Ben Woodcroft
d285657eae
gnu: bedtools: Update to 2.26.0.
...
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.26.0.
2016-07-07 23:27:19 +10:00
Ben Woodcroft
7c7643a7f0
gnu: diamond: Update to 0.8.11.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.11.
2016-07-07 18:21:10 +08:00
Ricardo Wurmus
274da826f9
gnu: Add r-seqinr.
...
* gnu/packages/bioinformatics.scm (r-seqinr): New variable.
2016-07-07 10:46:17 +02:00
Efraim Flashner
8157af2e09
gnu: khmer: Limit to x86_64 systems only.
...
* gnu/packages/bioinformatics.scm (khmer)[supported-systems]: New field.
2016-07-07 06:33:28 +03:00
Ricardo Wurmus
5fb5dffbd4
gnu: Add multiqc.
...
* gnu/packages/bioinformatics.scm (multiqc): New variable.
2016-07-05 16:32:37 +02:00
Ricardo Wurmus
1f1b20b8be
gnu: Add bits.
...
* gnu/packages/bioinformatics.scm (bits): New variable.
2016-07-05 15:43:36 +02:00
Ricardo Wurmus
66e40e0065
gnu: Add EMBOSS.
...
* gnu/packages/bioinformatics.scm (emboss): New variable.
2016-07-05 12:32:12 +02:00
Roel Janssen
744004a31f
gnu: Add r-edger.
...
* gnu/packages/bioinformatics.scm (r-edger): New variable.
2016-07-04 14:49:07 +02:00
Roel Janssen
7d4224d794
gnu: Add r-limma.
...
* gnu/packages/bioinformatics.scm (r-limma): New variable.
2016-07-04 14:39:16 +02:00
Ben Woodcroft
71830f0e49
gnu: vsearch: Update to 2.0.1.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.1.
2016-07-01 09:01:28 +10:00
Ben Woodcroft
8dec2229a2
gnu: blast+: Update to 2.4.0.
...
* gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
2016-06-29 22:42:47 +10:00
Ben Woodcroft
3bce0f14b2
gnu: star: Update to 2.5.2a.
...
* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
2016-06-29 10:14:22 +10:00
Ben Woodcroft
6c737963f6
gnu: htslib: Update to 1.3.1.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
2016-06-29 10:14:22 +10:00
Ricardo Wurmus
ec9466388e
gnu: Add SEEK.
...
* gnu/packages/bioinformatics.scm (seek): New variable.
2016-06-28 22:49:05 +02:00
Ben Woodcroft
d6e374a0d9
gnu: mafft: Update to 7.299.
...
* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
2016-06-28 21:42:15 +10:00
Ben Woodcroft
45469ebe52
gnu: metabat: Update to 0.26.3.
...
* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3.
[arguments]: Update include and linking paths accordingly.
2016-06-28 21:28:06 +10:00
Ben Woodcroft
af45244e36
gnu: diamond: Update to 0.8.9.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
2016-06-28 19:31:25 +10:00
Ben Woodcroft
94ff31572d
gnu: Add khmer.
...
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-06-27 21:35:16 +10:00
Ben Woodcroft
9ded145717
gnu: Add python-screed.
...
* gnu/packages/bioinformatics.scm (python-screed, python2-screed):
New variables.
2016-06-27 21:16:39 +10:00
Ben Woodcroft
c2e575185b
gnu: vsearch: Update to 2.0.0.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.0.
2016-06-26 12:43:39 +10:00
Ben Woodcroft
69af462496
gnu: vsearch: Update to 0.11.2.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 0.11.2.
2016-06-22 07:51:12 +10:00
Ben Woodcroft
7b3df1e56e
gnu: Add r-vegan.
...
* gnu/packages/bioinformatics.scm (r-vegan): New variable.
2016-06-21 21:29:17 +10:00
Ben Woodcroft
cec2653bb4
gnu: diamond: Update to 0.8.7.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.7.
2016-06-21 20:00:38 +10:00
Ricardo Wurmus
4714d521e3
gnu: Add r-bsgenome-mmusculus-ucsc-mm10.
...
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10): New
variable.
2016-06-15 17:08:08 +02:00
Ben Woodcroft
e4a44a6aa5
gnu: Add ruby-bio-kseq.
