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Author SHA1 Message Date
Tobias Geerinckx-Rice
4ac7112748
gnu: man-db: Update to 2.8.5. 
* gnu/packages/man.scm (man-db): Update to 2.8.5.
[arguments]: Add systemd unit directory to #:configure-flags.
 2019-05-11 19:55:38 +02:00
Timothy Sample
dcb3a0fe0a
services: gdm: Include user profile in D-Bus paths. 
This partially addresses <https://bugs.gnu.org/35267>.

* gnu/services/xorg.scm (dbus-daemon-wrapper): When available, include
directories from '~/.guix-profile' in the search paths of the D-Bus
daemon.
 2019-05-11 13:41:34 -04:00
Julien Lepiller
c087a90e06
gnu: wine-staging: Update to 4.8. 
* gnu/packages/wine.scm (wine-staging,wine-staging-patchset-data):
Update to 4.8.
 2019-05-11 17:06:14 +02:00
Arun Isaac
6dedf0aeb2
gnu: emacs-use-package: Update to 2.4. 
* gnu/packages/emacs-xyz.scm (emacs-use-package): Update to 2.4.
 2019-05-11 17:06:53 +05:30
Oleg Pykhalov
59e72ac8f5
gnu: Add emacs-rotate-text. 
* gnu/packages/emacs-xyz.scm (emacs-rotate-text): New variable.
 2019-05-11 14:06:13 +03:00
Ricardo Wurmus
21ec924868
gnu: r-hdf5array: Update to 1.12.1. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.1.
 2019-05-11 12:05:35 +02:00
Ricardo Wurmus
2521bb1d7d
gnu: r-sfsmisc: Update to 1.1-4. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-4.
 2019-05-11 12:05:34 +02:00
Ricardo Wurmus
bc4e1114f3
gnu: r-dt: Update to 0.6. 
* gnu/packages/statistics.scm (r-dt): Update to 0.6.
 2019-05-11 12:05:34 +02:00
Ricardo Wurmus
9d38b15b2e
gnu: r-rversions: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-rversions): Update to 2.0.0.
 2019-05-11 12:05:34 +02:00
Ricardo Wurmus
ae9ed1390f
gnu: r-quadprog: Update to 1.5-7. 
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-7.
 2019-05-11 12:05:34 +02:00
Ricardo Wurmus
4238c3ee2a
gnu: r-styler: Update to 1.1.1. 
* gnu/packages/cran.scm (r-styler): Update to 1.1.1.
 2019-05-11 12:05:34 +02:00
Ricardo Wurmus
080c706225
gnu: r-bookdown: Update to 0.10. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.10.
 2019-05-11 12:05:34 +02:00
Ricardo Wurmus
53dbf3a2ac
gnu: r-future: Update to 1.13.0. 
* gnu/packages/cran.scm (r-future): Update to 1.13.0.
 2019-05-11 12:05:34 +02:00
Ricardo Wurmus
407a04fa03
gnu: r-grimport2: Update to 0.1-5. 
* gnu/packages/cran.scm (r-grimport2): Update to 0.1-5.
 2019-05-11 12:05:33 +02:00
Ricardo Wurmus
a75c6d9c63
gnu: r-rcmdcheck: Update to 1.3.3. 
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.3.
 2019-05-11 12:05:33 +02:00
Ricardo Wurmus
c02f574d38
gnu: r-fs: Update to 1.3.1. 
* gnu/packages/cran.scm (r-fs): Update to 1.3.1.
 2019-05-11 12:05:33 +02:00
Ricardo Wurmus
86ad5dbc62
gnu: r-parsedate: Update to 1.2.0. 
* gnu/packages/cran.scm (r-parsedate): Update to 1.2.0.
[propagated-inputs]: Add r-rematch2.
 2019-05-11 12:05:33 +02:00
Ricardo Wurmus
4d970db846
gnu: r-processx: Update to 3.3.1. 
* gnu/packages/cran.scm (r-processx): Update to 3.3.1.
 2019-05-11 12:05:33 +02:00
Ricardo Wurmus
00399a780b
gnu: r-ggrepel: Update to 0.8.1. 
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.1.
 2019-05-11 12:05:33 +02:00
Ricardo Wurmus
7a67bca198
gnu: r-dimred: Update to 0.2.3. 
* gnu/packages/cran.scm (r-dimred): Update to 0.2.3.
 2019-05-11 12:05:33 +02:00
Ricardo Wurmus
d1d6e13eb6
gnu: r-regioner: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.1.
