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TomZ
4e3314a4c5
gnu: fulcrum: Update to 1.1.0 
* gnu/packages/finance.scm (fulcrum): Update to 1.1.0

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-17 23:18:32 +02:00
mikadoZero
a37c59af62
doc: Update nar decompression examples. 
* doc/guix.texi (Invoking guix archive): Show /gzip URL.
Add cross-reference to "Invoking guix challenge".
(Invoking guix challenge): Show /lzip URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-17 23:18:32 +02:00
Ludovic Courtès
1e7281108b
services: account: Have 'user-processes' depend on 'user-homes'. 
Until now, 'user-homes' happened to start right after 'user-processes'
and before services that depend on a home directory but the dependency
was not explicit.  This addresses it.

* gnu/system/shadow.scm (account-service-type): Extend
USER-PROCESSES-SERVICE-TYPE.
 2020-04-17 23:18:32 +02:00
Ludovic Courtès
10c413685f
services: Move 'user-processes' to (gnu services shepherd). 
* gnu/services/base.scm (%do-not-kill-file)
(user-processes-shepherd-service, user-processes-service-type): Move
to...
* gnu/services/shepherd.scm: ... here.
 2020-04-17 23:18:32 +02:00
Ludovic Courtès
9d0b9c7c6c
maint: Provide the configuration file in the VM image. 
This fixes a bug introduced in 362bcdb1b0
whereby the VM image would no longer contain /etc/config.scm, contrary
to what the manual says.

Reported by dbdude on #guix.

* Makefile.am (release): Pass '--save-provenance' to 'guix system
vm-image'.
* doc/guix.texi (Running Guix in a VM): Adjust file name accordingly.
 2020-04-17 23:18:32 +02:00
Mark H Weaver
f0da92cb42
gnu: linux-libre: Update to 5.4.33. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.33.
(linux-libre-5.4-pristine-source): Update hash.
 2020-04-17 15:02:04 -04:00
Mark H Weaver
4298fbe2ce
gnu: linux-libre@5.6: Update to 5.6.5. 
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.5.
(linux-libre-5.6-pristine-source): Update hash.
 2020-04-17 15:01:25 -04:00
Mark H Weaver
e419e972bc
gnu: linux-libre@4.19: Update to 4.19.116. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.116.
(linux-libre-4.19-pristine-source): Update hash.
 2020-04-17 15:00:19 -04:00
Marius Bakke
a7dbd38859
gnu: ungoogled-chromium: Update to 81.0.4044.113-0.b484ad4 [fixes CVE-2020-6457]. 
* gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.113.
(%chromium-origin): Update hash.
 2020-04-17 17:03:20 +02:00
TomZ
8fa4ac5be4
status: Allow double-click select of URLs. 
Various places while downloading or compiling guix prints
the source URL. This change makes the URL easier to use by
placing a space between the URL and the trailing dots.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2020-04-17 17:03:05 +02:00
Ricardo Wurmus
974bf81776
gnu: python-pygenometracks: Update to 3.3. 
* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.3.
[arguments]: Add phase "relax-requirements"; disable tests.
[propagated-inputs]: Remove python-configparser and python-hicexplorer; add
python-gffutils, python-pysam, and python-tqdm.
 2020-04-17 15:53:03 +02:00
Ricardo Wurmus
d8fce2362b
gnu: Add python-hicmatrix. 
* gnu/packages/bioinformatics.scm (python-hicmatrix): New variable.
 2020-04-17 15:53:03 +02:00
Ricardo Wurmus
c55beaecd8
gnu: python-cooler: Update to 0.8.7. 
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7.
[propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and
python-simplejson.
[native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add
python-pytest.
 2020-04-17 15:53:03 +02:00
Ricardo Wurmus
4a085ffc16
gnu: python-pybigwig: Update to 0.3.17. 
* gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.17.
 2020-04-17 15:53:03 +02:00
Ricardo Wurmus
d3f292b8dc
gnu: python-tables: Update to 3.6.1. 
* gnu/packages/python-xyz.scm (python-tables): Update to 3.6.1.
[arguments]: Adjust use-gcc phase.
 2020-04-17 15:53:03 +02:00
Pierre Langlois
79ef0726a9
gnu: python-podcastparser: Run tests. 
* gnu/packages/gpodder.scm (python-podcastparser)[native-inputs]: Add
python-coverage.
[arguments]: Replace 'check phase and invoke "nosetests".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-17 13:03:02 +02:00
Pierre Langlois
5ea902874b
gnu: gpodder: Run tests. 
* gnu/packages/gpodder.scm (gpodder)[native-inputs]: Add python-coverage and
python-minimock.
[arguments]: Replace the 'check phase and invoke "make unittest".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-17 13:03:02 +02:00
Pierre Langlois
54e3eb06ca
gnu: gpodder: Update to 3.10.15. 
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.15.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-17 13:03:02 +02:00
Ludovic Courtès
1cfa6bcc2c
maint: Build binary tarball without '-K'. 
This is a followup to 8b292ffd3c.

