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Author SHA1 Message Date
Marius Bakke
85f330b98d
gnu: zathura-ps: Update to 0.2.5. 
* gnu/packages/pdf.scm (zathura-ps): Update to 0.2.5.
 2017-12-27 21:04:38 +01:00
Marius Bakke
8bad37d8b5
gnu: zathura-cb: Update to 0.1.7. 
* gnu/packages/pdf.scm (zathura-cb): Update to 0.1.7.
 2017-12-27 21:04:38 +01:00
Marius Bakke
f2984d709f
gnu: zathura: Update to 0.3.8. 
* gnu/packages/pdf.scm (zathura): Update to 0.3.8.
[native-inputs]: Add GLIB:BIN.
 2017-12-27 21:04:37 +01:00
Marius Bakke
bf38d5be00
gnu: girara: Update to 0.2.8. 
* gnu/packages/gtk.scm (girara): Update to 0.2.8.
[native-inputs]: Add GLIB:BIN.
 2017-12-27 21:04:37 +01:00
Marius Bakke
94b779b6a4
gnu: mujs: Update to 1.0.2. 
* gnu/packages/javascript.scm (mujs): Update to 1.0.2.
[source]: Download over HTTPS.
[home-page]: Update to redirected URL.
 2017-12-27 21:04:37 +01:00
Marius Bakke
97156ba242
gnu: libpipeline: Update to 1.5.0. 
* gnu/packages/man.scm (libpipeline): Update to 1.5.0.
 2017-12-27 21:04:37 +01:00
Marius Bakke
1ef03eaae5
gnu: xf86-video-intel: Update snapshot to af6d8e9. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-9-af6d8e9.
 2017-12-27 21:04:37 +01:00
Marius Bakke
3f9be7883a
gnu: seabios: Update to 1.11.0. 
* gnu/packages/firmware.scm (seabios): Update to 1.11.0.
 2017-12-27 21:04:37 +01:00
Eric Bavier
aac1aa75f4
gnu: Add Pioneer. 
* gnu/packages/games.scm (pioneer): New variable.
 2017-12-27 08:10:12 -06:00
Kei Kebreau
15b60fc313
gnu: python-pillow: Fix test failures on i686-linux and armhf-linux. 
* gnu/packages/patches/python-pillow-fix-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pillow)[source]: Use it.
 2017-12-27 11:51:15 -05:00
Thomas Danckaert
aa498fc003
gnu: lollypop: Use meson-build-system, update to 0.9.306. 
* gnu/packages/gnome.scm (lollypop) [origin]: Update version to 0.9.306,
download tarball from gitlab.
[build-system]: Use meson-build-system.
[arguments]: Remove phases for "pseudo meson build system".
[native-inputs]: Add glib:bin and gtk+:bin, remove ninja.
[inputs]: Remove gtk+ and meson.
 2017-12-27 16:14:44 +01:00
Christopher Baines
90205b625e
gnu: Run some tests in the mongodb package check phase. 
Previously the mongodb dbtests and unittests were only built, and not actually
run.

* gnu/packages/databases.scm (mongodb)[native-inputs]: Add python2-minimal,
  python2-pymongo and python2-pyyaml for running the resmoke.py program, and
  add tzdata as some tests fail without this.
  [arguments]: Run the tests through the resmoke.py script in the check phase,
  set TZDIR as a couple of tests seem to depend on this, add a comment about
  the resource requirements of the tests, as they require a large amount of
  disk space, and disable the async_stream_test, as it seems to hang.
 2017-12-27 13:28:34 +00:00
Christopher Baines
a469c69508
gnu: Build wiredtiger with builtin compressors. 
WiredTiger is used by MongoDB, and it seems to require it to be built with
builtin support for snappy compression.

* gnu/packages/databases.scm (wiredtiger)[arguments]: Replace --enable-zlib
  and --enable-snappy with --with-builtins=snappy,zlib.
 2017-12-27 13:28:24 +00:00
Rutger Helling
a37f4adb94
Revert "gnu: qemu: Enable Samba support." 
This reverts commit 8427650305.
 2017-12-27 14:19:19 +01:00
Ben Woodcroft
f14a6586ec
gnu: vsearch: Update to 2.6.2. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.6.2.
 2017-12-27 22:12:08 +10:00
Rutger Helling
cad464a8fc
gnu: lookingglass: Update to a9. 
* gnu/packages/virtualization.scm (lookingglass): Update to a9.
 2017-12-27 13:10:26 +01:00
Danny Milosavljevic
4583d82721
gnu: hexchat: Disable (duplicate) icon theme generation. 
* gnu/packages/messaging.scm (hexchat): Disable (duplicate) icon theme
generation.
 2017-12-27 12:35:09 +01:00
Danny Milosavljevic
6368eb397d
gnu: totem: Disable (duplicate) cache generation. 
* gnu/packages/gnome.scm (totem): Disable (duplicate) cache generation.
 2017-12-27 12:35:08 +01:00
Rutger Helling
abc5ef5a7f
gnu: mpv: Update to 0.28.0. 
* gnu/packages/video.scm (mpv): Update to 0.28.0.
[inputs]: Change ffmpeg to ffmpeg-git, add wayland-protocols.
 2017-12-27 10:51:31 +01:00
Rutger Helling
dff543e889
gnu: Add ffmpeg-git. 
* gnu/packages/video.scm (ffmpeg-git): New variable.
 2017-12-27 10:51:26 +01:00
Rutger Helling
8427650305
gnu: qemu: Enable Samba support. 
* gnu/packages/virtualization.scm (qemu)[arguments]: Change #:configure-flags to
a list, add --smbd flag.
[inputs]: Add samba.
 2017-12-27 10:24:49 +01:00
Mark H Weaver
e8e860a559
gnu: icecat: Add more fixes from upstream mozilla-esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
* gnu/packages/patches/icecat-bug-1414945.patch,
gnu/packages/patches/icecat-bug-1424373-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2017-12-26 22:53:02 -05:00
Leo Famulari
b3ecb3fe8d
gnu: gpgme: Find the GnuPG executable in the environment. 
This partially reverts commit 0e06bec250 (gnu: gpgme: Build with the
latest GnuPG) because it caused python-pygpgme and python2-pygpgme to
fail to build:

