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Author SHA1 Message Date
Tobias Geerinckx-Rice
6493d0eec4
gnu: htop: Update to 3.0.2. 
* gnu/packages/admin.scm (htop): Update to 3.0.2.
[native-inputs]: Remove python-wrapper.
 2020-09-15 14:57:07 +02:00
Tobias Geerinckx-Rice
9d1af83e0b
import: cpan: Export cpan-release-module. 
* guix/import/cpan.scm: Fix typo.
 2020-09-15 14:57:06 +02:00
Gabriel Arazas
1c21468c7a
gnu: Add goxel. 
* gnu/packages/graphics.scm (goxel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-15 14:40:20 +02:00
Ludovic Courtès
b911d65474
authenticate: Encode strings as ISO-8859-1. 
Fixes <https://bugs.gnu.org/43421>.

* guix/scripts/authenticate.scm (read-command): Decode strings as
ISO-8859-1, not UTF-8.
(guix-authenticate)[send-reply]: Encode strings as ISO-8859-1, not
UTF-8.
* tests/guix-authenticate.sh: Add test.
 2020-09-15 14:40:20 +02:00
Ludovic Courtès
1b157bbef0
services: bitlbee: Support libpurple plugins. 
* gnu/services/messaging.scm (bitlbee-shepherd-service): Pass
PURPLE_PLUGIN_PATH as #:environment-variables.
 2020-09-15 14:40:20 +02:00
Pierre Neidhardt
6e05adbb8f
gnu: sbcl-trivial-clipboard: Update to 20200904. 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-clipboard): Update to 20200904.
 2020-09-15 13:26:00 +02:00
Efraim Flashner
a8360892d7
gnu: waybar: Fix build. 
Reported by bdju.

* gnu/packages/pretty-print.scm (fmt-6): New variable.
* gnu/packages/wm.scm (waybar)[inputs]: Replace fmt with fmt-6.
 2020-09-15 12:02:28 +03:00
Nicolas Goaziou
b10edcb9d4
gnu: emacs-org: Update to 9.4. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.4.
(emacs-org-contrib): Update to 20200914.
 2020-09-15 09:21:15 +02:00
Efraim Flashner
af4c633bbb
gnu: roffit: Adjust install phase. 
* gnu/packages/groff.scm (roffit)[arguments]: Remove make-flags. Remove
custom 'pre-install phase. Replace 'install phase to also install
manpage.
 2020-09-15 09:41:37 +03:00
Efraim Flashner
8aea855ac1
gnu: roffit: Wrap binary. 
Fixes <https://debbugs.gnu.org/43306>.

* gnu/packages/groff.scm (roffit)[arguments]: Add 'wrap-binary phase to
help find perl libraries.
 2020-09-15 09:37:18 +03:00
Ricardo Wurmus
818237d947
gnu: bsequencer: Update to 1.8.0. 
* gnu/packages/music.scm (bsequencer): Update to 1.8.0.
 2020-09-15 01:40:54 +02:00
Oleg Pykhalov
f6dfe42129
services: docker: Fix service definition. 
This commit follows a404716d41.

* gnu/services/docker.scm
(docker-configuration)[docker-cli]: New record field.
(docker-service-type): Use this.
* doc/guix.texi (Miscellaneous Services)[Docker Service]: Document this.
 2020-09-15 01:10:55 +03:00
Prafulla Giri
8ba70a6ad3
gnu: kdenlive: Change source URL to follow permanent redirection. 
* gnu/packages/kde.scm (kdenlive)[source]: Change url to follow
permanent redirection.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 23:04:11 +02:00
Prafulla Giri
e33a1e546a
gnu: kde: kdenlive: Make breeze theme available at runtime. 
* gnu/packages/kde.scm (kdenlive):
[inputs]: Add breeze.
[arguments]: In wrap-program phase, add XDG_DATA_DIRS to include
the 'share' sub-directory of the package breeze.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 23:04:11 +02:00
Sébastien Lerique
0d63abebd1
gnu: Add ripmime. 
* gnu/packages/mail.scm (ripmime): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-09-14 23:04:10 +02:00
Ludovic Courtès
6cb573889b
gnu: guix: Update to 846403e. 
* gnu/packages/package-management.scm (guix): Update to 846403e.
 2020-09-14 23:04:10 +02:00
Efraim Flashner
a404716d41
services: docker: Fix service definition. 
This is a follow-up to 8422a67dc1.