...
* gnu/packages/bioinformatics.scm (ruby-bio-kseq): New variable.
2016-06-14 07:57:09 +10:00
Ricardo Wurmus
883302daf2
gnu: piranha: Update to 1.2.1.
...
* gnu/packages/bioinformatics.scm (piranha): Update to 1.2.1.
2016-06-13 11:53:38 +02:00
Hartmut Goebel
698bd29799
gnu: Use full SHA1 commit ids.
...
* gnu/packages/bioinformatics.scm (pbtranscript-tofu, mosaik,
smithlab-cpp, piranha): Use full SHA1 commit ids.
* gnu/packages/ci.scm (hydra): Likewise.
* gnu/packages/compression.scm (sfarkxtc): Likewise.
* gnu/packages/emacs.scm (emacs-ob-ipython): Likewise.
* gnu/packages/games.scm (mars, emulation-station): Likewise.
* gnu/packages/gnunet.scm (guile-gnunet): Likewise.
* gnu/packages/music.scm (non-sequencer): Likewise.
* gnu/packages/version-control.scm (git-flow, git-test-sequence): Likewise.
* gnu/packages/xorg.scm (xf86-video-intel): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-06-05 00:05:38 +02:00
Ben Woodcroft
6ac0a0fbe7
gnu: diamond: Update to 0.8.5.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.5.
2016-06-04 09:28:54 +10:00
Ricardo Wurmus
64efa3078a
gnu: Add r-genomationdata.
...
* gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
2016-05-31 16:29:37 +02:00
Ben Woodcroft
9fcc3509a7
gnu: Update diamond to 0.8.3.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.3.
2016-05-28 23:44:16 +10:00
Ricardo Wurmus
0783787436
gnu: Add ParDRe.
...
* gnu/packages/bioinformatics.scm (pardre): New variable.
2016-05-23 12:55:09 +02:00
Ricardo Wurmus
7740f58128
gnu: r-genomation: Update to 1.4.2.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
2016-05-20 15:18:23 +02:00
Ricardo Wurmus
8ede249e0a
gnu: r-genomicfeatures: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
2016-05-20 15:18:23 +02:00
Ricardo Wurmus
192e1ea8d1
gnu: r-summarizedexperiment: Update to 1.2.2.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
2016-05-20 15:18:23 +02:00
Ricardo Wurmus
d7420566a9
gnu: r-biocparallel: Update to 1.6.2.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
2016-05-20 15:18:23 +02:00
Ricardo Wurmus
73af676feb
gnu: r-annotationdbi: Update to 1.34.2.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
2016-05-20 15:18:23 +02:00
Ricardo Wurmus
679e670b36
gnu: r-variantannotation: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
2016-05-20 15:18:23 +02:00
Ricardo Wurmus
186ed87337
gnu: r-genomeinfodb: Update to 1.8.1.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1.
2016-05-20 15:18:23 +02:00
Ben Woodcroft
7c544991dc
gnu: diamond: Do not specify target architecture.
...
* gnu/packages/bioinformatics.scm (diamond)[arguments]: Do not
specify target architecture.
2016-05-18 21:25:06 +10:00
Ricardo Wurmus
e62ffce538
gnu: Add Piranha.
...
* gnu/packages/bioinformatics.scm (piranha): New variable.
2016-05-18 11:59:34 +02:00
Ben Woodcroft
849485f5a0
gnu: sortmerna: Update to 2.1b.
...
* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1b.
[inputs]: New field.
2016-05-17 21:45:49 +10:00
Ben Woodcroft
daaeed765a
gnu: vsearch: Update to 1.11.1.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 1.11.1.
2016-05-17 21:36:46 +10:00
Ben Woodcroft
122395f9fc
gnu: diamond: Update to 0.8.1.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.1.
[source]: Remove 'snippet'.
[build-system]: Use cmake-build-system.
[arguments]: Remove modifications to phases.
[native-inputs]: Remove field.
[inputs]: Remove 'boost'.
2016-05-17 21:07:00 +10:00
Ricardo Wurmus
96101b6718
gnu: r-zlibbioc: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.18.0.