<https://lists.gnu.org/archive/html/guix-devel/2017-12/msg00371.html>

* gnu/packages/gnupg.scm (gpgme)[arguments]: Remove '--enable-fixed-path'
from #:configure-flags.
[inputs]: Move gnupg to native-inputs.
 2017-12-26 21:12:27 -05:00
Tobias Geerinckx-Rice
684ca67dd9
gnu: nginx-documentation: Fix typo in synopsis. 
* gnu/packages/web.scm (nginx-documentation)[synopis]: Add missing article.
 2017-12-27 03:05:11 +01:00
Tobias Geerinckx-Rice
53ae35e443
gnu: python-sqlalchemy-utils: Update to 0.32.21. 
* gnu/packages/databases.scm (python-sqlalchemy-utils): Update to 0.32.21.
 2017-12-26 16:44:52 +01:00
Tobias Geerinckx-Rice
bcdc5caed7
gnu: python-sadisplay: Update to 0.4.8. 
* gnu/packages/databases.scm (python-sadisplay): Update to 0.4.8.
 2017-12-26 16:43:57 +01:00
Tobias Geerinckx-Rice
031462bac8
gnu: r-circlize: Improve description. 
* gnu/packages/cran.scm (r-circlize)[description]: Fix typo and adjust
grammar based on upstream description.
 2017-12-26 16:43:45 +01:00
Tobias Geerinckx-Rice
afa427e328
gnu: r-circlize: Update to 0.4.3. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.3.
 2017-12-26 16:25:39 +01:00
Tobias Geerinckx-Rice
1f143575ea
gnu: emacs-cider: Update to 0.15.1. 
* gnu/packages/emacs.scm (emacs-cider): Update to 0.15.1.
 2017-12-26 14:41:02 +01:00
Tobias Geerinckx-Rice
41775ab1d1
gnu: adwaita-icon-theme: Update to 3.26.1. 
* gnu/packages/gnome.scm (adwaita-icon-theme): Update to 3.26.1.
 2017-12-26 14:41:02 +01:00
Tobias Geerinckx-Rice
51c482e494
gnu: gexiv2: Update to 0.10.7. 
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.7.
[build-system]: Switch to meson-build-system.
 2017-12-26 14:41:01 +01:00
Rutger Helling
41faf6f2c2
gnu: retroarch: Update to 1.7.0. 
* gnu/packages/games.scm (retroarch): Update to 1.7.0.
 2017-12-26 11:43:00 +01:00
Mark H Weaver
f76ff984eb
gnu: libev: Improve the description. 
* gnu/packages/libevent.scm (libev)[description]: Rewrite to be more
descriptive and less judgmental, based on Debian's description.
 2017-12-26 03:34:12 -05:00
Mark H Weaver
3c0cfe3be5
gnu: linux-libre: Adapt to renamed configuration options in 4.14.9. 
This is a followup to commit 95b969bc9c.

* gnu/packages/aux-files/linux-libre/4.14-x86_64.conf,
gnu/packages/aux-files/linux-libre/4.14-i686.conf: Adapt to the configuration
options being renamed from CONFIG_*_UNWINDER to CONFIG_UNWINDER_* in version
4.14.9.
 2017-12-26 01:53:39 -05:00
Mark H Weaver
95b969bc9c
gnu: linux-libre: Update to 4.14.9. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.9.
(%linux-libre-hash): Update hash.
 2017-12-25 23:06:23 -05:00
Mark H Weaver
5338e62572
gnu: linux-libre@4.9: Update to 4.9.72. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.72.
 2017-12-25 23:05:27 -05:00
Mark H Weaver
e4d8584efb
gnu: linux-libre@4.4: Update to 4.4.108. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.108.
 2017-12-25 23:04:47 -05:00
Leo Famulari
0b5eff847f
gnu: Move libupnp to (gnu packages upnp). 
* gnu/packages/libupnp.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/upnp.scm (libupnp): New variable.
 2017-12-25 22:52:03 -05:00
Leo Famulari
c9c7c030be
gnu: libupnp: Update to 1.6.24. 
*  gnu/packages/libupnp.scm (libupnp): Update to 1.6.24.
 2017-12-25 22:39:29 -05:00
Leo Famulari
187cc2b403
gnu: syncthing: Update to 0.14.42. 
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.42.
 2017-12-25 22:26:58 -05:00
Leo Famulari
3b58b7f27c
gnu: go-github-com-ccding-go-stun: Update to 0.0.0-1.d9bbe8f. 
* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Update to
0.0.0-1.d9bbe8f.
 2017-12-25 22:26:58 -05:00
Leo Famulari
23e2c09c0c
gnu: go-github-com-audriusbutkevicius-pfilter: Update to 0.0.0-1.d9bbe8f. 
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-pfilter):
Update to 0.0.0-1.d9bbe8f.
 2017-12-25 22:26:54 -05:00
Leo Famulari
7153627946
gnu: darktable: Update to 2.4.0. 
* gnu/packages/photo.scm (darktable): Update to 2.4.0.
 2017-12-25 20:53:56 -05:00
Tobias Geerinckx-Rice
a7f27da7f2
gnu: check, databases: Use HTTPS for bitbucket.org. 
* gnu/packages/check.scm (python-pytest-capturelog)[home-page]: Likewise.
* gnu/packages/databases.scm (python-alembic)[home-page]: Likewise.
 2017-12-26 02:27:42 +01:00
Tobias Geerinckx-Rice
69d973cc39
gnu: liblangtag: Use bitbucket.org home page. 
* gnu/packages/libreoffice.scm (liblangtag)[home-page]: Use alternate URL
and HTTPS.
 2017-12-26 02:22:53 +01:00
Tobias Geerinckx-Rice
08455a3464
gnu: python-redis: Update to 2.10.6. 
* gnu/packages/databases.scm (python-redis): Update to 2.10.6.
 2017-12-26 02:03:41 +01:00
Tobias Geerinckx-Rice
030274ccac
gnu: python-alembic: Update to 0.9.6. 
* gnu/packages/databases.scm (python-alembic): Update to 0.9.6.
 2017-12-26 02:03:41 +01:00
Tobias Geerinckx-Rice
6370fb2d26
gnu: bitshuffle: Update to 0.3.4. 
* gnu/packages/compression.scm (bitshuffle): Update to 0.3.4.
[arguments]: Delete ‘make-required-dir’ phase that no longer is.
 2017-12-26 02:02:01 +01:00
Tobias Geerinckx-Rice
8c03d1fa93
gnu: jack2: Update to 1.9.12. 
* gnu/packages/audio.scm (jack2): Update to 1.9.12.
[arguments]: Delete ‘patch-fast_rand’ phase.
 2017-12-26 02:02:01 +01:00
Tobias Geerinckx-Rice
0e0015f26c
gnu: sicp: Use HTTPS for home page. 
* gnu/packages/scheme.scm (sicp)[home-page]: Use HTTPS.
 2017-12-26 02:02:01 +01:00
Danny Milosavljevic
6e9749ef8f
gnu: Add python-mnemonic. 
* gnu/packages/finance.scm (python-mnemonic, python2-mnemonic): New variables.
 2017-12-26 01:13:48 +01:00
Danny Milosavljevic
00d3f022b3
gnu: Add python-trezor-agent. 
* gnu/packages/finance.scm (python-trezor-agent, python2-trezor-agent): New
variables.
 2017-12-26 01:06:56 +01:00
Danny Milosavljevic
d0d5f72688
gnu: Add python-ecpy. 
* gnu/packages/python-crypto.scm (python-ecpy, python2-ecpy): New variables.
 2017-12-25 23:42:48 +01:00
Danny Milosavljevic
579b436252
gnu: Add python-ed25519. 
* gnu/packages/python-crypto.scm (python-ed25519, python2-ed25519): New
variables.
 2017-12-25 23:42:48 +01:00
Danny Milosavljevic
467cfaa3fc
gnu: Add python-semver. 
* gnu/packages/python.scm (python-semver, python2-semver): New variables.
 2017-12-25 23:42:47 +01:00
Tobias Geerinckx-Rice
ac97dce1d2
gnu: check, llvm: Use HTTPS for llvm.org home pages. 
* gnu/packages/check.scm (python-lit)[home-page]: Use HTTPS.
* gnu/packages/llvm.scm (llvm, clang, clang-runtime)[home-page]: Likewise.
 2017-12-25 02:01:01 +01:00
Tobias Geerinckx-Rice
a431b03500
gnu: python-rednose: Update to 1.2.3. 
* gnu/packages/check.scm (python-rednose): Update to 1.2.3.
 2017-12-25 02:01:00 +01:00
Tobias Geerinckx-Rice
8c2781f005
gnu: python-lit: Update to 0.5.1. 
* gnu/packages/check.scm (python-lit): Update to 0.5.1.
 2017-12-25 01:44:31 +01:00
Tobias Geerinckx-Rice
4338d3f8a1
gnu: python-freezegun: Update to 0.3.9. 
* gnu/packages/check.scm (python-freezegun): Update to 0.3.9.
 2017-12-25 01:41:00 +01:00
Tobias Geerinckx-Rice
7108ad5b75
gnu: scheme48-rx: Update to 0.0.0-2.dd9037f. 
* gnu/packages/scheme.scm (scheme48-rx): Update to 0.0.0-2.dd9037f.
 2017-12-25 01:14:21 +01:00
Tobias Geerinckx-Rice
9b9e3503a9
gnu: cbatticon: Update to 1.6.7. 
* gnu/packages/admin.scm (cbatticon): Update to 1.6.7.
 2017-12-25 01:13:21 +01:00
Tobias Geerinckx-Rice
2705a97ec4
gnu: sicp: Update to 20170703-1.225c172. 
* gnu/packages/scheme.scm (sicp): Update to 20170703-1.225c172.
 2017-12-25 01:02:21 +01:00
Tobias Geerinckx-Rice
30fd958e98
gnu: slib: Update home page. 
* gnu/packages/scheme.scm (slib)[home-page]: Update URL.
 2017-12-25 01:02:21 +01:00
Nicolas Goaziou
6cf61cefe2
gnu: emacs: Update org and org-plus-contrib. 
* gnu/packages/emacs.scm (emacs-org):
(emacs-org-contrib): Update to 20171224, aka release 9.1.5.
 2017-12-24 23:47:05 +01:00
Nicolas Goaziou
c12282314d
gnu: games: Add the-butterfly-effect. 
* gnu/packages/games.scm (the-butterfly-effect): New variable.
 2017-12-24 23:36:32 +01:00
Leo Famulari
09c9fe4a77
gnu: gnuastro: Update to 0.5. 
* gnu/packages/astronomy.scm (gnuastro): Update to 0.5.
[inputs]: Use the latest libjpeg.
[arguments]: Remove an obselete option from #:configure-flags.
 2017-12-24 16:51:32 -05:00
Rutger Helling
66776562be
gnu: parallel: Update to 20171222. 
* gnu/packages/parallel.scm (parallel): Update to 20171222.
 2017-12-24 21:16:38 +01:00
Ricardo Wurmus
dc7d6d4ece
gnu: Fix copyright symbol. 
* gnu/packages/maths.scm: Fix copyright line for Dave Love.
 2017-12-24 20:51:48 +01:00
Kei Kebreau
595b175103
gnu: scmutils: Update to 20160827. 
* gnu/packages/scheme.scm (scmutils): Update to 20160827.
[arguments]: Fix indentation.
 2017-12-24 14:02:06 -05:00
ng0
b982fb1c09
gnu: pdsh: Update to 2.33. 
pdsh was located on Google Code, which shut down recently.
Four other distros switched to the new URL introduced in
this commit.