 2019-05-11 12:05:32 +02:00
Jonathan Brielmaier
41e09a159a
gnu: osc: Update to 0.165.0. 
* gnu/packages/build-tools.scm (osc): Update to 0.165.0.
[source]: Use git-fetch.
[arguments]: Use python3. osc_hotshot.py is gone. So, do not attempt to delete
it. Rename fix-filename-and-remove-unused phase to fix-filename phase.
[inputs]: Add rpm. Remove python2-urlgrabber. Replace python2-m2crypto and
python2-pycurl with python-m2crypto and python-pycurl.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2019-05-11 14:08:52 +05:30
Jonathan Brielmaier
c0023514a3
gnu: rpm: Update to 4.14.2.1. 
* gnu/packages/package-management.scm (rpm): Update to 4.14.2.1.
[inputs]: Use python instead of python-2.
[home-page]: Use HTTPS URI.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2019-05-11 14:08:51 +05:30
Diego Nicola Barbato
7f03133ba3
doc: Fix typo. 
* doc/guix.texi (shepherd-service): Replace 'requirements' with 'requirement'.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2019-05-11 13:11:35 +05:30
HiPhish
c3ebaec531
gnu: neovim: Update to 0.3.5. 
* gnu/packages/vim.scm (neovim): Update to 0.3.5.
[source]: Use git-fetch.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2019-05-11 12:56:13 +05:30
Ricardo Wurmus
825c39bfbb
etc: Refer to ci.guix.gnu.org in install script. 
* etc/guix-install.sh: Replace reference to ci.guix.info with ci.guix.gnu.org.
 2019-05-10 23:38:10 +02:00
Ludovic Courtès
dc5729a8e0
services: 'gc-root-service-type' now has a default value. 
* gnu/services.scm (gc-root-service-type)[default-value]: New field.
 2019-05-10 23:29:18 +02:00
Ludovic Courtès
76ae10a1f4
linux-container: Improve filtering of unnecessary file systems. 
* gnu/system/linux-container.scm (containerized-operating-system)[user-file-systems]:
Add trailing slash for the "/dev/" and "/sys/" prefixes.
 2019-05-10 23:29:18 +02:00
Ludovic Courtès
f8885ecab6
system: Export 'operating-system-default-essential-services'. 
* gnu/system.scm (essential-services): Rename to...
(operating-system-default-essential-services): ... this.
(<operating-system>)[essential-services]: Adjust accordingly.
 2019-05-10 23:29:18 +02:00
Leo Famulari
755a6027ce
gnu: Go 1.11: Update to 1.11.10. 
* gnu/packages/golang.scm (go-1.11): Update to 1.11.10.
 2019-05-10 13:30:07 -04:00
Nicolas Goaziou
7a9158f83e
gnu: emacs-auctex: Update to 12.1.2. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 12.1.2.
 2019-05-10 19:23:37 +02:00
Nicolas Goaziou
de1206dc5f
gnu: emacs-debbugs: Update to 0.18. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.18.
 2019-05-10 19:20:18 +02:00
Ricardo Wurmus
d13f3a033e
gnu: gnome-tweak-tool: Update to 3.28.1. 
Fixes <https://bugs.gnu.org/35597>.

* gnu/packages/gnome.scm (gnome-tweak-tool): Deprecate and rename...
(gnome-tweaks): ...to this.  Update to 3.28.1.
[build-system]: Use meson-build-system.
[arguments]: Adjust configure flags; pass glib-or-gtk? flag; remove custom
phases that are now provided by the meson-build-system; add phases "wrap" and
"wrap-gi-typelib".
[native-inputs]: Remove meson-for-build and ninja.
[home-page]: Update.
[description]: Use "Tweaks" instead of "Tweak Tool".
* gnu/packages/patches/gnome-tweak-tool-search-paths.patch: Rename file...
* gnu/packages/patches/gnome-tweaks-search-paths.patch: ...to this.
* gnu/local.mk (dist_patch_DATA): Update patch file name.
 2019-05-10 13:31:32 +02:00
Ricardo Wurmus
496b024fde
gnu: Add r-rqc. 
* gnu/packages/bioconductor.scm (r-rqc): New variable.
 2019-05-10 13:31:03 +02:00
Ricardo Wurmus
5e0241db84
gnu: Add r-quasr. 
* gnu/packages/bioconductor.scm (r-quasr): New variable.
