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Author SHA1 Message Date
Ricardo Wurmus
d4ff09af0d
gnu: Add r-urltools. 
* gnu/packages/cran.scm (r-urltools): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
09dde7fb01
gnu: Add r-polyclip. 
* gnu/packages/cran.scm (r-polyclip): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
91e06bedf8
gnu: Add r-tweenr. 
* gnu/packages/cran.scm (r-tweenr): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
85431ca3a8
gnu: Add r-triebeard. 
* gnu/packages/cran.scm (r-triebeard): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
e25828839d
gnu: Add r-ggplotify. 
* gnu/packages/cran.scm (r-ggplotify): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
1c59ec707e
gnu: Add r-farver. 
* gnu/packages/cran.scm (r-farver): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
585d5ae0fb
gnu: Add r-gridgraphics. 
* gnu/packages/cran.scm (r-gridgraphics): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
f8a5af4653
gnu: Add r-do-db. 
* gnu/packages/bioconductor.scm (r-do-db): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
af26c7ae70
gnu: Add r-fgsea. 
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
0d50d0df08
gnu: Add r-msigdbr. 
* gnu/packages/cran.scm (r-msigdbr): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
2d70460892
gnu: Add r-xkcd. 
* gnu/packages/cran.scm (r-xkcd): New variable.
 2019-03-27 16:17:19 +01:00
Ricardo Wurmus
2331bf2a64
gnu: Add r-extrafont. 
* gnu/packages/cran.scm (r-extrafont): New variable.
 2019-03-27 16:17:18 +01:00
Ricardo Wurmus
b6933ea634
gnu: Add r-extrafontdb. 
* gnu/packages/cran.scm (r-extrafontdb): New variable.
 2019-03-27 16:17:18 +01:00
Ricardo Wurmus
81df4e1e98
gnu: Add r-rttf2pt1. 
* gnu/packages/cran.scm (r-rttf2pt1): New variable.
 2019-03-27 16:17:18 +01:00
Ludovic Courtès
06013a45aa
gnu: emacs-debbugs: Update to 0.17. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.17.
 2019-03-27 14:59:42 +01:00
Ludovic Courtès
42314ffa07
refresh: Update the source code URL. 
Reported by Tobias Geerinckx-Rice <me@tobias.gr>
in <https://bugs.gnu.org/35010>.

* guix/upstream.scm (update-package-source): Take 'source' instead of
'version' as the second argument.
[update-expression]: Change to take 'replacements', a list of
replacement pairs.
Compute OLD-URL and NEW-URL and replace the dirname of the OLD-URL with
that of NEW-URL.
* guix/scripts/refresh.scm (update-package): Adjust call to
'update-package-source' accordingly.
 2019-03-27 14:59:42 +01:00
Ludovic Courtès
1ee3d2dcb8
upstream: 'package-update' returns the <upstream-source> object. 
Fixes a regression introduced in
abd4d6b33d, where CHANGES would no longer
be a thunk.

Reported by Ricardo Wurmus.