* gnu/packages/ssh.scm (pdsh): Update to 2.33.
[source]: Use new upstream URL.
(arguments)[phases]: Add new files to substitute in 'patch-/bin/sh' phase.
Add new 'patch-tests' phase to make test 't6036-long-output-lines' pass.
[native-inputs]: Add 'which'.
[home-page]: Use new upstream URL.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2017-12-24 10:59:35 -05:00
Tobias Geerinckx-Rice
31af847b5d
gnu: python-cbor: Mark up description. 
* gnu/packages/serialization.scm (python-cbor)[description]: Use @dfn{}.
 2017-12-24 16:12:19 +01:00
Tobias Geerinckx-Rice
5dff075263
gnu: ecl-flexi-streams: Update to 1.0.16. 
* gnu/packages/lisp.scm (ecl-flexi-streams): Update to 1.0.16
 2017-12-24 16:12:19 +01:00
Tobias Geerinckx-Rice
becee9e353
gnu: python-ruamel.yaml: Update to 0.15.35. 
* gnu/packages/serialization.scm (python-ruamel.yaml): Update to 0.15.35
 2017-12-24 16:12:19 +01:00
Tobias Geerinckx-Rice
8895a968e4
gnu: dotherside: Update to 0.6.3. 
* gnu/packages/qt.scm (dotherside): Update to 0.6.3
 2017-12-24 16:12:18 +01:00
Tobias Geerinckx-Rice
0c9f73cd23
gnu: ruby-json-pure: Fix build failure. 
* gnu/packages/ruby.scm (ruby-json-pure)[native-inputs]: Add ragel.
 2017-12-24 16:12:18 +01:00
Tobias Geerinckx-Rice
53fd476fa5
gnu: ruby-simplecov-html: Update to 0.10.2. 
* gnu/packages/ruby.scm (ruby-simplecov-html): Update to 0.10.2
 2017-12-24 16:12:17 +01:00
Tobias Geerinckx-Rice
1bf02b2036
gnu: ruby-pry: Update to 0.11.3. 
* gnu/packages/ruby.scm (ruby-pry): Update to 0.11.3
 2017-12-24 16:12:17 +01:00
Tobias Geerinckx-Rice
05f2f8bcde
gnu: ruby-hoe: Update to 3.16.2. 
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.16.2
 2017-12-24 16:12:17 +01:00
Tobias Geerinckx-Rice
f03153db00
gnu: ruby-daemons: Update to 1.2.5. 
* gnu/packages/ruby.scm (ruby-daemons): Update to 1.2.5
 2017-12-24 16:12:16 +01:00
Tobias Geerinckx-Rice
fb812f7a2e
gnu: ruby-crass: Update to 1.0.3. 
* gnu/packages/ruby.scm (ruby-crass): Update to 1.0.3
 2017-12-24 16:12:16 +01:00
Tobias Geerinckx-Rice
554245dad0
gnu: cmark: Mark up description. 
* gnu/packages/markup.scm (cmark)[description]: Use @dfn{}.
 2017-12-24 16:12:15 +01:00
Tobias Geerinckx-Rice
e7ef061b91
gnu: cmark: Update to 0.28.3. 
* gnu/packages/markup.scm (cmark): Update to 0.28.3
 2017-12-24 16:12:15 +01:00
Tobias Geerinckx-Rice
27a976ed67
gnu: pulsemixer: Update to 1.4.0. 
* gnu/packages/pulseaudio.scm (pulsemixer): Update to 1.4.0
 2017-12-24 16:12:15 +01:00
Tobias Geerinckx-Rice
16c76cc4c8
gnu: python-reportlab: Use HTTPS for home page. 
* gnu/packages/pdf.scm (python-reportlab)[home-page]: Use HTTPS.
 2017-12-24 16:12:14 +01:00
Tobias Geerinckx-Rice
02861325ee
gnu: python-reportlab: Update to 3.4.0. 
* gnu/packages/pdf.scm (python-reportlab): Update to 3.4.0
 2017-12-24 16:12:14 +01:00
Tobias Geerinckx-Rice
0796954b85
gnu: r-xts: Update to 0.10-1. 
* gnu/packages/cran.scm (r-xts): Update to 0.10-1
 2017-12-24 16:12:13 +01:00
Tobias Geerinckx-Rice
e9960d8cba
gnu, doc: Use HTTPS for cran.r-project.org home pages. 
* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm)
(r-maldiquant, r-gprofiler)[home-page]: Use HTTPS.
* gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape)
(r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle)
(r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim)
(r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken)
(r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab)
[home-page]: Likewise.
* gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign)
(r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability)
(r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr)
(r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports)
(r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops)
(r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options)
(r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel)
(r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3)
(r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots)
(r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools)
(r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp)
(r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn)
(r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]:
Likewise.
* gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]:
Likewise.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
 2017-12-24 16:12:13 +01:00
Rutger Helling
6cd46747e7
gnu: Add wine64-staging. 
* gnu/packages/wine.scm (wine64-staging): New variable.
 2017-12-24 16:07:52 +01:00
Kei Kebreau
c154c97f90
gnu: gambit-c: Update to 4.8.8. 
* gnu/packages/scheme.scm (gambit-c): Update to 4.8.8.
 2017-12-24 10:04:32 -05:00
Nicolas Goaziou
51f019072d
gnu: wine: Add missing copyright line. 2017-12-24 16:02:53 +01:00
Rutger Helling
141708ed39
gnu: wine-staging: Add gtk+, libva inputs. 
* gnu/packages/wine.scm (wine-staging)[inputs]: Add gtk+ and libva.
 2017-12-24 15:47:45 +01:00
Nicolas Goaziou
7866d8c819
gnu: Add wine-staging. 
* gnu/packages/wine.scm (wine-staging): New variable.