2016-05-16 20:59:50 +02:00
Ricardo Wurmus
a0fe3aeecf
gnu: r-motifrg: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.16.0.
2016-05-16 20:59:38 +02:00
Ricardo Wurmus
1f5786a918
gnu: r-seqlogo: Update to 1.38.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.38.0.
2016-05-16 20:59:27 +02:00
Ricardo Wurmus
8adc3b628d
gnu: r-genomation: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.0.
2016-05-16 20:59:14 +02:00
Ricardo Wurmus
7555817c2b
gnu: r-seqpattern: Update to 1.4.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.4.0.
2016-05-16 20:59:04 +02:00
Ricardo Wurmus
d1bff89d26
gnu: r-impute: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.46.0.
2016-05-16 20:58:49 +02:00
Ricardo Wurmus
5190ed1751
gnu: r-bsgenome: Update to 1.40.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.0.
2016-05-16 20:58:35 +02:00
Ricardo Wurmus
e48e88c217
gnu: r-topgo: Update to 2.24.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.24.0.
[propagated-inputs]: Add r-matrixstats.
2016-05-16 20:58:24 +02:00
Ricardo Wurmus
0c56023557
gnu: r-graph: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.50.0.
2016-05-16 20:58:08 +02:00
Ricardo Wurmus
c12b0a5a30
gnu: r-genomicfeatures: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.0.
2016-05-16 20:57:55 +02:00
Ricardo Wurmus
d23fbf1eb9
gnu: r-rtracklayer: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.0.
2016-05-16 20:57:43 +02:00
Ricardo Wurmus
3cd551ea7b
gnu: r-genomicalignments: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.0.
2016-05-16 20:57:30 +02:00
Ricardo Wurmus
d848ed7cf2
gnu: r-summarizedexperiment: Update to 1.2.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.0.
2016-05-16 20:57:21 +02:00
Ricardo Wurmus
b4c5a0db22
gnu: r-rsamtools: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.24.0.
2016-05-16 20:57:10 +02:00
Ricardo Wurmus
2477d9773a
gnu: r-biostrings: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.0.
2016-05-16 20:56:58 +02:00
Ricardo Wurmus
6a2a0de1ab
gnu: r-biocparallel: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.0.
2016-05-16 20:56:39 +02:00
Ricardo Wurmus
63cea37234
gnu: r-biomart: Update to 2.28.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.28.0.
2016-05-16 20:56:29 +02:00
Ricardo Wurmus
c4a4e17938
gnu: r-annotationdbi: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.0.
2016-05-16 20:56:19 +02:00
Ricardo Wurmus
4466a02c9f
gnu: r-biobase: Update to 2.32.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.32.0.
2016-05-16 20:56:09 +02:00
Ricardo Wurmus
828980cad6
gnu: r-genomicranges: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.0.
2016-05-16 20:55:58 +02:00
Ricardo Wurmus
e782ca3e97
gnu: r-xvector: Update to 0.12.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.0.
2016-05-16 20:55:46 +02:00
Ricardo Wurmus
052ee32b24
gnu: r-variantannotation: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.18.0.
2016-05-16 20:55:32 +02:00
Ricardo Wurmus
d1ab3d8fa5
gnu: r-genomeinfodb: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.0.
2016-05-16 20:55:20 +02:00
Ricardo Wurmus
952ff8c862
gnu: r-iranges: Update to 2.6.0.
...
* gnu/packages/bioinformatics (r-iranges): Update to 2.6.0.
2016-05-16 20:55:11 +02:00
Ricardo Wurmus
3654a61146
gnu: r-s4vectors: Update to 0.10.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.0.
2016-05-16 20:54:59 +02:00
Ricardo Wurmus
a936bf59ea
gnu: r-dnacopy: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.46.0.
2016-05-16 20:54:37 +02:00
Ricardo Wurmus
dbfeba5209
gnu: r-biocgenerics: Update to 0.18.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.18.0.
2016-05-16 20:53:48 +02:00
Efraim Flashner
a83e604662
gnu: hmmer: Update urls.
...
* gnu/packages/bioinformatics.scm (hmmer)[source]: Project has moved to
eddylab, with their downloads.
[home-page]: Update to new homepage.
2016-05-16 14:28:53 +03:00
Mark H Weaver
99828fa788
gnu: Update module imports for asciidoc and doxygen.