* guix/upstream.scm (package-update/url-fetch): Return SOURCE as the
third value instead of CHANGES.
* guix/scripts/refresh.scm (update-package): Adjust accordingly.
 2019-03-27 14:59:41 +01:00
Ricardo Wurmus
18c51cf3d3
gnu: Add r-xyz. 
* gnu/packages/cran.scm (r-xyz): New variable.
 2019-03-27 14:43:26 +01:00
Ludovic Courtès
9e5f2060ad
scripts: Skip 'guix pull' suggestion when running code from a checkout. 
* guix/scripts.scm (warn-about-old-distro): Do not warn when
GUIX_UNINSTALLED is set.
 2019-03-27 11:54:06 +01:00
Ludovic Courtès
45c0d1d790
vm: Ask QEMU for more RAM in the VM that makes ISO9660 images. 
* gnu/system/vm.scm (iso9660-image): Pass #:memory-size to
'expression->derivation-in-linux-vm'.
 2019-03-27 11:54:06 +01:00
Ludovic Courtès
391e0d65d7
services: Deprecate 'xfce-desktop-service'. 
* gnu/services/desktop.scm (xfce-desktop-service-type)[default-value]
[description]: New fields.
(xfce-desktop-service): Deprecate.
* gnu/system/examples/desktop.tmpl: Use the (service …) form.
* gnu/installer/services.scm (%desktop-environments): Add TODO comment.
* doc/guix.texi (Desktop Services): Adjust accordingly, and fix spelling
of "Xfce" throughout.
 2019-03-27 11:54:06 +01:00
Ludovic Courtès
ee05cc7fe3
services: Deprecate 'gnome-desktop-service'. 
* gnu/services/desktop.scm (gnome-desktop-service-type)[default-value]:
New field.
(gnome-desktop-service): Deprecate.
* gnu/installer/services.scm (%desktop-environments): Use the (service …)
form for GNOME.
* gnu/system/examples/desktop.tmpl: Likewise.
* doc/guix.texi (Desktop Services): Adjust accordingly.
 2019-03-27 11:54:06 +01:00
Ludovic Courtès
1c155ec76b
installer: Use the (service …) form for MATE. 
* gnu/installer/services.scm (%desktop-environments): Use
'mate-desktop-service-type' for MATE.
 2019-03-27 11:54:05 +01:00
Ludovic Courtès
c73e554c3f
installer: Ask for confirmation before formatting partitions. 
* gnu/installer/newt/page.scm (run-confirmation-page): New procedure.
* gnu/installer/newt/partition.scm (draw-formatting-page): Call it.
 2019-03-27 11:54:05 +01:00
Ludovic Courtès
50247be5f4
installer: Produce an 'initrd-modules' field if needed. 
* gnu/installer/parted.scm (root-user-partition?): New procedure.
(bootloader-configuration): Use it.
(user-partition-missing-modules, initrd-configuration): New procedures.
(user-partitions->configuration): Call 'initrd-configuration'.o
* gnu/installer.scm (not-config?): Rename to...
(module-to-import?): ... this.  Add cases to exclude non-installer and
non-build (gnu …) modules.
(installer-program)[installer-builder]: Add GUIX to the extension list.
 2019-03-27 11:54:05 +01:00
Ludovic Courtès
54043bf23f
installer: Emit 'bootloader' field before 'swap-devices'. 
* gnu/installer/parted.scm (user-partitions->configuration): Move
'bootloader' section above 'swap-devices'.
 2019-03-27 11:54:05 +01:00
Pierre Neidhardt
37099f5844
gnu: Add emacs-webfeeder. 
* gnu/packages/emacs-xyz.scm (emacs-webfeeder): New variable.
 2019-03-27 11:33:09 +01:00
Ricardo Wurmus
58d8225ddb
gnu: trim-galore: Add pigz. 
* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz.
[arguments]: Embed reference to pigz.
 2019-03-27 11:32:08 +01:00
Ricardo Wurmus
5f1e31094d
gnu: trim-galore: Fix test for Python. 
* gnu/packages/bioinformatics.scm (trim-galore)[arguments]: Replace
"configure" phase to skip ill-advised test for Python.
 2019-03-27 11:28:38 +01:00
Ricardo Wurmus
2a509880d4
gnu: hdf-java: Adjust indentation. 
* gnu/packages/maths.scm (hdf-java): Adjust indentation.
 2019-03-27 10:47:34 +01:00
Ricardo Wurmus
64dc8b0bfd
gnu: hdf-java: Fix build. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake;
substitute embedded hdf5 version number.
 2019-03-27 10:13:46 +01:00
Ricardo Wurmus
9286c0f7e8
gnu: hdf-java: Use INVOKE. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from
build phases.
 2019-03-27 10:12:57 +01:00
Ricardo Wurmus
dfe420ee46
gnu: r-rhdf5lib: Update to 1.4.3. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.3.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
3b6c77445b
gnu: r-genomicfeatures: Update to 1.34.7. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.7.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
a12c527d3c
gnu: r-hdf5r: Update to 1.1.1. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.1.1.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
a7332d1a2f
gnu: r-caret: Update to 6.0-82. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-82.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
733b3c59da
gnu: r-gtable: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.0.
 2019-03-27 09:33:50 +01:00
Ricardo Wurmus
fc64504f2d
gnu: grantlee: Delete broken tests. 
* gnu/packages/qt.scm (grantlee)[arguments]: Add phase "delete-broken-tests".
 2019-03-27 09:33:50 +01:00
Kei Kebreau
4fee5ec049
gnu: Add adanaxis-mush and adanaxisgpl. 
* gnu/packages/games.scm (adanaxis-mush, adanaxisgpl): New variables.
 2019-03-26 20:59:15 -04:00
Pierre Langlois
4dcf221c85
gnu: qjackctl: Re-enable xunique. 
Version 0.5.6 of qjackctl appears to have fixed the xunique
bug that was causing X hanging when using tiling window managers.