* Makefile.am (guix-binary.%.tar.xz): Remove '-K' to allow for offloading.
 2020-04-17 13:03:01 +02:00
Ludovic Courtès
08a70aa424
doc: Replace incorrect uses of @var with @code. 
@var is for meta-syntactic variables but it is used in some places for
mere variables, which is incorrect and leads to inconsistent layout in
PDF and HTML.

* doc/guix.texi (package Reference, The Store Monad)
(G-Expressions, operating-system Reference)
(File Systems, Base Services, Log Rotation)
(Networking Services, Invoking guix deploy): Replace incorrect uses of
@var with @code.
 2020-04-17 13:03:01 +02:00
Pierre Langlois
84ce7c5a55
gnu: dovecot: Add libunwind input for arm. 
* gnu/packages/mail.scm (dovecot)[inputs]: Add libunwind when targetting arm.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-17 13:03:01 +02:00
Efraim Flashner
d312bbfa5a
gnu: khard: Move propagated-inputs to inputs. 
As a package one would install we can rely on wrapping the package and
not propagating inputs to make it work correctly.

* gnu/packages/mail.scm (khard)[propagated-inputs]: Move all python
packages ...
[inputs]: ... to here.
 2020-04-17 10:47:35 +03:00
Efraim Flashner
c135577dbf
gnu: khal: Move propagated inputs to inputs. 
As a package one would install we can rely on wrapping the package and
not propagating inputs to make it work correctly.

* gnu/packages/calendar.scm (khal)[propagated-inputs]: Move all python
packages...
[inputs]: ... to here.
 2020-04-17 10:42:41 +03:00
Efraim Flashner
b9dd2a2fb7
gnu: khal: Fix build with python-urwid-2.1.0. 
* gnu/packages/calendar.scm (khal)[source]: Download upstream patch to
fix compatibility with newer python-urwid.
 2020-04-17 10:40:34 +03:00
Christopher Baines
2cc226bbc7
gnu: diffoscope.scm: Add missing import. 
This follows on from 2d9886f7e8.

* gnu/packages/diffoscope.scm: Import (gnu packages maths).
 2020-04-17 07:33:37 +01:00
Vagrant Cascadian
2d9886f7e8
gnu: diffoscope: Update to 141. 
* gnu/packages/diffoscope (diffoscope): Update to 141.
  [arguments]: Add phase add-known-tools.
  [native-inputs]: Add hdf5.
 2020-04-16 20:46:38 -07:00
Vagrant Cascadian
cdac010c19
gnu: disorderfs: Update to 0.5.9. 
* gnu/packages/file-systems (disorderfs): Update to 0.5.9.
 2020-04-16 20:46:35 -07:00
Marius Bakke
bff70d93d2
gnu: python-jedi: Fix test failure on some file systems. 
Reported by sirgazil on #guix.

