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Author SHA1 Message Date
Sharlatan Hellseher
b5de40f04b
gnu: cfitsio: Update to 4.4.1. 
* gnu/packages/astronomy.scm (cfitsio): Update to 4.4.1.

Change-Id: Ia589fb141192b59ee5e422a8106da89dff931e85
 2024-07-30 10:30:45 +01:00
Sharlatan Hellseher
b5c33f99e3
gnu: Add python-pytest-8. 
* gnu/packages/check.scm (python-pytest-8): New variable.

Change-Id: Ie584a48a2749cc7b196e373fe4e6e08f47165620
 2024-07-30 10:30:45 +01:00
Sharlatan Hellseher
99b292a653
gnu: Add python-pluggy-next. 
* gnu/packages/python-build.scm (python-pluggy-next): New variable.

Change-Id: If3ec3f930a799df9602db71112a6c6a5272b524c
 2024-07-30 10:30:38 +01:00
Zheng Junjie
4e92ed625f
gnu: bwa,bwa-pssm: Improve package style. 
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Use G-expression.
(bwa-pssm)[arguments]: Use G-expression.

Change-Id: I63dd0f13f337fbf84967f1ef1b6332ce3391ae97
 2024-07-30 15:57:44 +08:00
Zheng Junjie
18a69ddbf3
gnu: bwa: Fix cross-compiling. 
* gnu/packages/bioinformatics.scm (bwa)[arguments]<#:make-flags>: Use
CC-FOR-TARGET.

Change-Id: I63dd0f13f337fbf84967f1ef1b6332ce3391ae97
 2024-07-30 15:53:58 +08:00
Spencer King
471c4322df
gnu: bwa: Update to 0.7.18. 
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.18.
[source]: Switch to git-fetch.
[supported-systems]: Add aarch64-linux.

Change-Id: I63dd0f13f337fbf84967f1ef1b6332ce3391ae97
 2024-07-30 15:44:36 +08:00
Tomas Volf
6efd02551d
gnu: skopeo: Update to 1.16.0. 
* gnu/packages/virtualization.scm (skopeo): Update to 1.16.0.
[arguments]<#:phases>: Delete the `cc-to-gcc' phase.

Change-Id: I35a91219c3c920f37f496df6322ae1e40fa1ccc3
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:50:14 +08:00
Ashish SHUKLA
3e4e1aa99b
gnu: ddcci-driver-linux: Update to 0.4.5. 
* gnu/packages/linux.scm (ddcci-driver-linux): Update to 0.4.5.
[source]: Remove already upstream patch.

* gnu/packages/patches/ddcci-driver-linux-6.8.patch: Remove it.
* gnu/local.mk: Unregister it.

Change-Id: I1d4920ec84ea2a67554560181e99e9e2d535af2a
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:40:40 +08:00
Ashish SHUKLA
be46349a4e
gnu: yambar-wayland: Enable pulseaudio module. 
* gnu/packages/wm.scm (yambar-wayland)[inputs]: Add pulseaudio.

Change-Id: I1d4933ef10557ed06b9f00f21b466a4ea19be910
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:40:40 +08:00
Ashish SHUKLA via Guix-patches via
f2d5e04c3a
gnu: weechat-wee-slack: Update to 2.10.2. 
* gnu/packages/messaging.scm (weechat-wee-slack): Update to 2.10.2.

Change-Id: I2a5f0d4989fb9841016fcf8c3ab4411d837220c6
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:40:40 +08:00
Wilko Meyer
a22098c943
gnu: Add drm-info. 
* gnu/packages/freedesktop.scm (drm-info): New variable.

Change-Id: I02a0bdcbb49644de9884038cd36bf6d8482f84ae
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:40:40 +08:00
Tomas Volf
c80e8aed74
gnu: buildah: Update to 1.37.0. 
* gnu/packages/containers.scm (buildah): Update to 1.37.0.

Change-Id: I2717b8ebbd63c40938c90b2821c199d2025b849c
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-07-30 14:40:40 +08:00
Zheng Junjie
1db794104f
gnu: ftxui: Update to 5.0.0. 
* gnu/packages/cpp.scm (ftxui): Update to 5.0.0.

Change-Id: I5a1d0170c9d44426fb76eb00296af644fa7d8c16
 2024-07-30 14:40:36 +08:00
Wilko Meyer
4f68605d56
gnu: linux-libre 6.1: Update to 6.1.101. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.101.
(linux-libre-6.1-pristine-source): Update hash.