Signed-off-by: Rutger Helling <rhelling@mykolab.com>
 2017-12-24 15:06:32 +01:00
Rutger Helling
546f86de16
gnu: xpra: Update to 2.2.1. 
* gnu/packages/xorg.scm (xpra): Update to 2.2.1.
 2017-12-24 13:59:57 +01:00
Kei Kebreau
7815d09f77
gnu: racket: Update to 6.11. 
* gnu/packages/scheme.scm (racket): Update to 6.11.
 2017-12-23 20:47:21 -05:00
Tobias Geerinckx-Rice
dbd37c1381
gnu: openstack: Update ‘permanently moved’ home pages. 
In practice, this switches all of them to HTTPS.

* gnu/packages/openstack.scm (python-debtcollector, python-mox3)
(python-os-client-config, python-oslo.context, python-oslo.i18n)
(python-oslo.log, python-oslo.serialization, python-oslosphinx)
(python-oslotest, python-oslo.utils, python-keystoneclient)
(python-swiftclient, python-git-review)[home-page]: Update.
 2017-12-24 00:00:51 +01:00
Tobias Geerinckx-Rice
9be5ecdf8a
gnu: python, python-web: Update ‘permanently moved’ home pages. 
In practice, this switches all of them to HTTPS.

* gnu/packages/python.scm (python-six, python-spectra, python-scipy)
(python-beautifulsoup4, python-termcolor, python-rsa, python-anyjson)
(python-whoosh, python2-pathlib2, python-pbkdf2, python-ansi2html)
(python-rfc3987, python-validate-email, python-swagger-spec-validator)
[home-page]: Update.
* gnu/packages/python-web.scm (python-sockjs-tornado, python-webob)
(python-zope-event, python-zope-testing, python-zope-testrunner)
(python-zope-i18nmessageid, python-zope-schema, python-zope-configuration)
(python-zope-proxy, python-zope-location, python-zope-security)
(python-oauth2client, python-flask-script, python-flask-migrate)
(python-flask-httpauth)[home-page]: Update.
 2017-12-24 00:00:50 +01:00
ng0
51cfdf90a1
gnu: suckless: Use HTTPS URLs. 
All suckless.org-hosted URLs are now permanent redirects to HTTPS.

* gnu/packages/suckless.scm (blind, dwm, dmenu, slock, st, surf, sent)
[source, home-page]: Use HTTPS.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-12-24 00:00:15 +01:00
Tobias Geerinckx-Rice
bbfd188f04
gnu: beets: Update to 1.4.6. 
* gnu/packages/music.scm (beets): Update to 1.4.6
 2017-12-23 23:57:59 +01:00
Tobias Geerinckx-Rice
5e84eab06b
gnu: you-get: Explicitly invoke input ffmpeg. 
The ‘ffmpeg’ input was never actually used.

* gnu/packages/video.scm (you-get)[arguments]: Add ‘qualify-input-references’
phase.
 2017-12-23 23:57:59 +01:00
Tobias Geerinckx-Rice
817e91bca9
gnu: you-get: Fix typo in synopsis. 
* gnu/packages/video.scm (you-get)[synopsis]: Fix typo.
 2017-12-23 23:57:59 +01:00
Tobias Geerinckx-Rice
8617867540
gnu: you-get: Update to 0.4.1011. 
* gnu/packages/video.scm (you-get): Update to 0.4.1011.
 2017-12-23 23:57:58 +01:00
Tobias Geerinckx-Rice
d30ac8f84b
gnu: fmt: Update to 4.1.0. 
* gnu/packages/pretty-print.scm (fmt): Update to 4.1.0
[arguments]: Set ‘CMAKE_INSTALL_LIBDIR’ in #:configure-flags.
 2017-12-23 23:57:58 +01:00
Tobias Geerinckx-Rice
405cb5ab82
gnu: ruby-highline: Update to 1.7.10. 
* gnu/packages/ruby.scm (ruby-highline): Update to 1.7.10
 2017-12-23 23:57:58 +01:00
Tobias Geerinckx-Rice
fae9dc7089
gnu: perl-io-socket-ip: Update to 0.38. 
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.38.
 2017-12-23 23:57:57 +01:00
Tobias Geerinckx-Rice
a36a917dac
gnu: perl-pod-simple: Mark up description. 
* gnu/packages/perl.scm (perl-pod-simple)[description]: Use @code and @dfn.
 2017-12-23 23:57:57 +01:00
Tobias Geerinckx-Rice
427d5677c0
gnu: perl-pod-simple: Update to 3.35. 
* gnu/packages/perl.scm (perl-pod-simple): Update to 3.35.
 2017-12-23 23:57:57 +01:00
Tobias Geerinckx-Rice
1360b6b55a
gnu: perl-mojolicious: Update to 7.59. 
* gnu/packages/perl-web.scm (perl-mojolicious): Update to 7.59.
 2017-12-23 23:57:56 +01:00
Tobias Geerinckx-Rice
b596306cd4
gnu: Add perl-net-dns-native. 
* gnu/packages/perl.scm (perl-net-dns-native): New public variable.
 2017-12-23 23:57:56 +01:00
Tobias Geerinckx-Rice
2a222b7a22
gnu: youtube-dl: Update to 2017.12.23. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.12.23.
 2017-12-23 23:57:56 +01:00
Konrad Hinsen
a08d5a07a9
gnu: Add python2-numpy-1.8. 
* gnu/packages/python.scm (python2-numpy-1.8): New variable.
 2017-12-23 22:35:53 +01:00
Konrad Hinsen
e144cbcf85
gnu: python-numpy: Reorganize patches. 
* gnu/packages/python.scm (python-numpy)[arguments]<phases>: Delete phase
"set-environment-variables".
Add phase "configure-blas-lapack". Move phase "check" after phase "install".
 2017-12-23 22:32:48 +01:00
nee
916bb9470a
gnu: Add yamagi-quake2. 
* gnu/packages/games.scm (yamagi-quake2): New variable.
 2017-12-23 22:17:03 +01:00
ng0
6b1c3efa1c
gnu: open-adventure: Fix comment about linenoise. 
* gnu/packages/games.scm (open-adventure): Fix comment.
 2017-12-23 22:15:03 +01:00
ng0
bf3be6a503
gnu: ruby: Use new home page. 
The certificate for ruby-lang.org is only valid for lists.ruby-lang.org,
the home page has moved to www.ruby-lang.org with its own certificate.

