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Author SHA1 Message Date
Tobias Geerinckx-Rice
880d2b9e31
gnu: iir: Update to 1.9.4. 
* gnu/packages/audio.scm (iir): Update to 1.9.4.
 2023-01-22 01:00:00 +01:00
Tobias Geerinckx-Rice
a166edbf93
gnu: bind: Update to 9.16.37 [security fixes]. 
This release contains fixes for CVE-2022-3094, CVE-2022-3736,
and CVE-2022-3924.

* gnu/packages/dns.scm (isc-bind): Update to 9.16.37.
 2023-01-22 01:00:00 +01:00
Ricardo Wurmus
0d713e0140
gnu: Add python-slamdunk. 
* gnu/packages/bioinformatics.scm (python-slamdunk): New variable.
 2023-01-25 15:24:48 +01:00
Guillaume Le Vaillant
ba1b61a72d
gnu: txr: Update to 284. 
* gnu/packages/lisp.scm (txr): Update to 284.
 2023-01-25 10:51:26 +01:00
Paul A. Patience
b0df8de60f
gnu: Add cl-clingon. 
* gnu/packages/lisp-xyz.scm (sbcl-clingon, cl-clingon, ecl-clingon): New
  variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-01-25 10:51:26 +01:00
Paul A. Patience
0b9aea07d2
gnu: Add cl-trivial-octet-streams. 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-octet-streams,
  cl-trivial-octet-streams, ecl-trivial-octet-streams): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-01-25 10:51:26 +01:00
Paul A. Patience
9cebf247e7
gnu: cl-coalton: Update to 0.0.1-3.ba75806. 
* gnu/packages/lisp-xyz.scm (sbcl-coalton): Update to 0.0.1-3.ba75806.
  [source]: Add cl- prefix to file-name.
  [inputs]: Remove sbcl-global-vars, sbcl-serapeum and sbcl-trivia, and
  add sbcl-split-sequence and sbcl-trivial-garbage.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-01-25 10:51:26 +01:00
Efraim Flashner
b7bff3a76f
gnu: diffoscope: Replace cdrtools with cdrkit-libre. 
* gnu/packages/diffoscope.scm (diffoscope)[native-inputs]: Remove
cdrtools. Add cdrkit-libre.
 2023-01-25 09:46:37 +02:00
Efraim Flashner
e71dc64e23
gnu: diffoscope: Use newer llvm. 
* gnu/packages/diffoscope.scm (diffoscope)[source]: Remove patch.
[native-inputs]: Replace llvm-9 with llvm.
* gnu/packages/patches/diffoscope-fix-llvm-test.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2023-01-25 09:45:30 +02:00
Mădălin Ionel Patrașcu
718223c58c
gnu: Add python-phylophlan. 
* gnu/packages/bioinformatics.scm (python-phylophlan): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
 2023-01-25 00:22:53 +01:00
Mădălin Ionel Patrașcu
ed56d2a1c2
gnu: Add python-hclust2. 
* gnu/packages/bioinformatics.scm (python-hclust2): New variable.
 2023-01-25 00:22:53 +01:00
Mădălin Ionel Patrașcu
47839a9ed6
gnu: Add python-cmseq. 
* gnu/packages/bioinformatics.scm (python-cmseq): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
 2023-01-25 00:22:53 +01:00
Ricardo Wurmus
9558da5bb4
gnu: Add python-bcbio-gff/biopython-1.73. 
* gnu/packages/bioinformatics.scm (python-bcbio-gff/biopython-1.73): New variable.
 2023-01-25 00:22:53 +01:00
Ricardo Wurmus
45f2d7eb90
gnu: Add emacs-malyon. 
* gnu/packages/emacs-xyz.scm (emacs-malyon): New variable.
 2023-01-25 00:22:53 +01:00
Sughosha
dfcd913578
gnu: Add synthpod. 
* gnu/packages/music.scm (synthpod): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-01-25 00:22:53 +01:00
Maxim Cournoyer
f9c151b936
gnu: rpm: Update to 4.18.0. 
* gnu/packages/package-management.scm (rpm): Update to 4.18.0.
[arguments]: Improve robustness of fix-lua-check phase.  Delete obsolete
set-nss-library-path phase.
[inputs]: Remove bdb, cpio, nspr, and nss.  Move python to...
[native-inputs]: ... here.
 2023-01-24 16:48:33 -05:00
Bruno Victal
f912d5c740
doc: Substitute @deffn usage with @defvar for Scheme variables. 
* doc/guix.texi (Base Services) (Networking Setup)
(Networking Services) (Printing Services) (Desktop Services)
(Sound Services) (Database Services) (Mail Services) (Messaging Services)
(File-Sharing Services) (Web Services) (DNS Services)
(Power Management Services) (Virtualization Services) (Linux Services)
(Miscellaneous Services): Substitute @deffn usage with @defvar for Scheme variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-23 23:51:33 +01:00
Bruno Victal
f88e855f9f
doc: Use @defvar instead of @defvr for Scheme variables. 