See d54a1da43f/ChangeLog (L9)

* gnu/packages/audio.scm (qjackctl)[arguments]: Remove "--disable-xunique"
from configure-flags.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-27 00:09:38 +01:00
Ricardo Wurmus
dd2f0cdba1
gnu: python-django-overextends: Use INVOKE. 
* gnu/packages/django.scm (python-django-overextends)[arguments]: Use INVOKE.
 2019-03-27 00:04:07 +01:00
Ricardo Wurmus
de6be02379
gnu: python-django-contact-form: Use INVOKE. 
* gnu/packages/django.scm (python-django-contact-form)[arguments]: Use INVOKE.
 2019-03-27 00:03:31 +01:00
Ricardo Wurmus
7cdc7e579b
gnu: fritzing: Update to 0.9.3b. 
* gnu/packages/engineering.scm (fritzing): Update to 0.9.3b.
[source]: Fetch from git.
[arguments]: Use INVOKE and adjust configure phase.
[inputs]: Add libgit2; fetch fritzing-parts-db via git.
 2019-03-26 23:58:33 +01:00
Ricardo Wurmus
68631e037b
gnu: ldc: Use INVOKE. 
* gnu/packages/dlang.scm (ldc)[arguments]: Use INVOKE.
 2019-03-26 23:13:54 +01:00
Ricardo Wurmus
4b81d5c4bc
gnu: ldc-bootstrap: Use INVOKE. 
* gnu/packages/dlang.scm (ldc-bootstrap)[arguments]: Use INVOKE and
unconditionally return #T from build phase.
 2019-03-26 23:13:54 +01:00
Ricardo Wurmus
27cd31e6a5
gnu: open-adventure: Use INVOKE. 
* gnu/packages/games.scm (open-adventure)[arguments]: Use INVOKE.
 2019-03-26 23:13:54 +01:00
Ricardo Wurmus
7b67bb1fab
gnu: 0ad: Use INVOKE. 
* gnu/packages/games.scm (0ad)[arguments]: Use INVOKE.
 2019-03-26 23:13:51 +01:00
Pierre Neidhardt
c771b799bd
gnu: Add jami-client-gnome. 
* gnu/packages/telephony.scm (jami-client-gnome): New variable.
 2019-03-26 19:17:01 +01:00
Pierre Neidhardt
b630967247
gnu: Add libringclient. 
* gnu/packages/telephony.scm (libringclient): New variable.
 2019-03-26 19:17:01 +01:00
Pierre Neidhardt
1bfcb19bc3
gnu: Add libring. 
* gnu/packages/telephony.scm (libring): New variable.
 2019-03-26 19:17:01 +01:00