* gnu/packages/ruby.scm (ruby)[home-page]: Use 'www.ruby-lang.org'.
 2017-12-23 22:13:43 +01:00
ng0
d6ddc5ab83
gnu: java-xz: Adjust home page. 
* gnu/packages/java.scm (java-xz)[home-page]: Adjust home-page. The http part of it
is a permanent redirect to https.
 2017-12-23 22:13:41 +01:00
ng0
69b7fa3e2d
gnu: xdelta: Change to new home page. 
The previous used http://xdelta.com is linking to a parked/squatted domain.

* gnu/packages/compression.scm (xdelta)[home-page]: Use http://xdelta.org as
new home page.
 2017-12-23 22:13:38 +01:00
ng0
58891850e5
gnu: xz: Adjust the home page. 
Its http URL permanently redirects to the https one,
throwing off some basic external linters.

* gnu/packages/compression.scm (xz)[home-page]: Adjust home page.
 2017-12-23 22:13:34 +01:00
Dave Love
493937ae1f
gnu: openblas: Build with LAPACK. 
* gnu/packages/maths.scm (openblas)[arguments]: Don't disable LAPACK;
add set-extralib phase.
[inputs]: Add fortran-lib.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-12-23 20:37:40 +01:00
Efraim Flashner
6a069618ab
gnu: weechat: Disable tests on non-Intel architectures. 
* gnu/packages/irc.scm (weechat)[arguments]: Disable tests on non-Intel
architectures.
 2017-12-23 20:52:02 +02:00
Rutger Helling
44dd001d87
gnu: par2cmdline: Update to 0.8.0. 
* gnu/packages/backup.scm (par2cmdline): Update to 0.8.0.
 2017-12-23 16:25:22 +01:00
Kei Kebreau
79bffa3ec8
gnu: chicken: Update to 4.13.0. 
* gnu/packages/scheme.scm (chicken): Update to 4.13.0.
[source]: Remove obsolete patches.
* gnu/packages/patches/chicken-CVE-2017-6949.patch,
gnu/packages/patches/chicken-CVE-2017-11343.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-12-23 09:18:43 -05:00
Tobias Geerinckx-Rice
28c03b4555
gnu: dovecot: Update to 2.3.0. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.0.
* gnu/services/mail.scm (dovecot-configuration)[director-doveadm-port]
[ssl-parameters-regenerate]: Delete fields.
[ssl-protocols]: Rename to...
[ssl-min-protocol]: ...this.
[mail-log-prefix, mdbox-rotate-size, ssl-cipher-list, imap-logout-format]:
Update default values.
* doc/guix.texi (Mail Services): Reflect the above changes to the service.
 2017-12-23 07:11:14 +01:00
Tobias Geerinckx-Rice
2f3800e53e
gnu: ruby: Use HTTPS for home pages. 
* gnu/packages/ruby.scm (ruby-hoe, bundler, ruby-rjb, ruby-libxml)
(ruby-permutation, ruby-gettext, ruby-test-unit, ruby-pry, ruby-tzinfo)
(ruby-tzinfo-data, ruby-term-ansicolor, ruby-pstree, ruby-json, ruby-rack)
(ruby-yard, ruby-ansi, ruby-rubytest, ruby-brass, ruby-qed, ruby-ae)
(ruby-lemon, ruby-rubytest-cli, ruby-hashery)[home-page]: Use HTTPS.
 2017-12-23 05:49:47 +01:00
Tobias Geerinckx-Rice
925131916d
gnu: ruby-tzinfo-data: Update to 1.2017.3. 
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2017.3
 2017-12-23 05:25:41 +01:00
Tobias Geerinckx-Rice
4237af8529
gnu: ruby-tzinfo: Update to 1.2.4. 
* gnu/packages/ruby.scm (ruby-tzinfo): Update to 1.2.4
 2017-12-23 05:25:32 +01:00
Tobias Geerinckx-Rice
484d68f27c
gnu: ocaml-utop: Update to 2.0.2. 
* gnu/packages/ocaml.scm (ocaml-utop): Update to 2.0.2
 2017-12-23 05:09:11 +01:00
Tobias Geerinckx-Rice
0e43721f32
gnu: ocaml-jbuilder: Update to 1.0+beta16. 
* gnu/packages/ocaml.scm (ocaml-jbuilder): Update to 1.0+beta16
 2017-12-23 05:09:11 +01:00
Tobias Geerinckx-Rice
36dba63b83
gnu: ocaml-ssl: Expand description. 
* gnu/packages/ocaml.scm (ocaml-ssl)[description]: Expand based on Debian's.
 2017-12-23 05:09:10 +01:00
Tobias Geerinckx-Rice
26b438e064
gnu: ocaml-ssl: Update to 0.5.5. 
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.5
 2017-12-23 05:09:10 +01:00
Tobias Geerinckx-Rice
7b20cd575e
gnu: ocaml-bitstring: Update to 2.1.1. 
* gnu/packages/ocaml.scm (ocaml-bitstring): Update to 2.1.1
 2017-12-23 05:09:09 +01:00
Tobias Geerinckx-Rice
50786325cd
gnu: fish: Mark up description. 
* gnu/packages/shells.scm (fish)[description]: Use @command{}.
 2017-12-23 05:09:09 +01:00
Tobias Geerinckx-Rice
66e86f2681
gnu: protobuf: Update to 3.5.1. 
* gnu/packages/protobuf.scm (protobuf): Update to 3.5.1.
 2017-12-23 04:48:17 +01:00
Kei Kebreau
84958de120
gnu: windowmaker: Enable xinerama support. 
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Add libxinerama.
 2017-12-22 18:48:23 -05:00
Mason Hock
85f075a057
gnu: lilypond: Update to 2.19.80. 
* gnu/packages/music.scm (lilypond): Update to 2.19.80.
 2017-12-22 22:16:53 +01:00
Christopher Baines
3faa422d5f
gnu: Build wiredtiger with snappy support. 
This is probably necessary to get the MongoDB package in Guix to successfully
use the Guix wiredtiger package, as MongoDB it uses wiredtiger with snappy by
default.

