Commit graph

105596 commits

Author SHA1 Message Date
Maxim Cournoyer
d524ec6fb5
doc: Add a security keys section to the cookbook.
* doc/guix-cookbook.texi (Top): Register new menu.
(System Configuration): Likewise.
(Using security keys): New section.
2022-11-24 20:51:30 -05:00
Nicolas Goaziou
5eb2995c00
gnu: emacs-popon: Update to 0.12.
* gnu/packages/emacs-xyz.scm (emacs-popon): Update to 0.12.
2022-11-24 23:47:32 +01:00
Nicolas Goaziou
94907932b8
gnu: emacs-flymake-mypy: Update to 0.3.0.
* gnu/packages/emacs-xyz.scm (emacs-flymake-mypy): Update to 0.3.0.
2022-11-24 23:45:05 +01:00
Nicolas Goaziou
d858714ffc
gnu: burgerspace: Update to 1.9.5.
* gnu/packages/games.scm (burgerspace): Update to 1.9.5.
2022-11-24 23:36:03 +01:00
Nicolas Goaziou
fa5701964d
gnu: emacs-inspector: Activate tests.
* gnu/packages/emacs-xyz.scm (emacs-inspector)[arguments]: Add tests.  Skip
failing test.  Fix compatibility with Emacs 28 and older.
2022-11-24 23:30:57 +01:00
Nicolas Goaziou
84136e95b2
gnu: emacs-inspector: Fix base version.
* gnu/packages/emacs-xyz.scm (emacs-inspector)[version]: Use "0.8" as base
version, which is the version from "inspector.el" instead of
"tree-inspector.el".
2022-11-24 23:30:56 +01:00
Maxim Cournoyer
82c43b276d
gnu: linux-libre: Enable building info doc.
* gnu/packages/patches/linux-libre-infodocs-target.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (linux-libre-6.0-source, linux-libre-5.15-source)
(linux-libre-5.10-source): Apply above patch.
(doc-supported?): New procedure.
(make-linux-libre) [DOC-SUPPORTED?]: Add new patch in
the default patches used.  Add a BUILD-DOC? argument.
(make-linux-libre*): Add a BUILD-DOC? argument.  Validate BUILD-DOC? for
supported VERSION.
[arguments]: Conditionally add the build-doc and install-doc phases.
[native-inputs]: Conditionally add fontconfig, graphviz, python-wrapper,
python-sphinx, texinfo and which.
2022-11-24 16:35:11 -05:00
Ricardo Wurmus
5f8c11d48e
gnu: emacs-s: Do not use full-fledged Emacs to run tests.
* gnu/packages/emacs-xyz.scm (emacs-s)[arguments]: Use emacs-minimal.
2022-11-24 22:32:53 +01:00
Efraim Flashner
b3beeaa309
gnu: arm-trusted-firmware: Remove blobs in a snippet.
* gnu/packages/firmware.scm (make-arm-trusted-firmware)[source]: Add
snippet to remove binary blobs.
[arguments]: Remove related phase.
2022-11-24 22:22:39 +02:00
Efraim Flashner
255450bed2
gnu: arm-trusted-firmware: Update to 2.8.
* gnu/packages/firmware.scm (make-arm-trusted-firmware): Update to 2.8.
[arguments]: Remove trailing #t from phases. Clean up regexes.
2022-11-24 22:22:38 +02:00
Efraim Flashner
564dcaa1fa
gnu: python-brotlicffi: Unbundle brotli.
* gnu/packages/python-compression.scm (python-brotlicffi)[source]: Add
snippet to delete bundled libbrotli.
[arguments]: Add phase to configure using shared libbrotli.
[inputs]: Add brotli.
2022-11-24 22:22:32 +02:00
Maxim Cournoyer
4c9e94a453
gnu: Add qt-creator.
* gnu/packages/qt.scm (qt-creator): New variable.