...
This is a followup to commit 0573a923de
2016-05-12 20:18:15 -04:00
Ricardo Wurmus
83b84fa812
gnu: edirect: Update to 4.10.
...
* gnu/packages/bioinformatics.scm (edirect): Update to 4.10.
2016-05-04 16:45:43 +02:00
Ben Woodcroft
324efb8888
gnu: Add muscle.
...
* gnu/packages/bioinformatics.scm (muscle): New variable.
2016-04-30 15:46:24 +10:00
Ricardo Wurmus
fb868e3395
gnu: r-acsnminer: Update to 0.16.01.29.
...
* gnu/packages/bioinformatics.scm (r-acsnminer): Update to 0.16.01.29.
2016-04-26 17:06:17 +02:00
Ricardo Wurmus
e1c2ad6777
gnu: r-qtl: Update to 1.39-5.
...
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.39-5.
2016-04-26 17:06:17 +02:00
Roel Janssen
6b49a37e6b
gnu: Add filevercmp.
...
* gnu/packages/bioinformatics.scm (filevercmp): New variable.
2016-04-26 16:41:15 +02:00
Ben Woodcroft
79b555edeb
gnu: samtools: Update to 1.3.1.
...
* gnu/packages/bioinformatics.scm (samtools): Update to 1.3.1.
2016-04-24 09:45:07 +10:00
Hartmut Goebel
1ad15c1669
gnu: Rename Java packages to match new naming specification.
...
* gnu/packages/bioinformatics.scm (htsjdk): Rename to...
(java-htsjdk): ...this.
(ngs-java): Rename to...
(java-ngs): ...this.
(ncbi-vdb)[arguments,inputs]: Use new name.
* gnu/packages/java.scm (swt): Rename to...
(java-swt): ...this.
* gnu/packages/music.scm (tuxguitar)[make-flags,inputs,arguments]: Use
new name of package "swt".
2016-04-19 16:55:03 +02:00
Ricardo Wurmus
4d16cc5133
gnu: python2-plastid: Propagate setuptools.
...
* gnu/packages/bioinformatics.scm (python2-plastid)[native-inputs]: Move
python2-setuptools from here...
[propagated-inputs]: ...to here.
2016-04-19 16:12:51 +02:00
Ricardo Wurmus
f94bf1983b
gnu: Add python-plastid.
...
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): New
variables.
2016-04-19 12:16:01 +02:00
Ricardo Wurmus
4db9433aa0
gnu: Add python-twobitreader.
...
* gnu/packages/bioinformatics.scm (python-twobitreader,
python2-twobitreader): New variables.
2016-04-19 12:16:01 +02:00
Alex Kost
fc1adab148
gnu: packages: Use 'search-patches' everywhere.
...
* gnu/packages/abiword.scm: Use 'search-patches' for 'patches' field.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/algebra.scm: Likewise.
* gnu/packages/animation.scm: Likewise.
* gnu/packages/apr.scm: Likewise.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/autotools.scm: Likewise.
* gnu/packages/avahi.scm: Likewise.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/bash.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/ci.scm: Likewise.
* gnu/packages/cmake.scm: Likewise.
* gnu/packages/cpio.scm: Likewise.
* gnu/packages/cross-base.scm: Likewise.
* gnu/packages/dico.scm: Likewise.
* gnu/packages/doxygen.scm: Likewise.
* gnu/packages/ebook.scm: Likewise.
* gnu/packages/elf.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/firmware.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/ftp.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gawk.scm: Likewise.
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/gd.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/gnunet.scm: Likewise.
* gnu/packages/gnupg.scm: Likewise.
* gnu/packages/gnuzilla.scm: Likewise.
* gnu/packages/graphics.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/icu4c.scm: Likewise.
* gnu/packages/idutils.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/imagemagick.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/ldc.scm: Likewise.
* gnu/packages/libcanberra.scm: Likewise.
* gnu/packages/libevent.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libunwind.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/llvm.scm: Likewise.
* gnu/packages/lsh.scm: Likewise.
* gnu/packages/lua.scm: Likewise.
* gnu/packages/lxqt.scm: Likewise.