Change-Id: Ia489adca9b27b469e777726c20ccb373c6d6aab4
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-07-29 23:20:06 -04:00
Wilko Meyer
9a3c1b8118
gnu: linux-libre 6.6: Update to 6.6.42. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.42.
(linux-libre-6.6-pristine-source): Update hash.

Change-Id: I898fab9f04f71f6cdc759315f7fd4e5d28e8d710
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-07-29 23:20:05 -04:00
Wilko Meyer
1e407ed2ba
gnu: linux-libre 6.9: Update to 6.9.11. 
* gnu/packages/linux.scm (linux-libre-6.9-version): Update to 6.9.11.
(linux-libre-6.9-pristine-source): Update hash.

Change-Id: I1a400cd4abecca2e1c6344353ede1e7b5be75d7b
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-07-29 23:20:05 -04:00
Wilko Meyer
93e19067b4
gnu: Add linux-libre 6.10.1. 
* gnu/packages/linux.scm (linux-libre-6.10-version, linux-libre-6.10-gnu-revision,
deblob-scripts-6.10, linux-libre-6.10-pristine-source, linux-libre-6.10-source,
linux-libre-headers-6.10, linux-libre-6.10): New variables.
* gnu/packages/aux-files/linux-libre/6.10-arm.conf,
gnu/packages/aux-files/linux-libre/6.10-arm64.conf,
gnu/packages/aux-files/linux-libre/6.10-i686.conf,
gnu/packages/aux-files/linux-libre/6.10-x86.conf: New files.
* Makefile.am (AUX_FILES): Add them.

Change-Id: If62ec2e8029ebd7531d3b4ba9a666c0b5f3b0f4c
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-07-29 23:20:04 -04:00
Leo Famulari
859d1245b4
gnu: dwarves: Update to 1.27. 
* gnu/packages/linux.scm (dwarves): Update to 1.27.

Change-Id: Id986fdd240a6619544ff6be93cce00afd9fc31bd
 2024-07-29 23:20:04 -04:00
Vinicius Monego
f093ea3f2e
gnu: Add python-motulator. 
* gnu/packages/engineering.scm (python-motulator): New variable.

Change-Id: I96af42be634a4ceaffe011d81177d42d48616eb2
Signed-off-by: jgart <jgart@dismail.de>
 2024-07-29 13:48:50 -05:00
Vinicius Monego
fdc6274de5
gnu: python-celery: Update to 5.4.0. 
* gnu/packages/python-xyz.scm (python-celery): Update to 5.4.0.
[native-inputs]: Add python-google-cloud-storage.

Change-Id: I9ddb215661491deaab0d8dc31207cd3043637d21
 2024-07-28 11:00:53 -03:00
Vinicius Monego
a268e94bf2
gnu: python-arviz: Update to 0.19.0. 
* gnu/packages/statistics.scm (python-arviz): Update to 0.19.0.

Change-Id: Ia42eb00424e77e47e315842313d0ea3759102eab
 2024-07-28 11:00:53 -03:00
Vinicius Monego
731241c367
gnu: xonsh: Update to 0.18.2. 
* gnu/packages/shells.scm (xonsh): Update to 0.18.2.
[source](snippet): Adjust substitution filenames and delete the vendored ply
package.
[arguments]<#:test-flags>: Skip new failing test.

Change-Id: I9a975c9ab200075cbbfe6daf1892c33cb5c3a624
 2024-07-28 11:00:37 -03:00
Vinicius Monego
ed882ad668
gnu: python-pyro-ppl: Simplify inputs. 
* gnu/packages/machine-learning.scm (python-pyro-ppl)[native-inputs]: Remove
ninja, jupyter, python-black, python-flake8, python-graphviz, python-isort,
python-lap, python-matplotlib, python-mypy, python-nbformat, python-nbsphinx,
python-nbstripout, python-nbval, python-pandas, python-pillow,
python-pypandoc, python-pytest, python-pytest-cov, python-pytest-xdist,
python-scikit-learn, python-scipy, python-seaborn, python-sphinx,
python-sphinx-rtd-theme, python-torchvision, python-visdom, python-wget,
python-yapf.

Change-Id: Id7a413fdbdd8a808dffb4804c8a7f04bf2c31bbc
 2024-07-28 10:59:48 -03:00
Vinicius Monego
22e8880ae2
gnu: python-pyro-ppl: Update to 1.9.1. 
* gnu/packages/machine-learning.scm (python-pyro-ppl): Update to 1.9.1.
[arguments]: Remove #:test-flags and skip all tests in #:tests?.

Change-Id: If90024d904bb830df2868423a5947ecaf45b46fc
 2024-07-28 10:59:04 -03:00
Vinicius Monego
2b40c6985a
gnu: python-botorch: Update to 0.11.3. 
* gnu/packages/machine-learning.scm (python-botorch): Update to 0.11.3.
[arguments]<#:test-flags>: Skip a failing test.
<#:phases>: Delete the 'lo-version phase.