* gnu/services/docker.scm (docker-service-type): Use a composed list for
packages in profile-service-type.
 2020-09-14 23:22:34 +03:00
Efraim Flashner
276ab588a8
gnu: maven-compiler-plugin: Don't use unstable tarball. 
* gnu/packages/maven.scm (maven-compiler-plugin)[source]: Download using
git-fetch.
 2020-09-14 23:13:22 +03:00
Efraim Flashner
7cd50ad7fa
gnu: maven-resources-plugin: Don't use unstable tarball. 
* gnu/packages/maven.scm (maven-resources-plugin)[source]: Download
using git-fetch.
 2020-09-14 23:13:22 +03:00
Efraim Flashner
05cd8837eb
gnu: maven-jar-plugin: Don't use unstable tarball. 
* gnu/packages/maven.scm (maven-jar-plugin)[source]: Download using
git-fetch.
 2020-09-14 23:13:22 +03:00
Efraim Flashner
819ead3592
gnu: java-hdrhistogram: Don't use unstable tarball. 
* gnu/packages/java.scm (java-hdrhistogram)[source]: Download using
git-fetch.
[arguments]: Add phase to make source writable.
 2020-09-14 23:13:22 +03:00
Ricardo Wurmus
3159fcf145
gnu: r-wgcna: Move to (gnu packages bioconductor). 
This is a follow-up to commit 6e0ab26f31.

* gnu/packages/cran.scm (r-wgcna): Move from here...
* gnu/packages/bioconductor.scm (r-wgcna): ...to here.
 2020-09-14 21:40:15 +02:00
zimoun
3292f6eda0
gnu: r-fithic: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-fithic): Move from here...
* gnu/packages/bioconductor.scm (r-fithic): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:15 +02:00
zimoun
7df42d3774
gnu: r-hitc: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-hitc): Move from here...
* gnu/packages/bioconductor.scm (r-hitc): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:15 +02:00
zimoun
63b75c01c2
gnu: r-hdf5array: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-hdf5array): Move from here...
* gnu/packages/bioconductor.scm (r-hdf5array): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:40:10 +02:00
zimoun
c61268c1b7
gnu: r-rhdf5lib: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5lib): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:33 +02:00
zimoun
8863c14cd8
gnu: r-beachmat: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-beachmat): Move from here...
* gnu/packages/bioconductor.scm (r-beachmat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:30 +02:00
zimoun
916a3e59ab
gnu: r-singlecellexperiment: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:27 +02:00
zimoun
6b1946b334
gnu: r-scater: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-scater): Move from here...
* gnu/packages/bioconductor.scm (r-scater): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:24 +02:00
zimoun
1193b77e60
gnu: r-scran: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-scran): Move from here...
* gnu/packages/bioconductor.scm (r-scran): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:22 +02:00
zimoun
8c7c6db408
gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:19 +02:00
zimoun
b3a998374c
gnu: r-rgraphviz: Move to (gnu packages bioconductor). 
* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:16 +02:00
zimoun
6e0ab26f31
gnu: r-preprocesscore: Move to (gnu packages bioconductor). 
* gnu/packages/statistics.scm (r-preprocesscore): Move from here...
* gnu/packages/bioconductor.scm (r-preprocesscore): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:12 +02:00
zimoun
f4d920b9f7
gnu: r-fourcseq: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-fourcseq): Move from here...
* gnu/packages/bioconductor.scm (r-fourcseq): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-14 21:39:00 +02:00
Ricardo Wurmus
62881beb4d
gnu: r-rgraphviz: Build reproducibly. 
Fixes <https://bugs.gnu.org/43398>.

* gnu/packages/graph.scm (r-rgraphviz)[arguments]: Add phase
"make-reproducible".
 2020-09-14 21:25:17 +02:00
Ricardo Wurmus
d60739dff2
gnu: r-quantreg: Update to 5.67. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.67.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
2feb943558
gnu: r-cowplot: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
90ff99d9c5
gnu: r-rcpparmadillo: Update to 0.9.900.3.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
995641369e
gnu: r-ggdendro: Update to 0.1.22. 
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
7e2aa0efba
gnu: r-stringi: Update to 1.5.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.5.3.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
98f76dbcfb
gnu: r-mass: Update to 7.3-53. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
1c1b941902
gnu: r-diversitree: Update to 0.9-14. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
8731d274ae
gnu: r-seurat: Update to 3.2.1. 
* gnu/packages/cran.scm (r-seurat): Update to 3.2.1.
[propagated-inputs]: Remove r-ape; add r-matrixstats.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
e6711231ed
gnu: r-rfast: Update to 2.0.1. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
0982ffa898
gnu: r-scatterpie: Update to 0.1.5. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
df2210be8b
gnu: r-forecast: Update to 8.13. 
* gnu/packages/cran.scm (r-forecast): Update to 8.13.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
ad10a45225
gnu: r-gamlss: Update to 5.2-0. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
bf37420fe7
gnu: r-parameters: Update to 0.8.5. 
* gnu/packages/cran.scm (r-parameters): Update to 0.8.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
515b746945
gnu: r-systemfonts: Update to 0.3.1. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
3f67fb11cf
gnu: r-dalex: Update to 2.0. 
* gnu/packages/cran.scm (r-dalex): Update to 2.0.
 2020-09-14 19:07:46 +02:00