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605 commits

Author SHA1 Message Date
Ricardo Wurmus
307667c4ef
gnu: r-abaenrichment: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.16.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
3a731c8334
gnu: r-annotationfuncs: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.36.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
eda4908556
gnu: r-annotationtools: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.60.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
50e6f76278
gnu: r-allelicimbalance: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.24.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus
3a35d27450
gnu: r-aucell: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.8.0.
[propagated-inputs]: Add r-biocgenerics and r-s4vectors.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
ca7192a1c9
gnu: r-ebimage: Update to 4.28.1. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.28.1.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
3796e2442b
gnu: r-yamss: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
cf0a1cb3b4
gnu: r-gtrellis: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.18.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
4f8e0487fc
gnu: r-somaticsignatures: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.22.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
580e434267
gnu: r-yapsa: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.12.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
2f90bab8d1
gnu: r-gcrma: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.58.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
a87aa2ff5a
gnu: r-simpleaffy: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.62.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
87942b74c6
gnu: r-yaqcaffy: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.46.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
eb697ff5bb
gnu: r-quantro: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.20.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus
94fdea1267
gnu: r-yarn: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.12.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
f0dd0fec40
gnu: r-roar: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.22.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
1f0101ae01
gnu: r-xbseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.18.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
a07ee2584a
gnu: r-massspecwavelet: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.52.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
4fb52345b2
gnu: r-xcms: Update to 3.8.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.1.
[propagated-inputs]: Add r-iranges.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
92f40538d3
gnu: r-wrench: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.4.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
25db5611e2
gnu: r-wiggleplotr: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.10.1.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
1a2569e4cc
gnu: r-widgettools: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.64.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
316bcd07a8
gnu: r-webbioc: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.58.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
18b93e0350
gnu: r-zfpkm: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
c5a4c5a1ce
gnu: r-rbowtie2: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
82d87ce02a
gnu: r-progeny: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus
4f0d858841
gnu: r-arrmnormalization: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
97e317007c
gnu: r-biocfilecache: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.10.2.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
049de95de7
gnu: r-iclusterplus: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.22.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
02684becc9
gnu: r-rbowtie: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
2cebc5d135
gnu: r-sgseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
3dd2450e65
gnu: r-rhisat2: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0.
[arguments]: Add phase to make package reproducible and to avoid shelling out
to 'which'.
[native-inputs]: Remove which.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
a15e52ec78
gnu: r-quasr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
11db82b07c
gnu: r-rqc: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
a9e5145c32
gnu: r-birewire: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.18.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
8d766270c4
gnu: r-birta: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-birta): Update to 1.30.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus
643aaf7eaf
gnu: r-ropls: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
7d29dc9c7b
gnu: r-biosigner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
700072565f
gnu: r-annotatr: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.12.1.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
4390788ea2
gnu: r-rsubread: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
482ba0b3ed
gnu: r-flowutils: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
8ad6b23f68
gnu: r-consensusclusterplus: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
b2a2f32130
gnu: r-flowcore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 1.52.1.
[propagated-inputs]: Remove r-corpcor, r-graph, r-mass, and r-rrcov; add
r-cytolib.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
8042087804
gnu: r-flowmeans: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.46.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
ba71567acd
gnu: r-flowsom: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.18.0.
[propagated-inputs]: Add r-cytoml, r-flowworkspace, and r-rcolorbrewer; remove
r-flowutils.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
4930a89ad5
gnu: r-mixomics: Update to 6.10.6. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.6.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
51ffac455e
gnu: r-rcistarget: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.6.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
42b06298ef
gnu: r-cicero: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
33ce50e322
gnu: r-genie3: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.8.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus
3672b74f6f
gnu: r-roc: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.62.0.
[propagated-inputs]: Add r-knitr.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
9eade2294e
gnu: r-watermelon: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.30.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
f5ef7dd6b7
gnu: r-gdsfmt: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
8b941a50ef
gnu: r-bigmelon: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.12.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
2223bbc726
gnu: r-seqbias: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.34.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
02c18abe62
gnu: r-reqon: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.32.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
c0cba4b542
gnu: r-wavcluster: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.20.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
cb734c60dc
gnu: r-timeseriesexperiment: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.4.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
6f5415d5f6
gnu: r-variantfiltering: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
053a2127bc
gnu: r-genomegraphs: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-genomegraphs): Update to 1.46.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
e13f977312
gnu: r-wavetiling: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-wavetiling): Update to 1.28.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
e2f481dad0
gnu: r-variancepartition: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus
0b0906c845
gnu: r-htqpcr: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.40.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
989be6df99
gnu: r-unifiedwmwqpcr: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.22.0.
 2019-12-15 15:39:04 +01:00
Ricardo Wurmus
418d72142c
gnu: r-illuminaio: Update to 0.28.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.28.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
db85744ef3
gnu: r-geoquery: Update to 2.54.1. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.54.1.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
048a43d6a5
gnu: r-scone: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.10.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
2f223b2115
gnu: r-scdd: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.10.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
81a125cdb6
gnu: r-noiseq: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.30.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
9732e690a5
gnu: r-monocle: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.14.0.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
dc5237f85e
gnu: r-mast: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.12.0.
[propagated-inputs]: Remove r-blme.
 2019-12-15 15:38:56 +01:00
Ricardo Wurmus
a5cc1f104b
gnu: r-icobra: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
0383bd05ce
gnu: r-ihw: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
153dc51bfe
gnu: r-lpsymphony: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.14.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
a9649c4138
gnu: r-ebseq: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.26.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
96030bf718
gnu: r-deds: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-deds): Update to 1.60.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
bba70cda0a
gnu: r-dnacopy: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.60.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
eb3fd3825c
gnu: r-copynumber: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.26.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
84825e5523
gnu: r-chipexoqual: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.10.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
2e17cbd733
gnu: r-savr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.24.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
c88448d4b8
gnu: r-biocsingular: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
12e2aa96dc
gnu: r-biocneighbors: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.1.
[propagated-inputs]: Remove r-biocgenerics; add r-matrix.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
efd0934733
gnu: r-ruvseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.20.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
2d86dc2062
gnu: r-dnabarcodes: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.16.0.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
74bb4cdf57
gnu: r-inspect: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.0.
[propagated-inputs]: Remove r-preprocesscore; add r-genomeinfodb and r-kernsmooth.
 2019-12-15 15:38:55 +01:00
Ricardo Wurmus
565bb84b31
gnu: r-plgem: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.58.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
9c071144a8
gnu: r-rots: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
728571fbc6
gnu: r-glimma: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
ab7f3cbbeb
gnu: r-goseq: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.38.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b2b5b03115
gnu: r-ctc: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.60.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b701ed6e83
gnu: r-genomicinteractions: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
bb841742dd
gnu: r-interactionset: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.14.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
595b6c9a89
gnu: r-riboseqr: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
88af7049ea
gnu: r-riboprofiling: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.16.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b0897fbf95
gnu: r-chipcomp: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.16.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
d77228232d
gnu: r-bayseq: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.20.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
23ce5ad1d6
gnu: r-qdnaseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.22.0.
[propagated-inputs]: Remove r-biocparallel; add r-future and r-future-apply.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
8f2a4ea18b
gnu: r-cghcall: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.48.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
8341f7062e
gnu: r-cghbase: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.46.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
b6c2f098ba
gnu: r-marray: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.64.0.
 2019-12-15 15:38:54 +01:00
Ricardo Wurmus
cf8968d7e6
gnu: r-chippeakanno: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.0.
 2019-12-15 15:38:53 +01:00