* gnu/packages/databases.scm (wiredtiger)[arguments]: Add --enable-snappy to
  #:configure-flags.
  [inputs]: Add snappy.
 2017-12-22 19:23:53 +00:00
Tobias Geerinckx-Rice
58087bdddc
gnu: fish: Update to 2.7.1. 
* gnu/packages/shells.scm (fish): Update to 2.7.1.
 2017-12-22 19:48:44 +01:00
Kei Kebreau
9e3a8ed0eb
gnu: python-pillow: Update to 4.3.0. 
* gnu/packages/python.scm (python-pillow): Update to 4.3.0.
[propagated-inputs]: Add python-olefile.
* gnu/packages/patches/python-pillow-freetype-2.7-test-failure.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2017-12-22 11:49:43 -05:00
Kei Kebreau
3a1f26ff75
gnu: Add python-olefile. 
* gnu/packages/python.scm (python-olefile, python2-olefile): New variables.
 2017-12-22 11:49:28 -05:00
Leo Famulari
0054564b85
gnu: mariadb: Update to 10.1.29. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.29.
 2017-12-22 10:53:50 -05:00
Roel Janssen
b9bf2b8985
gnu: Update r-mutationalpatterns to 1.4.2. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.2.
 2017-12-22 12:23:06 +01:00
Rutger Helling
d633f2f62a
gnu: mutter: Add xorg-xserver-xwayland input. 
* gnu/packages/gnome.scm (mutter)[inputs]: Add xorg-server-xwayland.
[arguments]: Add '--with-xwayland-path' to #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-22 09:55:01 +01:00
Konrad Hinsen
de2032b912
gnu: Add python-activepapers. 
* gnu/packages/python.scm (python-activepapers, python2-activepapers):
New variables.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2017-12-22 09:46:13 +01:00
Ricardo Wurmus
5145001a15
gnu: Add meandmyshadow. 
* gnu/packages/games.scm (meandmyshadow): New variable.
 2017-12-22 07:56:55 +01:00
Ricardo Wurmus
5f66a0a78b
gnu: emacs-ivy: Install documentation. 
* gnu/packages/emacs.scm (emacs-ivy)[arguments]: Add phase "install-doc".
[native-inputs]: Add texinfo.
 2017-12-22 07:56:55 +01:00
Ricardo Wurmus
a837423412
gnu: emacs-ivy: Update to 0.10.0. 
* gnu/packages/emacs.scm (emacs-ivy): Update to 0.10.0.
 2017-12-22 07:56:54 +01:00
Tobias Geerinckx-Rice
8c4ca853e0
gnu: Add plzip. 
* gnu/packages/compression.scm (plzip): New public variable.
 2017-12-22 01:06:03 +01:00
Tobias Geerinckx-Rice
2e3b1a92f4
gnu: Add lzlib. 
* gnu/packages/compression.scm (lzlib): New public variable.
 2017-12-22 01:06:02 +01:00
Tobias Geerinckx-Rice
5dca4c76ac
gnu: Add clzip. 
* gnu/packages/compression.scm (clzip): New public variable.
 2017-12-22 01:06:02 +01:00
Tobias Geerinckx-Rice
34e8cf225c
gnu: Add lunzip. 
* gnu/packages/compression.scm (lunzip): New public variable.
 2017-12-22 01:06:02 +01:00
Tobias Geerinckx-Rice
82d57f126c
gnu: Add hungrycat. 
* gnu/packages/admin.scm (hungrycat): New public variable.
 2017-12-22 01:06:01 +01:00
Tobias Geerinckx-Rice
e807306324
gnu: zstd: Use default ‘check’ target. 
* gnu/packages/compression.scm (zstd)[arguments]: Don't set #:test-target.
 2017-12-22 01:06:01 +01:00
Leo Famulari
9c3ad422d0
gnu: libgxps: Fix CVE-2017-11590. 
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (libgxps)[source]: Use it.
 2017-12-21 14:17:35 -05:00
Leo Famulari
5dc0e0b055
gnu: imagemagick: Update to 6.9.9-27. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-27.
 2017-12-21 13:23:02 -05:00
Leo Famulari
382e5f1947
gnu: gnupg: Update to 2.2.4. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.4.
 2017-12-21 12:59:56 -05:00
Tobias Geerinckx-Rice
00840ee004
gnu: weechat: Run tests. 
* gnu/packages/irc.scm (weechat)[native-inputs]: Add cpputest.
[arguments]: Add ‘-DENABLE_TESTS=ON’ to #:configure-flags.  Add
‘disable-failing-tests’ phase to do just that.  Run the others.
 2017-12-21 18:43:01 +01:00
Tobias Geerinckx-Rice
f45e314e19
gnu: zstd: Disable unrelated format support. 
* gnu/packages/compression.scm (zstd)[arguments]: Add HAVE_LZMA=0 to
 2017-12-21 18:43:01 +01:00
Tobias Geerinckx-Rice
5308f15b43
gnu: zstd: Update to 1.3.3. 
* gnu/packages/compression.scm (zstd): Update to 1.3.3.
 2017-12-21 18:43:01 +01:00
Leo Famulari
806e891e85
gnu: gnupg@2.0: Superseded by the latest GnuPG. 
The 2.0 series of GnuPG will stop receiving upstream support on
2017-12-31. From the release announcement of GnuPG 2.2.0:

"This release marks the start of a new long term support series
to replace the 2.0.x series which will reach end-of-life on 2017-12-31."

https://lists.gnupg.org/pipermail/gnupg-announce/2017q3/000413.html

* gnu/packages/gnupg.scm (gnupg-2.0)[properties]: New field.
 2017-12-21 12:37:25 -05:00
Leo Famulari
0c9c9526bb
gnu: libxslt: Fix CVE-2017-5029 and re-apply the fix for CVE-2016-4738. 
This is a followup to commit 2663c38826.

* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
* gnu/packages/patches/libxslt-CVE-2017-5029.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-12-21 12:28:47 -05:00
Leo Famulari
2a0e3d1635
gnu: libarchive: Fix CVE-2017-14502. 
* gnu/packages/patches/libarchive-CVE-2017-14502.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (libarchive-3.3.2)[source]: Use it.
 2017-12-21 12:28:43 -05:00
Konrad Hinsen
c521c8f1a4
gnu: Add python-tempdir. 
* gnu/packages/python.scm (python-tempdir, python2-tempdir): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-12-21 10:44:39 +01:00
Leo Famulari
ce16d312c6
gnu: libexif: Fix CVE-2017-7544. 
* gnu/packages/patches/libexif-CVE-2017-7544.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/photo.scm (feh)[source]: Use it.
 2017-12-21 03:24:55 -05:00
Efraim Flashner
417f3d494f
gnu: xboing: Fix CVE-2004-0149. 
* gnu/packages/patches/xboing-CVE-2004-0149: New file.
* gnu/packages/games.scm (xboing)[source]: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-12-21 09:04:34 +02:00
Leo Famulari
dab2542f84
gnu: mupdf: Update to 1.12.0 [fixes CVE-2017-15369]. 
* gnu/packages/pdf.scm (mupdf): Update to 1.12.0.
[source]: Remove obsolete patches.
[inputs]: Add freeglut.
* gnu/packages/patches/mupdf-CVE-2017-14685.patch,
gnu/packages/patches/mupdf-CVE-2017-14686.patch,
gnu/packages/patches/mupdf-CVE-2017-14687.patch,
gnu/packages/patches/mupdf-CVE-2017-15587.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Update and
rename to...
* gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch: ... new file.
 2017-12-21 02:00:59 -05:00
Tobias Geerinckx-Rice
91213c384b
gnu: weechat: Update to 2.0.1. 
* gnu/packages/irc.scm (weechat): Update to 2.0.1.
 2017-12-21 03:20:11 +01:00
Tobias Geerinckx-Rice
fa79a908bb
gnu: Add perl-test-requiresinternet. 
* gnu/packages/perl-check.scm (perl-test-requiresinternet): New public
variable.
 2017-12-21 03:20:11 +01:00
Leo Famulari
dacd8cf2e8
gnu: links: Fix-CVE-2017-11114. 
* gnu/packages/patches/links-CVE-2017-11114.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web-browsers.scm (links)[source]: Use it.
 2017-12-20 20:08:35 -05:00
Mark H Weaver
66df43b9ae
gnu: linux-libre: Update to 4.14.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.8.
(%linux-libre-hash): Update hash.
 2017-12-20 18:28:36 -05:00
Mark H Weaver
0786e4bd12
gnu: linux-libre@4.9: Update to 4.9.71. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.71.
 2017-12-20 18:27:48 -05:00
Mark H Weaver
770635e11d
gnu: linux-libre@4.4: Update to 4.4.107. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.107.
 2017-12-20 18:27:08 -05:00
Ricardo Wurmus
4305176096
gnu: microscheme: Fix home page. 
* gnu/packages/avr.scm (microscheme)[home-page]: Use GitHub project page.

