Commit graph

31737 commits

Author SHA1 Message Date
Ricardo Wurmus
d73c5728f3
gnu: r-rhdf5: Update to 2.24.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0.
[arguments]: Remove.
[propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib.
[inputs]: Remove perl.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
c76e8baf9e
gnu: r-tximport: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.8.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus
b6c2c8f781
gnu: r-mutationalpatterns: Update to 1.6.1.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.6.1.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
72f11ff9c5
gnu: r-bamsignals: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
1a08bb8a17
gnu: r-rhtslib: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.12.1.
[native-inputs]: Remove autoconf.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
2c480bb012
gnu: r-zlibbioc: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.26.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
7e6537e257
gnu: r-motifrg: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.24.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
8217c2d0bc
gnu: r-seqlogo: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.46.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
17d35de73f
gnu: r-genomation: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
5229cedf57
gnu: r-seqpattern: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
25d1df5764
gnu: r-impute: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.54.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
89ef133ebd
gnu: r-bsgenome: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.48.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
f2eb2e453e
gnu: r-topgo: Update to 2.32.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.32.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
2f66fecd89
gnu: r-graph: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.58.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
b4ad4ec6b4
gnu: r-genomicfeatures: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.0.
[propagated-inputs]: Remove r-rmysql.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
a30df29768
gnu: r-rtracklayer: Update to 1.40.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.2.
[native-inputs]: Add pkg-config.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
90102bd06b
gnu: r-genomicalignments: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.16.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus
9bf4110ea1
gnu: r-summarizedexperiment: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.10.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
82f593f378
gnu: r-delayedarray: Update to 0.6.0.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
d2367a89dd
gnu: r-rsamtools: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
942655add1
gnu: r-biostrings: Update to 2.48.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.48.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
e6eac58d4c
gnu: r-biocparallel: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
1763cba80e
gnu: r-biomart: Update to 2.36.1.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.36.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
77f66feee7
gnu: r-annotationdbi: Update to 1.42.1.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.42.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
6fd71f1b6a
gnu: r-biobase: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.40.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
e51afc63b7
gnu: r-genomicranges: Update to 1.32.3.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.3.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
c2401d06c5
gnu: r-xvector: Update to 0.20.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.20.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
0a465e5694
gnu: r-limma: Update to 3.36.1.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
d358a5a0c1
gnu: r-variantannotation: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
4639025284
gnu: r-edger: Update to 3.22.2.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.2.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
953c8b18f8
gnu: r-genomeinfodb: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.16.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
8b44c28f5d
gnu: r-iranges: Update to 2.14.10.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.10.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
33cd15fa84
gnu: r-s4vectors: Update to 0.18.2.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.2.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus
607acf3194
gnu: r-dnacopy: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.54.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
3679a2fec4
gnu: r-bioccheck: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.16.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
dc6c168ac1
gnu: r-biocstyle: Update to 2.8.2.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.8.2.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
e5f52b692a
gnu: r-biocviews: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
97af51ef40
gnu: r-biocinstaller: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.30.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
e5907a44e1
gnu: r-biocgenerics: Update to 0.26.0.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.26.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
9370b8ee9f
gnu: r-grohmm: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
712fe39680
gnu: r-systempiper: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
eabe78faca
gnu: r-shortread: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.38.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
9da8e275ca
gnu: r-gostats: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
d8410d6610
gnu: r-category: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
f1094f50a7
gnu: r-gseabase: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.42.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
9177ac2295
gnu: r-rbgl: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.56.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
5516db9e70
gnu: r-annotationforge: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
16da69b5e6
gnu: r-dexseq: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.26.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
51c1f96ebc
gnu: r-deseq2: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.20.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus
41657b15f4
gnu: r-genefilter: Update to 1.62.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.62.0.
2018-06-02 13:39:06 +02:00