* doc/guix.texi (Build Systems) (Search Paths) (The Store)
(The Store Monad) (File Systems) (Mapped Devices) (User Accounts)
(Locales) (Base Services) (Scheduled Job Execution) (Log Rotation)
(Networking Setup) (Networking Services) (Unattended Upgrades)
(X Window) (Desktop Services) (Database Services) (Messaging Services)
(Kerberos Services) (Web Services) (Certificate Services) (VPN Services)
(Network File System) (Samba Services) (Power Management Services)
(Audio Services) (Virtualization Services) (Linux Services) (Hurd Services)
(Miscellaneous Services) (Setuid Programs) (Name Service Switch)
(Initial RAM Disk) (Service Reference) (Shepherd Services)
(Essential Home Services) (Mcron Home Service)
(Power Management Home Services) (Shepherd Home Service) (Secure Shell)
(Desktop Home Services) (Guix Home Services) (Supported Platforms)
(Instantiate an Image) (image-type Reference): Use @defvar instead of @defvr for Scheme variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-23 23:51:02 +01:00
Bruno Victal
d2454e91b3
doc: Fix incorrect use of @defvar. 
* doc/guix.texi (Monitoring Services) (VNC Services)
(Samba Services) (Game Services) (PAM Mount Service)
(Guix Services): Fix incorrect use of @defvar.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-01-23 23:49:45 +01:00
Ludovic Courtès
5aef6a55a2
doc: Document the 'release-monitoring-url' package property. 
* doc/guix.texi (Invoking guix refresh): Mention the
'release-monitoring-url' property.
 2023-01-23 23:23:08 +01:00
Ludovic Courtès
3b744e9975
gnu: flint: Add 'release-monitoring-url' property. 
* gnu/packages/algebra.scm (flint)[properties]: New field.
 2023-01-23 23:23:08 +01:00
Ludovic Courtès
e6c01420db
channels: 'channel->code' emits 'channel' field only when necessary. 
* guix/channels.scm (channel->code): Emit 'commit' field only when it is
true.
 2023-01-23 23:23:07 +01:00
Ludovic Courtès
a8792bc796
import: opam: Do not crash when description is missing. 
Previous 'guix import opam coccinelle' would crash due to the lack of a
description.

* guix/import/opam.scm (opam->guix-package): Call 'beautify-description'
only when "description" metadata is available.
 2023-01-23 23:23:07 +01:00
Maxim Cournoyer
9e4f1f8c33
gnu: universal-ctags: Update to 6.0.20230122.0. 
* gnu/packages/code.scm (universal-ctags): Update to 6.0.20230122.0.
 2023-01-23 12:10:09 -05:00
Clément Lassieur
4da229d777
gnu: woof: Update to 20220202. 
* gnu/packages/web.scm (woof): Update to 20220202.
[source]: Change to Github.
[arguments]: Update source path, change to python3, remove chmod.
[inputs]: Change to python3.
 2023-01-23 16:53:14 +01:00
Pierre Neidhardt
3a1b18aa45
gnu: Add dwarfs. 
* gnu/packages/file-systems.scm (dwarfs): New variable.
 2023-01-23 14:19:11 +01:00
Pierre Neidhardt
04ade01beb
gnu: Add libdwarf. 
* gnu/packages/elf.scm (libdwarf): New variable.
 2023-01-23 14:19:11 +01:00
Jan (janneke) Nieuwenhuizen
be07379630
gnu: dezyne: Update to 2.17.0. 
* gnu/packages/dezyne.scm (dezyne): Update to 2.17.0.
 2023-01-23 13:10:59 +01:00
Maxim Cournoyer
2b1e5cb6a8
gnu: diffoscope: Simplify the build-man-page phase. 
* gnu/packages/diffoscope.scm (diffoscope) [phases]: Remove MAKE-FLAGS binding
in the build-man-page phase, as the python-build-system has no such argument.
 2023-01-22 19:50:48 -05:00
Maxim Cournoyer
e5dc6541fe
gnu: diffoscope: Fix indentation. 
* gnu/packages/diffoscope.scm (diffoscope): Fix indentation.
 2023-01-22 19:46:49 -05:00
Vagrant Cascadian
eea8a872ff
gnu: diffoscope: Update to 233. 
* gnu/packages/diffoscope.scm (diffoscope): Update to 233.
[native-inputs]: Add lzip and python-pypdf, drop python-pypdf2.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 19:40:32 -05:00
Vagrant Cascadian
f8400b2cbd
gnu: Add python-pypdf. 
* gnu/packages/pdf.scm (python-pypdf): New variable.
* gnu/packages/patches/python-pypdf-annotate-tests-appropriately.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register patch.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 19:40:10 -05:00
Sergiu Ivanov
356e33641a
gnu: volctl: Update to 0.9.3. 