* gnu/packages/mail.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/messaging.scm: Likewise.
* gnu/packages/mit-krb5.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/multiprecision.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ninja.scm: Likewise.
* gnu/packages/nvi.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/orpheus.scm: Likewise.
* gnu/packages/ots.scm: Likewise.
* gnu/packages/parallel.scm: Likewise.
* gnu/packages/patchutils.scm: Likewise.
* gnu/packages/pcre.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/polkit.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/qemu.scm: Likewise.
* gnu/packages/qt.scm: Likewise.
* gnu/packages/ratpoison.scm: Likewise.
* gnu/packages/rdf.scm: Likewise.
* gnu/packages/readline.scm: Likewise.
* gnu/packages/rush.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/sdl.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/ssh.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/tcsh.scm: Likewise.
* gnu/packages/texinfo.scm: Likewise.
* gnu/packages/tls.scm: Likewise.
* gnu/packages/tor.scm: Likewise.
* gnu/packages/tv.scm: Likewise.
* gnu/packages/valgrind.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/vtk.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/xiph.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
* gnu/packages/zip.scm: Likewise.
2016-04-14 10:38:21 +03:00
Ricardo Wurmus
6dc6099853
gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3.
...
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
New variable.
2016-04-11 15:11:16 +02:00
Ricardo Wurmus
943bd6279f
gnu: Add r-bsgenome-celegans-ucsc-ce6.
...
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6): New
variable.
2016-04-11 15:11:16 +02:00
Ricardo Wurmus
a3e9028770
gnu: Add r-bsgenome-mmusculus-ucsc-mm9.
...
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9): New
variable.
2016-04-11 15:11:15 +02:00
Ricardo Wurmus
ae2462f7dd
gnu: Add r-motifrg.
...
* gnu/packages/bioinformatics.scm (r-motifrg): New variable.
2016-04-11 11:03:27 +02:00
Ricardo Wurmus
c90a4baff6
gnu: Add r-bsgenome-hsapiens-ucsc-hg19.
...
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): New
variable.
2016-04-11 11:03:27 +02:00
Ricardo Wurmus
936e7d6774
gnu: Add r-seqlogo.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): New variable.
2016-04-11 11:03:27 +02:00
Roel Janssen
9e3ba31c53
gnu: Add r-zlibbioc.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-06 17:38:42 -04:00
Roel Janssen
b669d9c4c8
gnu: Add r-variantannotation.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-06 17:38:42 -04:00
Roel Janssen
9b36e25607
gnu: vcftools: Update to 0.1.14.
...
* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.14.
[arguments]: Do not modify phases as it is not needed anymore.
[native-inputs]: Add 'pkg-config'.
[home-page]: Update to new location.
Signed-off-by: Alex Kost <alezost@gmail.com>
2016-04-05 11:29:32 +03:00
Efraim Flashner
ddb8312911
gnu: python2-pbcore: Update to 1.2.8.
...
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.8.
[native-inputs]: Add python2-docutils, python2-nose, python2-sphinx.
2016-03-30 22:45:35 +03:00
Ricardo Wurmus
f315f4fcab
gnu: r-genomation: Update to 1.2.2.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.2.2.
2016-03-30 11:59:16 +02:00
Ricardo Wurmus
571f0b63d5
gnu: r-genomicfeatures: Update to 1.22.13.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to
1.22.13.
2016-03-30 11:59:16 +02:00
Ricardo Wurmus
ffaf72ad96
gnu: r-rtracklayer: Update to 1.30.4.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.30.4.
2016-03-30 11:59:15 +02:00
Ricardo Wurmus
ac2d8b0fb8
gnu: r-genomicalignments: Update to 1.6.3.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.6.3.
2016-03-30 11:59:15 +02:00
Ricardo Wurmus
7eade1c5f9
gnu: r-summarizedexperiment: Update to 1.0.2.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.0.2.
2016-03-30 11:59:15 +02:00
Ricardo Wurmus
53fd0f5e1d
gnu: r-biostrings: Update to 2.38.4.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.38.4.
2016-03-30 11:59:15 +02:00
Ricardo Wurmus
5fe3115415
gnu: r-genomicranges: Update to 1.22.4.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.22.4.
2016-03-30 11:59:15 +02:00
