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Author	SHA1	Message	Date
Ricardo Wurmus	25f0964c3e	gnu: Add randfold. ... * gnu/packages/bioinformatics.scm (randfold): New variable. Change-Id: If2cea9c8d5323296015dc21ea7a3d1b677ae2798	2024-01-23 21:31:51 +01:00
Ricardo Wurmus	ebad9d6c0e	gnu: Add python-pyfasta. ... * gnu/packages/bioinformatics.scm (python-pyfasta): New variable. Change-Id: Ib2ab0a6eb250309633d5be33c18409227bce84ba	2024-01-23 21:26:50 +01:00
Ricardo Wurmus	f7373261e9	gnu: Add python-fcsparser. ... * gnu/packages/bioinformatics.scm (python-fcsparser): New variable. Change-Id: I87ed7f10bbfdf7d689cb6289a5f5ad31872f9de0	2024-01-23 21:22:45 +01:00
Ricardo Wurmus	469405375c	gnu: Add lsgkm. ... * gnu/packages/bioinformatics.scm (lsgkm): New variable. Change-Id: I0ea35354c7856e7425567cd4ac27ab7fc2ab0d9e	2024-01-23 21:18:07 +01:00
Mark H Weaver	648085dab6	gnu: icecat: Update to 115.7.0-guix0-preview1 [security fixes]. ... Includes fixes for CVE-2024-0741, CVE-2024-0742, CVE-2024-0746, CVE-2024-0747, CVE-2024-0749, CVE-2024-0750, CVE-2024-0751, CVE-2024-0753, and CVE-2024-0755. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.	2024-01-23 11:09:02 -05:00
Efraim Flashner	40fb160a5e	Revert "gnu: source-highlight: Wrap scripts." ... This package causes the rebuild of more than 9000 packages. This reverts commit 367bc2d198.	2024-01-23 17:33:54 +02:00
Artyom V. Poptsov	e3f4ab49b1	gnu: kubo: Update to 0.18.0. ... * gnu/packages/ipfs.scm (kubo): Update to 0.18.0. [inputs]: Add go-github-com-gorilla-mux. Change-Id: I4eccdfcf9eadbdf25728fcca766c5238efb0d57f Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>	2024-01-23 14:07:01 +00:00
Efraim Flashner	367bc2d198	gnu: source-highlight: Wrap scripts. ... * gnu/packages/pretty-print.scm (source-highlight)[arguments]: Add a phase to wrap shell scripts so they can find the source-hightlight binary. [inputs]: Add guile-3.0. Change-Id: Ia8d006d969385210d5c82b4a0dd1f78178306ac2	2024-01-23 16:04:42 +02:00
Sharlatan Hellseher	fbeae77ae6	gnu: trurl: Update to 0.9. ... * gnu/packages/curl.scm (trurl): Update to 0.9. Change-Id: Ieb0f19e6d48897dceb32e317613a301f521c9b94	2024-01-23 14:01:51 +00:00
Ricardo Wurmus	d3129b3f1e	gnu: Add eddylab-squid. ... * gnu/packages/bioinformatics.scm (eddylab-squid): New variable. Change-Id: Icb02f42fc95d2001a639e22608a01ef9074158bc	2024-01-23 13:52:36 +01:00
Ricardo Wurmus	6a82745746	gnu: Add python-magic-impute. ... * gnu/packages/bioinformatics.scm (python-magic-impute): New variable. Change-Id: Iba5240e9920a1045078c736553cb1d56069963b5	2024-01-23 13:42:55 +01:00
Ricardo Wurmus	1bdc4eeb46	gnu: Add python-graphtools. ... * gnu/packages/graph.scm (python-graphtools): New variable. Change-Id: If08b1460447702f7ec2e64f013a52a7065076b01	2024-01-23 13:42:55 +01:00
Ricardo Wurmus	a313875476	gnu: Add python-tasklogger. ... * gnu/packages/python-xyz.scm (python-tasklogger): New variable. Change-Id: I53319b70b7788090e8873a912d7c56044c0bb5b2	2024-01-23 13:36:48 +01:00
Ricardo Wurmus	561d429aa4	gnu: python-nose2: Update to 0.14.0. ... * gnu/packages/check.scm (python-nose2): Update to 0.14.0. [native-inputs]: Remove python-coverage. [propagated-inputs]: Remove python-six. Change-Id: I15a30723fe49cca9929524e543d12c9e2f4b02ca	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	a6b6d1bd6a	gnu: python-scikit-learn: Disable one test. ... This test fails with the upgrade of scipy. * gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Disable test_singular_matrix test. Change-Id: I47627403826bb5c52f4d578399c7cabaa3f8838d	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	123c880fe9	gnu: Add python-pygsp. ... * gnu/packages/graph.scm (python-pygsp): New variable. Change-Id: I8dd195216617e5cdb4a7453ecbe23cd9ff9e06a3	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	6e835cd380	gnu: Add r-scenic. ... * gnu/packages/bioinformatics.scm (r-scenic): New