wip
2022-11-24 14:55:57 -05:00
Maxim Cournoyer
085831010c
gnu: qttools: Add clang-15 as input.
* gnu/packages/qt.scm (qttools) [inputs]: Add clang-15, so that the qdoc
command can be built.
[phases] {sanity-check}: New phase, to guard against a problem that proved
difficult to isolate.
2022-11-24 14:55:57 -05:00
Maxim Cournoyer
d1dc2c47fe
gnu: Add clazy.
* gnu/packages/qt.scm (clazy): New variable.
2022-11-24 14:55:57 -05:00
Maxim Cournoyer
9381e14536
gnu: Add qttranslations.
* gnu/packages/qt.scm (qttranslations): New variable.
2022-11-24 14:52:56 -05:00
Nicolas Goaziou
8f3e10ae81
gnu: emacs-projectile: Activate tests.
* gnu/packages/emacs-xyz.scm (emacs-projectile)[source]: Use Git repository
instead of released tarball to get the test file.
[arguments]: Activate tests, and fix a failing one.
2022-11-24 18:06:33 +01:00
Nicolas Goaziou
b438e1f231
gnu: emacs-projectile: Improve description.
* gnu/packages/emacs-xyz.scm (emacs-projectile)[description]: Use proper
capitalization, expand some words, add Texinfo markup, remove fancy typography.
2022-11-24 18:05:41 +01:00
Nicolas Goaziou
826d862eb3
gnu: emacs-projectile: Update to 2.7.0.
* gnu/packages/emacs-xyz.scm (emacs-projectile): Update to 2.7.0.
2022-11-24 18:05:41 +01:00
Nicolas Goaziou
071d0cac80
gnu: emacs-kind-icon: Update to 0.1.8.
* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.1.8.
2022-11-24 18:05:40 +01:00
Nicolas Goaziou
95aa64e9fe
gnu: emacs-vertico: Update to 0.29.
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.29.
2022-11-24 18:05:40 +01:00
Nicolas Goaziou
49cfa7d8bd
gnu: emacs-eldev: Update to 1.3.
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 1.3.
2022-11-24 18:05:40 +01:00
Nicolas Goaziou
b8eb99f817
gnu: emacs-detached: Update to 0.10.0.
* gnu/packages/emacs-xyz.scm (emacs-detached): Update to 0.10.0.
2022-11-24 18:05:39 +01:00
Nicolas Goaziou
3174c4c17d
gnu: emacs-org-modern: Update to 0.6.
* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.6.
2022-11-24 18:05:39 +01:00
Ricardo Wurmus
c29d999a34
gnu: r-ancombc: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.1.
[propagated-inputs]: Remove r-microbiome, r-nlme, and r-phyloseq; add r-cvxr, r-emmeans,
r-lme4, r-lmertest, r-mia, r-rngtools, r-s4vectors,
r-singlecellexperiment, r-summarizedexperiment, and
r-treesummarizedexperiment.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
139da51753
gnu: Add r-mia.
* gnu/packages/bioconductor.scm (r-mia): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
90d8ac279f
gnu: Add r-treesummarizedexperiment.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
efb965a4fa
gnu: Add r-cvxr.
* gnu/packages/cran.scm (r-cvxr): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
bde758150f
gnu: Add r-ecosolver.
* gnu/packages/cran.scm (r-ecosolver): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
697a0f8ca4
gnu: Add r-scs.
* gnu/packages/cran.scm (r-scs): New variable.
2022-11-24 18:02:15 +01:00
Ricardo Wurmus
8b1bee45f7
gnu: Add r-osqp.
* gnu/packages/cran.scm (r-osqp): New variable.
2022-11-24 18:02:15 +01:00
Mădălin Ionel Patrașcu
8d3bd8e4b0
gnu: Add r-ancombc.
* gnu/packages/bioconductor.scm (r-ancombc): New variable.
2022-11-24 18:02:15 +01:00
Leo Famulari
a8c36bf8c4
gnu: linux-libre 4.19: Update to 4.19.266.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.266.
(linux-libre-4.19-pristine-source): Update hash.
2022-11-24 11:25:51 -05:00
Ricardo Wurmus
fa59a22140
gnu: r-aims: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-aims): Update to 1.30.0.
2022-11-24 15:36:18 +01:00
Mădălin Ionel Patrașcu
2e85d26ebb
gnu: Add r-aims.
* gnu/packages/bioconductor.scm (r-aims): New variable.
2022-11-24 15:35:38 +01:00
Ricardo Wurmus
6f39e16124
gnu: r-alevinqc: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.14.0.
2022-11-24 15:28:15 +01:00
Mădălin Ionel Patrașcu
5dc82a7f8b
gnu: Add r-alevinqc.
* gnu/packages/bioconductor.scm (r-alevinqc): New variable.
2022-11-24 15:22:28 +01:00
Ricardo Wurmus
610616d448
gnu: r-alphabeta: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.12.0.
2022-11-24 15:13:50 +01:00
Mădălin Ionel Patrașcu
6c7f0849c1
gnu: Add r-alphabeta.
* gnu/packages/bioconductor.scm (r-alphabeta): New variable.
2022-11-24 15:09:13 +01:00
Ricardo Wurmus
c706a0a2af
gnu: r-asafe: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.24.0.
2022-11-24 15:02:41 +01:00
Mădălin Ionel Patrașcu
01124e5a10
gnu: Add r-asafe.
* gnu/packages/bioconductor.scm (r-asafe): New variable.
2022-11-24 15:02:10 +01:00
Ricardo Wurmus
c2cba91ac9
gnu: r-arrayexpress: Update to 1.57.0.
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.57.0.
2022-11-24 14:54:41 +01:00
Mădălin Ionel Patrașcu
13e8930efb
gnu: Add r-arrayexpress.
* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
2022-11-24 14:53:09 +01:00
Ricardo Wurmus
f43a41d196
gnu: r-scuttle: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.1.
2022-11-24 12:32:11 +01:00
Ricardo Wurmus
a2ad5b53bf
gnu: r-rgreat: Update to 2.0.2.
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.0.2.
2022-11-24 12:32:11 +01:00
Ricardo Wurmus
8bfac375aa
gnu: r-bioccheck: Update to 1.34.2.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.2.
2022-11-24 12:32:11 +01:00
Ricardo Wurmus
f9747ecc2c
gnu: r-dose: Update to 3.24.2.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.24.2.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
a5ee462b7a
gnu: r-shortread: Update to 1.56.1.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.56.1.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
3bc54ddeab
gnu: r-chipseeker: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.34.1.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
d3696e71a9
gnu: r-deconvr: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.2.
2022-11-24 12:32:10 +01:00
Ricardo Wurmus
04340b27ba
gnu: r-bambu: Update to 3.0.2.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.2.
2022-11-24 12:32:10 +01:00