* gnu/packages/patches/python-jedi-sort-project-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-xyz.scm (python-jedi)[source](patches): Add it.
[arguments]: Run tests more verbosely while at it.
 2020-04-17 00:51:48 +02:00
Nicolas Goaziou
91fb989f10
gnu: xournalpp: Remove outdated comments. 
* gnu/packages/pdf.scm (xournalpp): Remove outdated comments.  This is
a followup to 9cb2f28c5a.
 2020-04-16 23:43:50 +02:00
Ricardo Wurmus
c9f321e52a
doc: Document building and installing from JSON files. 
* doc/guix.texi (Invoking guix package): Augment pargraphs for
"--install-from-file".
(Invoking guix build): Document building from JSON files.
* doc/package-hello.json: New file.
* doc/local.mk (EXTRA_DIST): Add it.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
3c0422b9be
import/print: Don't factorize URI if there's no version match. 
* guix/import/print.scm (package->code): If FACTORIZE-URI returns just the
unmodified string use that as the URI.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
3fd4c4c839
import/utils: alist->package: Include arguments. 
* guix/import/utils.scm (alist->package): Process arguments field in input
data and include it in the generated package.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
7cef499bb0
import/json: json->code: Handle files with more than one definition. 
* guix/import/json.scm (json->code): Convert JSON arrays to lists of package
definitions.
(json->scheme-file): Write all expressions to the target file.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
3532fc39ff
import/utils: alist->package: Ignore known inputs. 
* guix/import/utils.scm (alist->package): Accept optional list of known
inputs, which are excluded from the specification lookup.
* guix/import/print.scm (package->code)[package-lists->code]: Handle inputs
which are just symbols.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
86a3b540d0
import/print: package->code: Wrap S-expression in definition. 
* guix/import/print.scm (package->code): Return a definition, not just a
package expression.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
c893432320
import/json: Use json->code. 
* guix/import/json.scm (json->code): Export procedure.
* guix/scripts/import/json.scm (guix-import-json): Use json->code.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
4f353c485d
scripts/package: Handle JSON files. 
* guix/scripts/package.scm (%options): Support loading from JSON files when
"install-from-file" is used.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
f87e563201
scripts/build: options->things-to-build: Handle .json files. 
* guix/scripts/build.scm (options->things-to-build): Handle files that end on
.json.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
16dd764691
import/json: Add json->scheme-file. 
* guix/import/json.scm (json->code, json->scheme-file): New procedures.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
6269dd567e
import/print: package->code: Wrap build system value in module reference. 
* guix/import/print.scm (package->code): Return build system value with
corresponding module.
 2020-04-16 23:41:52 +02:00
Ricardo Wurmus
1475d45112
import/print: Return license with prefix. 
* guix/import/print.scm (license->code): Prepend license: prefix.
 2020-04-16 23:41:49 +02:00
Nicolas Goaziou
7b2cb1bf19
gnu: wireshark: Update to 3.2.3. 
* gnu/packages/networking.scm (wireshark): Update to 3.2.3.
 2020-04-16 21:59:50 +02:00
Efraim Flashner
be02a4cb81
gnu: python-hy: Update to 0.18.0. 
* gnu/packages/python-xyz.scm (python-hy): Update to 0.18.0.
[arguments]: Make all phases return #t.
[propagated-inputs]: Remove python-clint, python-fastentrypoints. Add
python-colorama.
(python2-hy): Remove variable.
 2020-04-16 22:40:40 +03:00
Efraim Flashner
626874eb3f
gnu: python-icalendar: Update to 4.0.5. 
* gnu/packages/python-xyz.scm (python-icalendar): Update to 4.0.5.
 2020-04-16 22:40:40 +03:00
Efraim Flashner
e40e7fdf09
gnu: toot: Update to 0.26.0. 
* gnu/packages/mastodon.scm (toot): Update to 0.26.0.
 2020-04-16 22:40:39 +03:00
Efraim Flashner
bc6c3f48ff
gnu: python-urwid: Update to 2.1.0. 
* gnu/packages/python-xyz.scm (python-urwid): Update to 2.1.0.
 2020-04-16 22:40:39 +03:00
Efraim Flashner
c1c2fa68df
gnu: python-vobject: Update to 0.9.6.1. 
* gnu/packages/python-xyz.scm (python-vobject): Update to 0.9.6.1.
 2020-04-16 22:40:39 +03:00
Efraim Flashner
2765787d65
gnu: python-pyicu: Update to 2.4.3. 
* gnu/packages/python-xyz.scm (python-pyicu): Update to 2.4.3.
[properties]: Remove field.
(python2-pyicu): Remove package customizations.
 2020-04-16 22:40:39 +03:00
Efraim Flashner
70333ee612
gnu: khard: Update to 0.16.1. 
* gnu/packages/mail.scm (khard): Update to 0.16.1.
[arguments]: Remove custom 'install-doc phase. Add 'install-completions
phase.
 2020-04-16 22:40:39 +03:00
Nicolas Goaziou
9cb2f28c5a
gnu: xournalpp: Update to 1.0.18. 
* gnu/packages/pdf.scm (xournalpp): Update to 1.0.18.
 2020-04-16 21:38:55 +02:00