Commit graph

38546 commits

Author SHA1 Message Date
Ricardo Wurmus
9b7df80b9b
gnu: r-rcppeigen: Update to 0.3.3.5.0.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.5.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus
bcc17f7f11
gnu: r-rrcov: Update to 1.4-7.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-7.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus
70ee5ab137
gnu: r-cowplot: Update to 0.9.4.
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.4.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus
7213ef07c6
gnu: r-rann: Update to 2.6.1.
* gnu/packages/statistics.scm (r-rann): Update to 2.6.1.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus
2c8594d963
gnu: r-sfsmisc: Update to 1.1-3.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-3.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus
54ebdf6f74
gnu: r-rmarkdown: Update to 1.11.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.11.
[propagated-inputs]: Remove r-rprojroot.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus
fb45934202
gnu: r-rstudioapi: Update to 0.9.0.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.9.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus
8f49d99a84
gnu: r-git2r: Update to 0.24.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.24.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus
c12e429348
gnu: r-httr: Update to 1.4.0.
* gnu/packages/statistics.scm (r-httr): Update to 1.4.0.
2019-01-12 23:35:13 +01:00
Ricardo Wurmus
02c89c5812
gnu: r-commonmark: Update to 1.7.
* gnu/packages/statistics.scm (r-commonmark): Update to 1.7.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
fe8c44502b
gnu: r-checkmate: Update to 1.9.0.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.0.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
ca4861c602
gnu: r-backports: Update to 1.1.3.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.3.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
23347dc353
gnu: r-dbplyr: Update to 1.3.0.
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.3.0.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
f12ed3664d
gnu: r-tibble: Update to 2.0.0.
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.0.
[propagated-inputs]: Add r-fansi and r-pkgconfig.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
c668a95861
gnu: r-rlang: Update to 0.3.1.
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.1.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
495866a9d7
gnu: r-knitr: Update to 1.21.
* gnu/packages/statistics.scm (r-knitr): Update to 1.21.
[propagated-inputs]: Add r-xfun.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
bf3aded0cf
gnu: r-markdown: Update to 0.9.
* gnu/packages/statistics.scm (r-markdown): Update to 0.9.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
eae93bd3f2
gnu: r-bh: Update to 1.69.0-1.
* gnu/packages/statistics.scm (r-bh): Update to 1.69.0-1.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
b6e27673e6
gnu: r-pheatmap: Update to 1.0.12.
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.12.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
ca2bc7e037
gnu: r-mgcv: Update to 1.8-26.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-26.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
60f1bce09f
gnu: r-codetools: Update to 0.2-16.
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-16.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
3dbd87f504
gnu: r-class: Update to 7.3-15.
* gnu/packages/statistics.scm (r-class): Update to 7.3-15.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
35cf4874cc
gnu: r-survival: Update to 2.43-3.
* gnu/packages/statistics.scm (r-survival): Update to 2.43-3.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
11a36548d9
gnu: r-argparse: Update to 2.0.0.
* gnu/packages/cran.scm (r-argparse): Update to 2.0.0.
[propagated-inputs]: Add r-r6; remove r-proto.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
527c605598
gnu: r-callr: Update to 3.1.1.
* gnu/packages/cran.scm (r-callr): Update to 3.1.1.
[propagated-inputs]: Remove r-base64enc.
2019-01-12 23:35:12 +01:00
Ricardo Wurmus
b140569e18
gnu: r-readxl: Update to 1.2.0.
* gnu/packages/cran.scm (r-readxl): Update to 1.2.0.
[propagated-inputs]: Add r-progress.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
0aad198e2b
gnu: r-pracma: Update to 2.2.2.
* gnu/packages/maths.scm (r-pracma): Update to 2.2.2.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
44c69a536e
gnu: r-rcpparmadillo: Update to 0.9.200.5.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.5.0.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
0e87bf0177
gnu: r-processx: Update to 3.2.1.
* gnu/packages/cran.scm (r-processx): Update to 3.2.1.
[propagated-inputs]: Remove r-assertthat, r-crayon, and r-testthat.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
2766d3436a
gnu: r-sjlabelled: Update to 1.0.16.
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.16.
[propagated-inputs]: Remove r-tibble and r-tidyselect.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
813d9c51e3
gnu: r-broom: Update to 0.5.1.