Fixes <https://bugs.gnu.org/29791>.
 2017-12-20 23:18:24 +01:00
Leo Famulari
0e06bec250
gnu: gpgme: Build with the latest GnuPG. 
* gnu/packages/gnupg.scm (gpgme)[inputs]: Use the latest gnupg package.
[arguments]: Keep a reference to the gnupg package used for build.
 2017-12-20 16:41:41 -05:00
Leo Famulari
e6f63412c9
gnu: python-pygpgme: Use GnuPG 1 for the test suite. 
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme)[inputs]: Use gnupg-1
and make it a native-input.
 2017-12-20 15:13:22 -05:00
Leo Famulari
5965b08307
gnu: libassuan: Update to 2.5.1. 
* gnu/packages/gnupg.scm (libassuan): Update to 2.5.1.
 2017-12-20 15:11:27 -05:00
Tobias Geerinckx-Rice
48a9654ad6
gnu: exim: Update to 4.90. 
* gnu/packages/mail.scm (exim): Update to 4.90.
 2017-12-20 16:50:28 +01:00
Leo Famulari
8bc6956bbd
gnu: rng-tools: Update to 6.1. 
Rng-tools development appears to have moved to GitHub [0]:

"NOTE: The rng-tools project hasn't seen updates in some time, but is
still in active use. To facilitate ongoing development, the rng-tools
project is moved to here:
https://github.com/nhorman/rng-tools"