Change-Id: I110631da8c5e442eaf00daa1b42caff29d61b36b
 2024-07-28 10:49:17 -03:00
Vinicius Monego
92993da382
gnu: ngspice: Enable tests. 
* gnu/packages/engineering.scm (ngspice)[arguments]: Pass #t to #:tests?.
[native-inputs]: Add perl.

Change-Id: I209999b5685865e9c7a17106da8ffab9fad1367b
 2024-07-28 10:49:17 -03:00
Vinicius Monego
0c3fd900cf
gnu: libngspice, ngspice: Improve package style. 
* gnu/packages/engineering.scm (libngspice, ngspice): Reformat packages using
'guix style'.
[arguments]: Use G-Expressions.

Change-Id: I59efa6a78797c2dc2a960ce0be74b2a7381d6d4c
 2024-07-28 10:49:17 -03:00
Vinicius Monego
bd03b42d91
gnu: libngspice, ngspice: Update to 43. 
* gnu/packages/engineering.scm (libngspice, ngspice): Update to 43.
(libngspice)[arguments]<#:phases>: Delete the 'patch-timestamps and
'delete-program-manuals phases.
(ngspice)[arguments]<#:phases>: Delete the 'delete-include-files phase.
Remove the line that deletes the now deleted 'delete-program-manuals phase.

These substitutions do not apply anymore.

Change-Id: Ie7ec8dd0998df38828e2e0af226158922e34ea09
 2024-07-28 10:49:17 -03:00
Vinicius Monego
b556eee0f1
gnu: Add emacs-org-remark. 
* gnu/packages/emacs-xyz.scm (emacs-org-remark): New variable.

Change-Id: If7c5cca824f9b9a0c3f7fb0d39d0f73f0fe52460
 2024-07-28 10:49:15 -03:00
Sören Tempel
46a64c7fdd
gnu: klee-uclibc: Only build on x86_64 Linux. 
* gnu/packages/check.scm (klee-uclibc): Add supported-systems.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-07-27 17:53:02 +02:00
Sören Tempel
ed726598fc
gnu: klee: Only build on x86_64 Linux. 
* gnu/packages/check.scm (klee): Add supported-systems.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-07-27 17:53:02 +02:00
Sören Tempel
842517477b
gnu: klee: Only strip bin directory. 
This avoid several warnings to be emitted by strip(1) when attempting
to strip .bca (i.e. LLVM bitcode) files shipped in /lib/klee/runtime/.

* gnu/packages/check.scm (klee): Set #:strip-directories.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-07-27 17:53:02 +02:00
Sören Tempel
187b6df6f1
gnu: klee: Enable the test suite. 
* gnu/packages/check.scm (klee): Enable all tests.
[arguments]: Patch lit configuration and set #:test-target.
<#:configure-flags?>: Enable system and unit tests, configure gtest.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-07-27 17:53:02 +02:00
Sören Tempel
661d5eeb8e
gnu: klee: Wrap klee-stats for Python dependencies. 
* gnu/packages/check.scm (klee): Wrap klee-stats.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2024-07-27 17:53:01 +02:00
Liliana Marie Prikler
0acc1c68d6
gnu: lager: Update to 0.1.1. 
* gnu/packages/cpp.scm (lager): Update to 0.1.1.

Change-Id: Ied19cc6d5371cee9d97aa4dfb21a78f6d1582f10
 2024-07-27 11:25:23 +02:00
Liliana Marie Prikler
e165382c16
gnu: zug: Update to 0.1.1. 
* gnu/packages/cpp.scm (zug): Update to 0.1.1.

Change-Id: I0e86256f986bab5d97081ddd9ef85375643a6997
 2024-07-27 11:25:23 +02:00
Liliana Marie Prikler
009fb462ef
gnu: Add python-clingox. 
* gnu/packages/potassco.scm (python-clingox): New variable.
 2024-07-27 11:25:23 +02:00
Liliana Marie Prikler
d3e2b68e38
gnu: Add python-asprin. 
* gnu/packages/potassco.scm (python-asprin): New variable.
 2024-07-27 11:25:23 +02:00
jgart
c6ff1d6ff7
gnu: trealla: Update to 2.55.10. 
* gnu/packages/prolog.scm (trealla): Update to 2.55.10.

Change-Id: I2545a6d3ac5bf740c4ceb9e8bcd33d60707e67b9
 2024-07-26 18:28:07 -05:00
jgart
a4a66187e6
gnu: trealla: Update to 2.55.9. 
* gnu/packages/prolog.scm (trealla): Update to 2.55.9.