* gnu/packages/cran.scm (r-broom): Update to 0.5.1.
[propagated-inputs]: Add r-generics.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
25c67ecfc6
gnu: Add r-generics.
* gnu/packages/cran.scm (r-generics): New variable.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
646e1ef059
gnu: r-curl: Update to 3.3.
* gnu/packages/cran.scm (r-curl): Update to 3.3.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
ef91530362
gnu: r-readr: Update to 1.3.1.
* gnu/packages/statistics.scm (r-readr): Update to 1.3.1.
[propagated-inputs]: Add r-clipr and r-crayon.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
48102ce123
gnu: r-mvabund: Update to 4.0.1.
* gnu/packages/cran.scm (r-mvabund): Update to 4.0.1.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
04a18a81ae
gnu: r-writexl: Update to 1.1.
* gnu/packages/cran.scm (r-writexl): Update to 1.1.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
a2315c6702
gnu: r-jsonlite: Update to 1.6.
* gnu/packages/cran.scm (r-jsonlite): Update to 1.6.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
91e05559bd
import: cran: Suggest input changes.
* guix/import/cran.scm (latest-cran-release, latest-bioconductor-release):
Return input-changes.
2019-01-12 23:35:11 +01:00
Ricardo Wurmus
7e634c2f53
refresh: Suggest input changes when updating.
* guix/upstream.scm (<upstream-source>)[input-changes]: New field.
(<upstream-input-change>): New record.
(upstream-input-change?, upstream-input-change-name,
upstream-input-change-type, upstream-input-change-action, changed-inputs): New
procedures.
(package-update): Pass along input changes.
* guix/script/refresh.scm (update-package): Process input changes.
2019-01-12 23:35:11 +01:00
Kei Kebreau
ea600ff709
gnu: python-pillow: Update homepage.
* gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
2019-01-12 16:39:26 -05:00
Kei Kebreau
acbf312573
gnu: python-pillow: Update to 5.4.0
* gnu/packages/python.scm (python-pillow): Update to 5.4.0.
[arguments]: Add 'patch-ldconfig' phase.
2019-01-12 16:38:36 -05:00
Ricardo Wurmus
146c6b62bf
gnu: Sort package modules in (gnu packages guile).
* gnu/packages/guile.scm: Sort list of gnu/packages modules.
2019-01-12 12:14:31 +01:00
Ricardo Wurmus
7d8baff97b
gnu: impressive: Update to 0.12.0.
* gnu/packages/pdf.scm (impressive): Update to 0.12.0.
2019-01-12 12:14:31 +01:00
Ricardo Wurmus
24155bf40d
gnu: Move Java compression packages to new module.
* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable.
(java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz):
Move these variables from here...
* gnu/packages/java-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module
references.
2019-01-12 12:14:28 +01:00
guy fleury iteriteka
1704367719
gnu: Add Bochs.
* gnu/packages/virtualization.scm (bochs): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-11 17:09:20 -05:00
Leo Famulari
81c64748ba
gnu: Stellarium: Update to 0.18.3.
* gnu/packages/astronomy.scm (stellarium): Update to 0.18.3.
[arguments]: Skip a broken test.
2019-01-11 17:07:55 -05:00
Pierre Neidhardt
1ac0c1b899
gnu: opendht: Make argon2 a propagated input so that its .pc is found.
* gnu/packages/networking.scm (opendht)[inputs]: Remove argon2.
[propagated-inputs]: Add it here.
2019-01-11 19:48:00 +01:00
Pierre Neidhardt
e0fa641380
gnu: opendht: Use jsoncpp and restbed.
* gnu/packages/crypto.scm (opendht): Move definition to networking.scm.
* gnu/packages/networking.scm (opendht)[inputs]: Add jsoncpp and restbed.
2019-01-11 19:48:00 +01:00
Pierre Neidhardt
362fba83dd
gnu: Add restbed.
* gnu/packages/networking.scm (restbed): New variable.
2019-01-11 19:48:00 +01:00
Pierre Neidhardt
50e1843b3a
gnu: libupnp: Update to 1.6.25.
* gnu/packages/upnp.scm (libupnp): Update to 1.6.25.
2019-01-11 19:48:00 +01:00