[0]
https://sourceforge.net/p/gkernel/wiki/Home/

* gnu/packages/linux.scm (rng-tools): Update to 6.1.
[source]: Use new upstream URL and give a descriptive file-name.
[arguments]: Add a 'bootstrap' phase.
[native-inputs]: Add autoconf, automake, and pkg-config.
[inputs]: Add sysfsutils.
 2017-12-20 03:53:52 -05:00
Rutger Helling
09a91adcf8
gnu: libressl: Update to 2.6.4. 
* gnu/packages/tls.scm (libressl): Update to 2.6.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-12-20 02:56:55 -05:00
Leo Famulari
afcbc348a3
gnu: babl: Update to 0.1.38. 
* gnu/packages/gimp.scm (babl): Update to 0.1.38.
 2017-12-20 01:40:14 -05:00
Leo Famulari
74c96b0b09
gnu: webkitgtk: Update to 2.18.4 [fixes CVE-2017-{7156,13856,13866,13870}]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.4.
 2017-12-19 14:52:15 -05:00
Ricardo Wurmus
57ae890fb3
gnu: r-htmltable: Update to 1.11.0. 
* gnu/packages/web.scm (r-htmltable): Update to 1.11.0.
[propagated-inputs]: Add r-dplyr, r-htmltools, r-rstudioapi, and r-tidyr.
 2017-12-19 20:35:08 +01:00
Ricardo Wurmus
aead9e1bc5
gnu: r-testthat: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.0.
[propagated-inputs]: Add r-cli, r-rlang, and r-withr.
 2017-12-19 20:35:08 +01:00
Ricardo Wurmus
2976f304e2
gnu: Add r-cli. 
* gnu/packages/cran.scm (r-cli): New variable.
 2017-12-19 20:35:08 +01:00
Ricardo Wurmus
d03949449a
gnu: r-hardyweinberg: Update to 1.5.9. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.5.9.
[propagated-inputs]: Add r-rsolnp.
 2017-12-19 20:35:08 +01:00
Ricardo Wurmus
cb8b4c1196
gnu: Add r-rsolnp. 
* gnu/packages/cran.scm (r-rsolnp): New variable.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus
02cdb45f34
gnu: Add r-truncnorm. 
* gnu/packages/cran.scm (r-truncnorm): New variable.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus
5378f38332
gnu: r-curl: Update to 3.1. 
* gnu/packages/web.scm (r-curl): Update to 3.1.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus
f9f1291bc0
gnu: r-ade4: Update to 1.7-10. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-10.
[propagated-inputs]: Add r-mass.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus
83b0e1d53f
gnu: r-registry: Update to 0.5. 
* gnu/packages/statistics.scm (r-registry): Update to 0.5.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus
d2dc69b8be
gnu: r-iterators: Update to 1.0.9. 
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.9.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus
4a1945da16
gnu: r-segmented: Update to 0.5-3.0. 
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-3.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus
0a1b447e2b
gnu: r-rprojroot: Update to 1.3-1. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus
102a271870
gnu: r-rcpparmadillo: Update to 0.8.300.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus
0300cacae1
gnu: r-plotrix: Update to 3.7. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus
004e108aad
gnu: r-git2r: Update to 0.20.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.20.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus
069e3b5c09
gnu: r-backports: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.2.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus
1028f9ef11
gnu: r-yaml: Update to 2.1.16. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.16.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus
de3fd9253f
gnu: r-reshape2: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus
d0c1a402db
gnu: r-digest: Update to 0.6.13. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.13.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus
2960f9658f
gnu: r-vcd: Update to 1.4-4. 
* gnu/packages/cran.scm (r-vcd): Update to 1.4-4.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus
f46a74e9f0
gnu: r-proxy: Update to 0.4-20. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-20.
 2017-12-19 20:35:04 +01:00
Ricardo Wurmus
b9e8a5c594
gnu: r-biomart: Update to 2.34.1. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.1.
[propagated-inputs]: Add r-httr.
 2017-12-19 20:35:04 +01:00
Ricardo Wurmus
11e42209a8
gnu: r-gviz: Update to 1.22.2. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.2.
 2017-12-19 20:35:04 +01:00
Ricardo Wurmus
2ccd850192
gnu: r-gqtlstats: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.10.1.
 2017-12-19 20:35:04 +01:00
Ricardo Wurmus
28d25d037e
gnu: r-rtracklayer: Update to 1.38.2. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.2.
 2017-12-19 20:35:04 +01:00
Ricardo Wurmus
d41f678420
gnu: r-limma: Update to 3.34.4. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4.
 2017-12-19 20:35:03 +01:00
Ricardo Wurmus
ab0dd8ac10
gnu: r-edger: Update to 3.20.2. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.2.
 2017-12-19 20:35:03 +01:00
Ricardo Wurmus
7665fb39f5
gnu: r-biocstyle: Update to 2.6.1. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1.
 2017-12-19 20:35:03 +01:00
Ricardo Wurmus
756ac7254c
gnu: r-dexseq: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2.
 2017-12-19 20:35:03 +01:00
Ricardo Wurmus
8d11ef4470
gnu: r-vegan: Update to 2.4-5. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5.
 2017-12-19 20:35:02 +01:00
Danny Milosavljevic
68f1869cfc
gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache generation. 
* gnu/packages/xfce.scm (xfce4-session)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
 2017-12-19 18:11:56 +01:00
Kei Kebreau
a8db968fa4
gnu: wxmaxima: Update to 17.10.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
 2017-12-19 11:26:16 -05:00
nee
7a070f020b
gnu: Add quakespasm. 
* gnu/packages/games.scm (quakespasm): New variable.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2017-12-19 10:21:14 -05:00
Ricardo Wurmus
0464dc1c1e
gnu: gajim: Update to 0.16.9. 
* gnu/packages/messaging.scm (gajim): Update to 0.16.9.
 2017-12-19 13:17:17 +01:00
Ricardo Wurmus
f3b985fa61
gnu: python-nbxmpp: Update to 0.6.1. 
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.1.
 2017-12-19 13:17:16 +01:00
Ricardo Wurmus
21bc352664
gnu: dino: Update to 0.0-3.f25fadde2. 
* gnu/packages/messaging.scm (dino): Update to 0.0-3.f25fadde2.
 2017-12-19 13:16:53 +01:00
Ricardo Wurmus
79b43bc3a1
gnu: pcsc-lite: Update to 1.8.23. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23.
[arguments]: Disable libsystemd check.
 2017-12-19 13:16:42 +01:00
Ricardo Wurmus
b28e05d45e
gnu: antiword: Fix broken embedded directory name. 
* gnu/packages/textutils.scm (antiword)[arguments]: Replace "configure" phase
to substitute reference to "/usr/share/antiword" with the actual directory in
the store.
 2017-12-19 13:16:36 +01:00
Roel Janssen
fb6ca493f1
gnu: Update gwl to 0.1.1. 
* gnu/packages/package-management.scm (gwl): Update to 0.1.1.
 2017-12-19 12:27:43 +01:00
Efraim Flashner
ba1ba9fcbd
gnu: emulation-station: Add missing file-name field. 
* gnu/packages/games.scm (emulation-station)[source]: Add missing
file-name field.
 2017-12-19 12:19:04 +02:00
Roel Janssen
28fc96cb1e
gnu: Update r-cowplot to 0.9.2. 
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2.
 2017-12-19 10:47:19 +01:00
Leo Famulari
4a408d847e
gnu: mpd: Update to 0.20.13. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.13.
 2017-12-19 02:28:06 -05:00
Leo Famulari
4fad6598c6
gnu: keepassxc: Update to 2.2.4. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.2.4.
 2017-12-19 01:18:24 -05:00
Leo Famulari
4498cbd7ad
gnu: GnuPG pinentry: Update to 1.1.0. 
* gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3,
pinentry-qt): Update to 1.1.0.
 2017-12-18 23:25:20 -05:00
Mark H Weaver
7a6a08c945
gnu: linux-libre: Update to 4.14.7. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.7.
(%linux-libre-hash): Update hash.
 2017-12-18 19:52:02 -05:00
Mark H Weaver
48e1f44415
gnu: linux-libre@4.9: Update to 4.9.70. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.70.
 2017-12-18 19:51:22 -05:00
Mark H Weaver
86300e61b9
gnu: linux-libre@4.4: Update to 4.4.106. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.106.
 2017-12-18 19:50:39 -05:00
Marius Bakke
98bd11cfe7
gnu: termite: Update to 13. 
* gnu/packages/terminals.scm (termite): Update to 13.
 2017-12-19 01:37:22 +01:00
Marius Bakke
972fa87039
gnu: pcsc-lite: Update to 1.8.23. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23.
[arguments]<#:configure-flags>: Add "--disable-libsystemd".
[license]: Adjust to removed sd-daemon files.
 2017-12-19 01:30:14 +01:00
Marius Bakke
937790df9d
gnu: qemu: Update to 2.10.2. 
* gnu/packages/patches/qemu-CVE-2017-15118.patch,
gnu/packages/patches/qemu-CVE-2017-15119.patch,
gnu/packages/patches/qemu-CVE-2017-15268.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.2.
[source](patches): Remove obsolete.
 2017-12-19 01:15:09 +01:00
Marius Bakke
2ea3333504
gnu: libjpeg-turbo: Update to 1.5.3. 
* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.3.
 2017-12-18 23:25:20 +01:00
Marius Bakke
7bd9af7376
gnu: libsodium: Update to 1.0.16. 
* gnu/packages/crypto.scm (libsodium): Update to 1.0.16.
 2017-12-18 23:25:20 +01:00
Marius Bakke
8e9b3c6647
gnu: expect: Update to 5.45.3. 
* gnu/packages/tcl.scm (expect): Update to 5.45.3.
 2017-12-18 23:25:20 +01:00
Kei Kebreau
63dc763816
gnu: deutex: Update to 5.1.0. 
* gnu/packages/games.scm (deutex): Update to 5.1.0.
 2017-12-18 17:19:58 -05:00
Kei Kebreau
147d42fc03
gnu: emacspeak: Update to 47.0. 
* gnu/packages/emacs.scm (emacspeak): Update to 47.0.
[source]: Remove snippet.
[arguments]: Set SHELL environment variable.
 2017-12-18 16:50:45 -05:00
Efraim Flashner
91675d5082
gnu: rsync: Patch CVE-2017-{16548,17433,17434}. 
* gnu/packages/rsync.scm (rsync)[source]: Add patches.
[properties]: Mark CVE-2017-15994 as not relevant.
* gnu/packages/patches/rsync-CVE-2017-16548.patch,
gnu/packages/patches/rsync-CVE-2017-17433.patch,
gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-12-18 22:53:46 +02:00
Ludovic Courtès
b50a9cc008
gnu: psm: Update home page URL. 
* gnu/packages/linux.scm (psm)[home-page]: Update.
[source](uri): Use it.
 2017-12-18 17:52:58 +01:00
Ludovic Courtès
4e9dfe399b
gnu: Fix ambiguous 'zip' reference. 
* gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1).
 2017-12-18 17:52:58 +01:00
Tobias Geerinckx-Rice
af8c547d33
gnu: claws-mail: Update to 3.16.0. 
* gnu/packages/mail.scm (claws-mail): Update to 3.16.0.
 2017-12-18 15:22:08 +01:00
Ricardo Wurmus
f1a2b1cb20
gnu: r-seurat: Update to 2.1.0. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0.
[propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica,
r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr,
r-rcppeigen, r-fastica.
 2017-12-18 12:01:35 +01:00
Ricardo Wurmus
fff9b88439
gnu: Add r-diffusionmap. 
* gnu/packages/graph.scm (r-diffusionmap): New variable.
 2017-12-18 12:01:35 +01:00
Ricardo Wurmus
007f6d9885
gnu: Add r-ggjoy. 
* gnu/packages/cran.scm (r-ggjoy): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus
f90018e568
gnu: Add r-ggridges. 
* gnu/packages/cran.scm (r-ggridges): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus
ae3f207951
gnu: Add r-scatterplot3d. 
* gnu/packages/cran.scm (r-scatterplot3d): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus
15ef07f00e
gnu: Add r-sdmtools. 
* gnu/packages/cran.scm (r-sdmtools): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus
bf025ff6f2
gnu: Add r-dtw. 
* gnu/packages/cran.scm (r-dtw): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus
ae16426007
gnu: Add r-ica. 
* gnu/packages/cran.scm (r-ica): New variable.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus
8271b8d22a
gnu: r-seurat: Fix ModularityOptimizer.jar. 
* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class
attribute in manifest.
 2017-12-18 12:01:34 +01:00
Ricardo Wurmus
b6313997ad
gnu: qmidiarp: Update to 0.6.5. 
* gnu/packages/music.scm (qmidiarp): Update to 0.6.5.
 2017-12-18 12:01:33 +01:00
Ricardo Wurmus
cf31d5e114
gnu: Add noise-repellent. 
* gnu/packages/audio.scm (noise-repellent): New variable.
 2017-12-18 12:01:33 +01:00
Ricardo Wurmus
13edf1b9ea
gnu: Add aj-snapshot. 
* gnu/packages/music.scm (aj-snapshot): New variable.
 2017-12-18 12:01:33 +01:00