:21:50 +01:00
Mădălin Ionel Patrașcu
48e6e67990
gnu: Add r-dirmult.
* gnu/packages/cran.scm (r-dirmult): New variable.
2022-12-12 16:20:36 +01:00
Mădălin Ionel Patrașcu
e99b3c0d25
gnu: Add r-modeest.
* gnu/packages/cran.scm (r-modeest): New variable.
2022-12-12 16:19:49 +01:00
Mădălin Ionel Patrașcu
7ec230fe12
gnu: Add r-fbasics.
* gnu/packages/cran.scm (r-fbasics): New variable.
2022-12-12 16:19:49 +01:00
Mădălin Ionel Patrașcu
3e6e0696cc
gnu: Add r-timeseries.
* gnu/packages/cran.scm (r-timeseries): New variable.
2022-12-12 16:19:18 +01:00
Mădălin Ionel Patrașcu
9e03e01aae
gnu: Add r-gss.
* gnu/packages/cran.scm (r-gss): New variable.
2022-12-12 16:18:43 +01:00
Mădălin Ionel Patrașcu
9c81ab8b39
gnu: Add r-stable.
* gnu/packages/cran.scm (r-stable): New variable.
2022-12-12 16:18:17 +01:00
Mădălin Ionel Patrașcu
977a15d8e8
gnu: Add r-rmutil.
* gnu/packages/cran.scm (r-rmutil): New variable.
2022-12-12 16:17:39 +01:00
Mădălin Ionel Patrașcu
8d2222fac6
gnu: Add r-statip.
* gnu/packages/cran.scm (r-statip): New variable.
2022-12-12 16:17:07 +01:00
Mădălin Ionel Patrașcu
5fb5af5658
gnu: Add r-amplican.
* gnu/packages/bioconductor.scm (r-amplican): New variable.
2022-12-12 15:50:28 +01:00
Mădălin Ionel Patrașcu
84392cd024
gnu: Add r-waffle.
* gnu/packages/cran.scm (r-waffle): New variable.
2022-12-12 15:48:37 +01:00
Mădălin Ionel Patrașcu
ec2388d6b4
gnu: Add r-clustercrit.
* gnu/packages/cran.scm (r-clustercrit): New variable.
2022-12-12 15:48:03 +01:00
Mădălin Ionel Patrașcu
8363719476
gnu: Add r-harshlight.
* gnu/packages/bioconductor.scm (r-harshlight): New variable.
2022-12-12 15:37:15 +01:00
Mădălin Ionel Patrașcu
85d5ce4901
gnu: Add r-altcdfenvs.
* gnu/packages/bioconductor.scm (r-altcdfenvs): New variable.
2022-12-12 15:37:15 +01:00
Mădălin Ionel Patrașcu
97b36ca4d3
gnu: Add r-makecdfenv.
* gnu/packages/bioconductor.scm (r-makecdfenv): New variable.
2022-12-12 15:37:15 +01:00
Tobias Geerinckx-Rice
6bb9424f22
.guix-authorizations: Authorise John Kehayias.
* .guix-authorizations (podiki): Add OpenPGP key fingerprint.
2022-12-11 01:00:01 +01:00
Tobias Geerinckx-Rice
776632c0be
gnu: yajl: Improve description.
* gnu/packages/web.scm (yajl)[synopsis, description]: Edit.  Mark up.
Note generator.
2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice
2a779dc9bd
gnu: yajl: Remove trailing #t from phases.
* gnu/packages/web.scm (yajl)[arguments]: Don't explicitly return #t from phases.
2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice
8fe6d3e844
gnu: yajl: Drop custom ‘lib-’ prefix.
* gnu/packages/web.scm (yajl): New variable, renamed from…
(libyajl): …this one, which is now a DEPRECATED-PACKAGE alias of yajl.
Adjust all users.
2022-12-11 01:00:00 +01:00
Marius Bakke
b5f3a1b84e
gnu: Remove unused module import.
* gnu/packages/version-control.scm: Don't import (guix build python-build-system).