Fixes <https://issues.guix.gnu.org/58120>.

* gnu/packages/gtk.scm (volctl): Update to 0.9.3.
[arguments]: Update substitutions in patch-path phase and delete
trailing #t.
[inputs]: Delete pulseaudio.  Move gtk+ to...
[propagated-inputs] ... here.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 16:24:10 -05:00
Sergiu Ivanov
7a932ccf85
gnu: Add python-pulsectl. 
* gnu/packages/audio.scm (python-pulsectl): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 16:24:04 -05:00
Sergiu Ivanov
9aa674151a
gnu: volctl: Make the synopsis line shorter. 
* gnu/packages/gtk.scm (volctl): Make the synopsis line shorter.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 16:14:41 -05:00
Simon Tournier
5965d74c8c
gnu: libarchive: Mention bsdcat, bsdcpio and bsdtar in description. 
* gnu/packages/backup.scm (libarchive)[description]: Mention the bsdcat,
bsdcpio and bsdtar commands.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2023-01-22 14:16:11 -05:00
Ludovic Courtès
6ffeef92e6
services: hpcguix-web: Provide default values. 
* gnu/services/web.scm (<hpcguix-web-configuration>)[specs]: Default to #f.
(hpcguix-web-shepherd-service): Do not pass '--config' when SPECS is #f.
(hpcguix-web-service-type)[default-value]: New field.
* doc/guix.texi (Web Services): Adjust accordingly.
 2023-01-22 18:12:09 +01:00
Ludovic Courtès
e1dbac04c3
gnu: hpcguix-web: Update to 0.3.0. 
* gnu/packages/web.scm (hpcguix-web): Update to 0.3.0.
[inputs]: Add GUILE-SYNTAX-HIGHLIGHT.
[arguments]: In 'wrap-program' phase, take guile-syntax-highlight into
account.
* gnu/tests/web.scm (%hpcguix-web-specs): Remove 'define'.
* doc/guix.texi (Web Services): Adjust accordingly.
 2023-01-22 18:12:09 +01:00
Andreas Enge
15eda456a7
gnu: pari-gp: Update to 2.15.2. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.15.2.
 2023-01-22 18:03:07 +01:00
Tobias Geerinckx-Rice
091c4d7f0e
gnu: libxmlb: Update to 0.3.10. 
* gnu/packages/xml.scm (libxmlb): Update to 0.3.10.
 2023-01-15 01:00:21 +01:00
Tobias Geerinckx-Rice
d2d38add07
gnu: libucl: Update to 0.8.2. 
* gnu/packages/wm.scm (libucl): Update to 0.8.2.
 2023-01-15 01:00:21 +01:00
Tobias Geerinckx-Rice
f887a0085d
gnu: memcached: Update to 1.6.18. 
* gnu/packages/databases.scm (memcached): Update to 1.6.18.
 2023-01-15 01:00:21 +01:00
Tobias Geerinckx-Rice
6fb3dfdfa9
gnu: klavaro: Update to 3.14. 
* gnu/packages/education.scm (klavaro): Update to 3.14.
 2023-01-15 01:00:21 +01:00
Tobias Geerinckx-Rice
494a2e0707
gnu: gvfs: Update to 1.50.3. 
* gnu/packages/gnome.scm (gvfs): Update to 1.50.3.
 2023-01-15 01:00:21 +01:00
Tobias Geerinckx-Rice
4ce0304c70
gnu: barrage: Update to 1.0.6. 
* gnu/packages/games.scm (barrage): Update to 1.0.6.
 2023-01-15 01:00:21 +01:00
Liliana Marie Prikler
3174affaf4
gnu: gnome-latex: Update to 3.44.0. 
* gnu/packages/gnome.scm (gnome-latex): Update to 3.44.0.
 2023-01-22 12:54:37 +01:00
Liliana Marie Prikler
7fef5c1e2a
gnu: devhelp: Update to 43.0. 
* gnu/packages/gnome.scm (devhelp): Update to 43.0.
[arguments]: Update ‘skip-gtk-update-icon-cache’ accordingly.
 2023-01-22 12:54:37 +01:00
Liliana Marie Prikler
14d8c4fe6f
gnu: gedit: Update to 44.1. 
* gnu/packages/gnome.scm (gedit): Update to 44.1.
[native-inputs]: Add gtk-doc.
[inputs]: Add amtk and tepl.
 2023-01-22 12:54:37 +01:00
Liliana Marie Prikler
19e1bab4a0
gnu: amtk: Update to 5.6.1. 
* gnu/packages/gnome.scm (amtk): Update to 5.6.1.
 2023-01-22 12:54:37 +01:00
Liliana Marie Prikler
d88dcdadbd
gnu: tepl: Update to 6.4.0. 
* gnu/packages/gnome.scm (tepl): Update to 6.4.0.
 2023-01-22 12:54:36 +01:00