variable. Change-Id: Iff1f501a406ba1a12e49093a575e03facc98f303	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	994817bfdc	gnu: python-scipy: Update to 1.12.0. ... * gnu/packages/python-science.scm (python-scipy): Update to 1.12.0. [propagated-inputs]: Add python-jupytext, python-mpmath, python-mypy, python-numpydoc, python-pydata-sphinx-theme, python-pydevtool, python-rich-click, python-sphinx, python-threadpoolctl, and python-typing-extensions; remove python-pyparsing. [native-inputs]: Add python-hypothesis, python-pycodestyle, python-pytest-cov, and python-pytest-xdist; remove python-threadpoolctl. Change-Id: I81a4831e3d94c58416f7d35ec47de90370b88210	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	2eb061be79	gnu: r-desctools: Update to 0.99.53. ... * gnu/packages/statistics.scm (r-desctools): Update to 0.99.53. Change-Id: I425b37907b51a93fafa193d217bdf68636f608a7	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	24d6410125	gnu: r-plotly: Update to 4.10.4. ... * gnu/packages/statistics.scm (r-plotly): Update to 4.10.4. Change-Id: Idd10685b1ab521056e0468f0c0c188543c11c96a	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	863ba4b830	gnu: r-xml: Update to 3.99-0.16.1. ... * gnu/packages/statistics.scm (r-xml): Update to 3.99-0.16.1. Change-Id: I2936eac03ec20b091e45b920f946d92028099973	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	b4a255c2fb	gnu: r-rsqlite: Update to 2.3.5. ... * gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.5. Change-Id: I43e95bc4ff0b0dc36cf9f3de1705d63bc5681286	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	bf933e4f11	gnu: r-roxygen2: Update to 7.3.1. ... * gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.1. Change-Id: I5d23ee576beb4dc4dc1e49d13cc38ffef0d33512	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	4fa0d97e99	gnu: r-maldiquant: Update to 1.22.2. ... * gnu/packages/cran.scm (r-maldiquant): Update to 1.22.2. Change-Id: Ia483cff36bb3a2cbf4b691bb4832ce98757aabe0	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	0a733805d8	gnu: r-modeldata: Update to 1.3.0. ... * gnu/packages/cran.scm (r-modeldata): Update to 1.3.0. Change-Id: Ibaef5366948e9ca45325d279a99f14417ca43e8e	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	9eb92d55e0	gnu: r-yardstick: Update to 1.3.0. ... * gnu/packages/cran.scm (r-yardstick): Update to 1.3.0. [propagated-inputs]: Add r-withr. Change-Id: I00a5d74cca4396e685df32f85d998004a3e94edc	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	a9de282219	gnu: r-lightgbm: Update to 4.3.0. ... * gnu/packages/cran.scm (r-lightgbm): Update to 4.3.0. Change-Id: I9da6fbcf9558f1ed47b41abd7183f3c53ba1ec67	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	ad552bf927	gnu: r-rstanarm: Update to 2.32.1. ... * gnu/packages/cran.scm (r-rstanarm): Update to 2.32.1. Change-Id: Ib83276a66add397aeacd830803f94f713f0c22e3	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	fe495a9c64	gnu: r-matrixextra: Update to 0.1.15. ... * gnu/packages/cran.scm (r-matrixextra): Update to 0.1.15. Change-Id: I72c274e3075cc40d0f6aafb8199a4594c1a518c6	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	3995f40cd7	gnu: r-graphlayouts: Update to 1.1.0. ... * gnu/packages/cran.scm (r-graphlayouts): Update to 1.1.0. Change-Id: I5056c2158af15aeed9d5b53a52149e67d6d50b56	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	306fa840ed	gnu: r-mcmcpack: Update to 1.7-0. ... * gnu/packages/cran.scm (r-mcmcpack): Update to 1.7-0. Change-Id: I2e480dee05c23158b9ab58de5f9a90e623a7f6b2	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	899ee468d3	gnu: r-ggfun: Update to 0.1.4. ... * gnu/packages/cran.scm (r-ggfun): Update to 0.1.4. Change-Id: I08cf695cd03bf28aaa2f2b7b4a35c6632a7027c4	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	495372ea1f	gnu: r-rmpfr: Update to 0.9-5. ... * gnu/packages/cran.scm (r-rmpfr): Update to 0.9-5. Change-Id: I32ba06d98406989aca7129f9f647e836e06663f8	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	da3bd82788	gnu: r-bigrquery: Update to 1.5.0. ... * gnu/packages/cran.scm (r-bigrquery): Update to 1.5.0. [propagated-inputs]: Remove r-assertthat, r-glue, r-progress, r-rcpp, and r-withr; add r-clock and r-cpp11. Change-Id: I3f1eb2e32ce901231303a2eb905e8fd7aa0f995a	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	ef3b092587	gnu: r-fmsb: Update to 0.7.6. ... * gnu/packages/cran.scm (r-fmsb): Update to 0.7.6. Change-Id: I9acec8e49ba036f263223a37c53cf9d4a82ba59f	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	617c41f418	gnu: r-quickjsr: Update to 1.1.0. ... * gnu/packages/cran.scm (r-quickjsr): Update to 1.1.0. Change-Id: Ic2fb19a11c781c25b63cc2ed1bf185201aca0fe8	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	e2284fa77d	gnu: r-cmplot: Update to 4.5.1. ... * gnu/packages/cran.scm (r-cmplot): Update to 4.5.1. Change-Id: I34faf9e7c4b786aaae660ba18c65b429304db601	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	e8a7227004	gnu: r-nodbi: Update to 0.10.0. ... * gnu/packages/cran.scm (r-nodbi): Update to 0.10.0. [propagated-inputs]: Add r-r-utils and r-v8. Change-Id: I1cc2c0c99f15cde415c90fa8959f3e0ffc546458	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	4438bfd898	gnu: r-overlap: Update to 0.3.9. ... * gnu/packages/cran.scm (r-overlap): Update to 0.3.9. [propagated-inputs]: Add r-suntools. Change-Id: I3dc9817e0c7a5b4c4422e285aa5ccf4320047bd6	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	4dda10ae21	gnu: r-import: Update to 1.3.2. ... * gnu/packages/cran.scm (r-import): Update to 1.3.2. Change-Id: Ic78d705b104683e14f3b1848ba0218bfcc6e8ab1	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	f4eb36050e	gnu: r-xts: Update to 0.13.2. ... * gnu/packages/cran.scm (r-xts): Update to 0.13.2. Change-Id: I0f551d91a7012fabb117160c54e9c17883a48ca9	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	3d0fa8fb65	gnu: r-psych: Update to 2.4.1. ... * gnu/packages/cran.scm (r-psych): Update to 2.4.1. Change-Id: Iebac111c7dd7a8bab9df6789c9861e499b4439d3	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	b12217b3d0	gnu: r-timechange: Update to 0.3.0. ... * gnu/packages/cran.scm (r-timechange): Update to 0.3.0. Change-Id: I5c8dce37f2f268145b7288845ef0c7d1115eb445	2024-01-23 13:36:47 +01:00
Ricardo Wurmus	254eb0d3fd	gnu: r-ctrdata: Update to 1.17.0. ... * gnu/packages/cran.scm (r-ctrdata): Update to 1.17.0. [propagated-inputs]: Add r-digest. Change-Id: I505ea3605193eb461001c8e58cd9ef8d725d8f63	2024-01-23 13:36:46 +01:00
Ricardo Wurmus	5082ea45f9	gnu: r-ps: Update to 1.7.6. ... * gnu/packages/cran.scm (r-ps): Update to 1.7.6. Change-Id: Id7ef2ce2c709c8bffb7d3257324390400d55b29e	2024-01-23 13:36:46 +01:00
Ricardo Wurmus	e7aee059ad	gnu: r-paletteer: Update to 1.6.0. ... * gnu/packages/cran.scm (r-paletteer): Update to 1.6.0. Change-Id: Iff3c0636541bf3deb7a50706a62a44331a77e820	2024-01-23 13:36:46 +01:00
Ricardo Wurmus	704b793d82	gnu: r-gensa: Update to 1.1.14. ... * gnu/packages/cran.scm (r-gensa): Update to 1.1.14. Change-Id: I6557eeb5f277908a25ded34321153ceddc927a09	2024-01-23 13:36:46 +01:00
Ricardo Wurmus	d7a7054b7e	gnu: r-shadowtext: Update to 0.1.3. ... * gnu/packages/cran.scm (r-shadowtext): Update to 0.1.3. Change-Id: I771671f689c247cbb7ade0ad0d2b78a6e28514ff	2024-01-23 13:36:46 +01:00
Ricardo Wurmus	2e08d0d631	gnu: Add r-suntools. ... * gnu/packages/cran.scm (r-suntools): New variable. Change-Id: Id1cb0828e8046ce635edc124c3f99bc891806cdd	2024-01-23 13:36:46 +01:00
Ricardo Wurmus	f0d8d59807	gnu: r-antiword: Update to 1.3.2. ... * gnu/packages/cran.scm (r-antiword): Update to 1.3.2. [source]: Simplify snippet. [arguments]: Remove trailing #T from build phase. [synopsis]: Change capitalization. [description]: Use complete sentences. Change-Id: I0cffbda247dd57462f89c20a94773f871a029b60	2024-01-23 13:36:46 +01:00