2022-12-12 15:12:58 +01:00
Marius Bakke
16f87d883b
services: zabbix-server: Increase Shepherd grace period.
* gnu/services/monitoring.scm (zabbix-server-shepherd-service)[stop]: Add
 #:grace-period.
2022-12-12 15:12:58 +01:00
Marius Bakke
79564bf997
gnu: ffmpeg: Promote version 5 to the default.
* gnu/packages/video.scm (ffmpeg): Alias to FFMPEG-5.
(mlt-6)[inpust]: Replace "ffmpeg" with FFMPEG-4.
(transcode, libquicktime, ffmpegthumbnailer, mplayer, obs,
simplescreenrecorder, handbrake, ffms2, libopenshot, wlstream)[inputs]: Change
from FFMPEG to FFMPEG-4.
* gnu/packages/arcan.scm (arcan)[inputs]: Likewise.
* gnu/packages/astronomy.scm (stackistry, libskry)[inputs]: Likewise.
* gnu/packages/audio.scm (aubio, bs1770gain)[inputs]: Likewise.
* gnu/packages/education.scm (openboard)[inputs]: Likewise.
* gnu/packages/emulators.scm (dolphin-emu, retroarch, pcsxr, ppsspp)[inputs]:
Likewise.
* gnu/packages/game-development.scm (warsow-qfusion)[inputs]: Likewise.
* gnu/packages/games.scm (oshu, hedgewars)[inputs]: Likewise.
* gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise.
* gnu/packages/graphics.scm (openscenegraph)[inputs]: Likewise.
* gnu/packages/image-processing.scm (opencv, paraview-5.9)[inputs]: Likewise.
* gnu/packages/julia-jll.scm (julia-ffmpeg-jll)[inputs]: Likewise.
* gnu/packages/kde-multimedia.scm (kid3)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[inputs]: Likewise.
* gnu/packages/linphone.scm (mediastreamer2)[inputs]: Likewise.
* gnu/packages/linux.scm (pipewire)[inputs]: Likewise.
(pipewire-0.3)[inputs]: Replace "ffmpeg" with FFMPEG.
* gnu/packages/mp3.scm (chromaprint)[inputs]: Change from FFMPEG to FFMPEG-4.
* gnu/packages/music.scm (musikcube)[inputs]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise.
* gnu/packages/qt.scm (qtwebengine-5)[inputs]: Likewise.
2022-12-12 15:12:58 +01:00
Marius Bakke
bf9d119e32
gnu: Sort module imports in (gnu packages scheme).
* gnu/packages/scheme.scm: Sort imports.  Remove one duplicate.
2022-12-12 15:12:58 +01:00
Marius Bakke
240c823ae1
gnu: pianobar: Update to 2022.04.01.
* gnu/packages/music.scm (pianobar): Update to 2022.04.01.
2022-12-12 15:12:58 +01:00
Marius Bakke
1572071b68
gnu: motion: Remove input labels.
* gnu/packages/video.scm (motion)[native-inputs, inputs]: Remove labels.
2022-12-12 15:12:57 +01:00
Marius Bakke
dce40ccc47
gnu: motion: Update to 4.5.0.
* gnu/packages/video.scm (motion): Update to 4.5.0.
2022-12-12 15:12:57 +01:00
Marius Bakke
3dc667b6f8
gnu: vapoursynth: Remove input labels.
* gnu/packages/video.scm (vapoursynth)[native-inputs]: Remove labels.
2022-12-12 15:12:57 +01:00
Marius Bakke
85ea2dfc4c
gnu: vapoursynth: Update to 61.
* gnu/packages/video.scm (vapoursynth): Update to 61.
2022-12-12 15:12:57 +01:00
Marius Bakke
6bfde85d36
gnu: wxsvg: Update to 1.5.24.
* gnu/packages/wxwidgets.scm (wxsvg): Update to 1.5.24.
2022-12-12 15:12:57 +01:00
Marius Bakke
f9fb8460ce
gnu: tracker-miners: Remove obsolete input.