 2019-05-10 13:31:03 +02:00
Ricardo Wurmus
5865606459
gnu: Add r-rhisat2. 
* gnu/packages/bioconductor.scm (r-rhisat2): New variable.
 2019-05-10 13:31:03 +02:00
Ricardo Wurmus
1444153913
gnu: Add r-sgseq. 
* gnu/packages/bioconductor.scm (r-sgseq): New variable.
 2019-05-10 13:31:03 +02:00
Ricardo Wurmus
30f1029f4c
gnu: Add r-xgboost. 
* gnu/packages/cran.scm (r-xgboost): New variable.
 2019-05-10 13:31:03 +02:00
Ricardo Wurmus
29591ca611
gnu: Add r-citr. 
* gnu/packages/cran.scm (r-citr): New variable.
 2019-05-10 13:31:02 +02:00
Ricardo Wurmus
afc4370d4c
gnu: Add r-refmanager. 
* gnu/packages/cran.scm (r-refmanager): New variable.
 2019-05-10 13:31:02 +02:00
Ricardo Wurmus
85625cae66
gnu: Add r-ggfortify. 
* gnu/packages/cran.scm (r-ggfortify): New variable.
 2019-05-10 13:31:02 +02:00
Ricardo Wurmus
c9487dfadc
gnu: Add r-plot3d. 
* gnu/packages/cran.scm (r-plot3d): New variable.
 2019-05-10 13:31:02 +02:00
Ricardo Wurmus
70debac5f1
gnu: Add r-enrichr. 
* gnu/packages/cran.scm (r-enrichr): New variable.
 2019-05-10 13:31:02 +02:00
Ricardo Wurmus
5bea832f72
gnu: Add r-dalex. 
* gnu/packages/cran.scm (r-dalex): New variable.
 2019-05-10 13:31:02 +02:00
Ricardo Wurmus
4d06ef4b71
gnu: Add r-rbowtie. 
* gnu/packages/bioconductor.scm (r-rbowtie): New variable.
 2019-05-10 13:31:02 +02:00
Ricardo Wurmus
8c42f8f6e8
gnu: Add r-iclusterplus. 
* gnu/packages/bioconductor.scm (r-iclusterplus): New variable.
 2019-05-10 13:31:01 +02:00
Mark H Weaver
b40a36baff
gnu: linux-libre: Update to 5.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.
(%linux-libre-hash): Update hash.
(%linux-libre-5.0-patches): Rename to ...
(%linux-libre-5.1-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-veyron)
(linux-libre-arm-omap2plus): Use %linux-libre-5.1-patches.
(vhba-module): Move definition below the kernel packages.
* gnu/packages/aux-files/linux-libre/5.0-arm-veyron.conf,
gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.1-arm-veyron.conf,
gnu/packages/aux-files/linux-libre/5.1-arm.conf,
gnu/packages/aux-files/linux-libre/5.1-arm64.conf,
gnu/packages/aux-files/linux-libre/5.1-i686.conf,
gnu/packages/aux-files/linux-libre/5.1-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
 2019-05-10 00:00:49 -04:00
Ivan Petkov
3d8033af42
gnu: rust: Update to 1.34.1. 
* gnu/packages/rust.scm (rust): Update to 1.34.1.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-05-10 00:44:09 +02:00
Ivan Petkov
4ed20d3cfe
gnu: rust: Make source derivations smaller. 
* gnu/packages/rust.scm (rust-source-pre-1.32): Delete procedure.
(rust-bootstrapped-package-pre-1.32): Delete procedure.
(rust-bootstrapped-package): Remove optional keys, and return an origin.
(rust-uri): New variable.
(mrustc): Change native-input "rust" to use source of rust-1.19.
(rust-1.19)[source]: Define package source.
(rust-1.20): Use rust-bootstrapped-package.
(rust-1.21): Likewise.
(rust-1.22): Likewise.
(rust-1.23): Likewise.
(rust-1.24): Likewise.
(rust-1.25): Likewise.
(rust-1.26): Likewise.
(rust-1.27): Likewise.
(rust-1.28): Likewise.
(rust-1.29): Likewise.
(rust-1.30): Likewise.
(rust-1.31): Likewise.
(rust-1.32): Likewise.
(rust-1.33): Likewise.
(rust-1.34): Likewise.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-05-10 00:44:09 +02:00
Ivan Petkov
bea01c0d2b
gnu: rust: Delete install logs and manifests. 
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[delete-install-logs]:
New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-05-10 00:44:08 +02:00