Change-Id: I29b5500da8e6acc382397662d4c44cf1c6e1fdf9
 2024-07-26 18:28:06 -05:00
jgart
4f201dfa3f
gnu: trealla: Update to 2.55.8. 
* gnu/packages/prolog.scm (trealla): Update to 2.55.8.

Change-Id: Ia938a79d35948d56a97a8933b312916f264c31b7
 2024-07-26 18:28:06 -05:00
Leo Famulari
862a9b5b25
gnu: wfetch: Give the executable the expected name. 
Fixes a problem reported by bdju on #guix:

https://logs.guix.gnu.org/guix/2024-07-26.log#221323

* gnu/packages/python-xyz.scm (wfetch)[arguments]: Rename the executable in the
custom 'install' phase.

Change-Id: I0e8dd41195ef716618b9dd5fd196f392a546272a
 2024-07-26 16:34:22 -04:00
Timotej Lazar
72e586fcae
gnu: gtk: Fix build on aarch64. 
* gnu/packages/gtk.scm (gtk)[arguments]<#:test-options>: Rename failing
test suite to match upstream change on aarch64-linux.

Change-Id: Ibdf03a94e71f72283a093cba6d5a328004defa5c
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2024-07-26 19:21:34 +02:00
Ludovic Courtès
9db34c41ac
build-system/meson: #:test-options can be a gexp. 
* guix/build-system/meson.scm (meson-build, meson-cross-build): Accept
gexps for #:test-options.

Change-Id: I9cfec616f067a5c9928f65892e370f90f23f4352
 2024-07-26 19:21:33 +02:00
Rodion Goritskov
4bc49e2185
services: agate: Update options for compatibility with the current Agate version. 
* gnu/services/web.scm (<agate-configuration>)[certs]: Add.
[cert]: Remove.
[key]: Remove.
[hostname]: Change from string to list.
[silent?]: Remove.
[only-tls13?]: Add.
[central-conf?]: Add.
[ed25519?]: Add.
[skip-port-check?]: Add.
(agate-shepherd-service): Change handling of addr and hostname, add new
options handling.
* doc/guix.texi (Web Services): Update.

Change-Id: Ifb4968d704627344913bb69f20636d710a4fe738
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-07-26 18:55:07 +02:00
vicvbcun
2cbdec8bcd
file-systems: Allow specifying CIFS credentials in a file. 
As files in the store and /etc/fstab are world readable, specifying the
password in the file-system record is suboptimal.  To mitigate this,
`mount.cifs' supports reading `username', `password' and `domain' options from
a file named by the `credentials' or `cred' option.

* gnu/build/file-systems.scm (mount-file-system): Read mount options from the
file specified via the `credentials' or `cred' option if specified.

Change-Id: I786c5da373fc26d45fe7a876c56a8c4854d18532
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-07-26 18:50:53 +02:00
Richard Sent
b631640f3b
home: Set 700 permissions on .gnupg with home-gpg-agent-service 
* gnu/home/services/gnupg.scm (gpg-agent-activation): New variable.
(home-gpg-agent-service-type) [extensions]: Extend
home-activation-service-type.

Change-Id: If3365c6cade2b03ee53a466ce1d63a5cdf654d6c
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2024-07-26 18:22:04 +02:00
Lars Bilke
31fe177a97
gnu: petsc: Build reproducibly. 
* gnu/packages/maths.scm (petsc)[arguments]: In ‘configure’ phase, add
‘sorted’ call in ‘gmakegen.py’.
In ‘clean-local-references’, remove substitution of “Libraries compiled
on”, which is unnecessary since  PETSc 3.9
(<a970bd7489>).
Add substitution for “Machine characteristics” bit.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: Ibb846c1ae368af94b46d5ce789b1263e0bc78a13
 2024-07-26 18:18:12 +02:00
Ludovic Courtès
4c8997c123
gnu: rr: Add ‘supported-systems’ field. 
* gnu/packages/debug.scm (rr)[supported-systems]: New field.

Change-Id: I6d93b1eae91fbe6c963e737afd6e5d2a30160ac1
 2024-07-26 17:44:39 +02:00
Andrew Tropin
c1907b39e8
gnu: emacs-kbd: Update to 0.0.1-1.b9048e9. 
* gnu/packages/emacs-xyz.scm (emacs-kbd): Update to 0.0.1-1.b9048e9.

Change-Id: Ib73c4440c7db42ef60f851cf19359a6c01db1f50
 2024-07-26 18:14:11 +04:00