* gnu/packages/gnome.scm (tracker-miners)[native-inputs]: Remove INTLTOOL.
Add GETTEXT-MINIMAL.
2022-12-12 15:12:57 +01:00
Marius Bakke
b8b4d63137
gnu: OpenLDAP: Update to 2.6.3.
* gnu/packages/openldap.scm (openldap-2.6): Update to 2.6.3.
2022-12-12 15:12:57 +01:00
Ludovic Courtès
302a84a593
Merge branch 'version-1.4.0' 2022-12-12 15:03:35 +01:00
Ludovic Courtès
3677b97030
pki: 'public-keys->acl' deduplicates entries.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>
in <https://issues.guix.gnu.org/50892>.

* guix/pki.scm (public-keys->acl): Add call to 'delete-duplicates'.
* tests/pki.scm ("public-keys->acl deduplication"): New test.
2022-12-12 15:03:05 +01:00
Ricardo Wurmus
94e9651241
gnu: Add python-pomegranate.
* gnu/packages/python-xyz.scm (python-pomegranate): New variable.
2022-12-12 14:37:04 +01:00
Ricardo Wurmus
bc47a1bf02
gnu: Add python-pygtrie.
* gnu/packages/python-xyz.scm (python-pygtrie): New variable.
2022-12-12 14:37:03 +01:00
Ricardo Wurmus
49ec1fbc8f
gnu: Add python-flask-jwt.
* gnu/packages/python-web.scm (python-flask-jwt): New variable.
2022-12-12 14:37:03 +01:00
Ricardo Wurmus
be9e8c3963
gnu: Add python-apispec-webframeworks.
* gnu/packages/python-xyz.scm (python-apispec-webframeworks): New variable.
2022-12-12 14:37:03 +01:00
Ricardo Wurmus
a88fa1ced7
gnu: Add python-fit-nbinom.
* gnu/packages/python-xyz.scm (python-fit-nbinom): New variable.
2022-12-12 14:37:03 +01:00
Ricardo Wurmus
97cfa1cd78
gnu: Add python-py4j.
* gnu/packages/python-xyz.scm (python-py4j): New variable.
2022-12-12 14:37:03 +01:00
Ricardo Wurmus
df9a7c2032
gnu: Add python-imbalanced-learn.
* gnu/packages/machine-learning.scm (python-imbalanced-learn): New variable.
2022-12-12 14:37:03 +01:00
Ricardo Wurmus
91d4a78f41
gnu: Add python-cleanlab-1.
* gnu/packages/machine-learning.scm (python-cleanlab-1): New variable.
2022-12-12 14:37:03 +01:00
Ricardo Wurmus
eb23379828
gnu: Add python-cleanlab.
* gnu/packages/machine-learning.scm (python-cleanlab): New variable.
2022-12-12 14:37:03 +01:00
Ricardo Wurmus
2c8a53cb6b
gnu: bioperl-minimal: Remove trailing #T from build phase.
* gnu/packages/bioinformatics.scm (bioperl-minimal)[arguments]: Remove
trailing #T from build phase.
2022-12-12 14:37:03 +01:00
Ricardo Wurmus
7c8832e106
gnu: u-boot: Use plain list of inputs.
* gnu/packages/bootloaders.scm (u-boot)[native-inputs]: Drop input labels.
2022-12-12 14:37:03 +01:00
Ricardo Wurmus
5b0e656e57
gnu: u-boot: Update to 2022.10.
* gnu/packages/bootloaders.scm (u-boot): Update to 2022.10.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Disable
fit_pre_load_data, which depends on openssl.
2022-12-12 14:37:03 +01:00
Joeke de Graaf
ad4bb682d3
gnu: eisl: Update to 2.65.
* gnu/packages/lisp.scm (eisl): Update to 2.65.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-12 11:51:45 +01:00
Paul A. Patience
7a1f1a48cb
gnu: cl-april: Update to 1.0-3.bdd74f1.
* gnu/packages/lisp-xyz.scm (sbcl-april): Update to 1.0-3.bdd74f1.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-12 11:34:46 +01:00