Ricardo Wurmus
6f15ea2415
gnu: Add r-reactome-db.
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* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
2019-12-18 15:29:07 +01:00
Efraim Flashner
7e9d6f0f3f
gnu: libmicrohttpd: Update to 0.9.69.
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* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.69.
2019-12-18 10:34:27 +02:00
Efraim Flashner
8fd6049403
gnu: cmst: Update to 2019.01.13.
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* gnu/packages/connman.scm (cmst): Update to 2019.01.13.
2019-12-18 10:29:28 +02:00
Efraim Flashner
92fe25130c
gnu: python-ecdsa: Actually run the test suite.
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* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: Replace
'check phase.
[native-inputs]: Add python-pytest.
2019-12-18 09:54:47 +02:00
Efraim Flashner
c57b8419f4
gnu: python-ecdsa: Update to 0.14.1.
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* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.14.1.
[inputs]: Move openssl ...
[native-inputs]: ... to here.
[propagated-inputs]: Add python-six.
2019-12-18 09:53:48 +02:00
Björn Höfling
356a79becc
swh: Fix API call for getting origin.
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When using the archival linter, git origins already in the archive where
not recognized due to an API change and where repeatedly asked for archival.
This is fixed here.
* guix/swh.scm (lookup-origin): Fix API URI for getting origin.
(<origin>): Fix comment with API URI example.
2019-12-17 23:29:32 +01:00
Mark H Weaver
ef6856ea72
gnu: linux-libre: Update to 5.3.17.
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* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.17.
(linux-libre-5.3-pristine-source): Update hash.
2019-12-17 17:24:23 -05:00
Mark H Weaver
a15adacb52
gnu: linux-libre@4.19: Update to 4.19.90.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.90.
(linux-libre-4.19-pristine-source): Update hash.
2019-12-17 17:23:42 -05:00
Mark H Weaver
0bb64e1796
gnu: linux-libre@4.14: Update to 4.14.159.
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* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.159.
(linux-libre-4.14-pristine-source): Update hash.
2019-12-17 17:22:36 -05:00
Ricardo Wurmus
29fd736a66
gnu: Add r-biobroom.
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* gnu/packages/bioconductor.scm (r-biobroom): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
48bcbef07a
gnu: Add r-bioassayr.
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* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
991554fc92
gnu: Add r-chemminer.
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* gnu/packages/bioconductor.scm (r-chemminer): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
d38775b13f
gnu: Add r-bigpint.
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* gnu/packages/bioconductor.scm (r-bigpint): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
820373dbc8
gnu: Add r-bigmemoryextras.
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* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
6ca6f8663b
gnu: Add r-biggr.
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* gnu/packages/bioconductor.scm (r-biggr): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
5aef09bd0e
gnu: Add r-hyperdraw.
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* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
75a8bb3185
gnu: Add r-hypergraph.
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* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
e823337c6e
gnu: Add r-rsbml.
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* gnu/packages/bioconductor.scm (r-rsbml): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
40fe63ad8a
gnu: Add r-bifet.
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* gnu/packages/bioconductor.scm (r-bifet): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
de9374b73c
gnu: Add r-bicare.
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* gnu/packages/bioconductor.scm (r-bicare): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
6bd50acf41
gnu: Add r-bhc.
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* gnu/packages/bioconductor.scm (r-bhc): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
75eb1149f3
gnu: Add r-bgx.
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* gnu/packages/bioconductor.scm (r-bgx): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
d11d6feafa
gnu: Add r-bgmix.
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* gnu/packages/bioconductor.scm (r-bgmix): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
1028bf0a05
gnu: Add r-rsvg.
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* gnu/packages/cran.scm (r-rsvg): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
59d485e118
gnu: Add r-shinycssloaders.
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* gnu/packages/cran.scm (r-shinycssloaders): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
96afb6c683
gnu: Add r-lim.
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* gnu/packages/cran.scm (r-lim): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
c686e53afe
gnu: Add r-diagram.
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* gnu/packages/cran.scm (r-diagram): New variable.
2019-12-17 20:02:15 +01:00
Ricardo Wurmus
5828dd030b
gnu: Add r-poibin.
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* gnu/packages/cran.scm (r-poibin): New variable.
2019-12-17 20:02:15 +01:00
Ricardo Wurmus
595036d9f9
gnu: Add libsbml.
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* gnu/packages/bioinformatics.scm (libsbml): New variable.
2019-12-17 20:02:11 +01:00
Jethro Cao
328dd9b7c2
gnu: Add love-nuklear.
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* gnu/packages/game-development.scm (love-nuklear): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-17 17:41:28 +01:00
Guillaume Le Vaillant
2963ae8e4a
gnu: txr: Update to 229.
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* gnu/packages/lisp.scm (txr): Update to 229.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-17 17:41:28 +01:00
Konrad Hinsen
a7c75b8dbf
gnu: gfortran: change to a hidden package
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* gnu/packages/gcc.scm (gfortran-4.8, gfortran-4.9)
(gfortran-5, gfortran-6, gfortran-7, gfortran-8)
(gfortran-9): Wrap in 'hidden-package'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-17 17:41:28 +01:00
Ludovic Courtès
3e313792aa
gnu: python-elasticsearch: Update to 7.1.0.
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* gnu/packages/python-web.scm (python-elasticsearch): Update to 7.1.0.
2019-12-17 17:41:27 +01:00
Ricardo Wurmus
aaa74ee57d
gnu: r-pracma: Update to 2.2.9.
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* gnu/packages/cran.scm (r-pracma): Update to 2.2.9.
2019-12-17 14:58:33 +01:00
Ricardo Wurmus
5722022f88
gnu: r-repr: Update to 1.0.2.
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* gnu/packages/cran.scm (r-repr): Update to 1.0.2.
2019-12-17 14:58:33 +01:00
Ricardo Wurmus
cd0e2815d5
gnu: r-ggeffects: Update to 0.14.0.
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* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.0.
[propagated-inputs]: Remove r-dplyr and r-rlang.
2019-12-17 14:58:33 +01:00
Ricardo Wurmus
f6e75823bd
gnu: r-dvmisc: Update to 1.1.4.
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* gnu/packages/cran.scm (r-dvmisc): Update to 1.1.4.
[propagated-inputs]: Add r-tab; remove r-purrr.
2019-12-17 14:58:33 +01:00
Ricardo Wurmus
6e963260ae
gnu: r-ttr: Update to 0.23-6.
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* gnu/packages/cran.scm (r-ttr): Update to 0.23-6.
2019-12-17 14:58:33 +01:00
Ricardo Wurmus
4d6ccb0000
gnu: r-argparser: Update to 0.6.
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* gnu/packages/cran.scm (r-argparser): Update to 0.6.
2019-12-17 14:58:32 +01:00
Ricardo Wurmus
f87c672789
gnu: r-ordinal: Update to 2019.12-10.
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* gnu/packages/cran.scm (r-ordinal): Update to 2019.12-10.
2019-12-17 14:58:32 +01:00
Ricardo Wurmus
f98480a975
gnu: r-seurat: Update to 3.1.2.
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* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.2.
2019-12-17 14:58:32 +01:00
Ricardo Wurmus
8a51ddce25
gnu: r-bh: Update to 1.72.0-1.
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* gnu/packages/statistics.scm (r-bh): Update to 1.72.0-1.
2019-12-17 14:58:32 +01:00
Ricardo Wurmus
3b21f5814c
gnu: Add r-tab.
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* gnu/packages/cran.scm (r-tab): New variable.
2019-12-17 14:58:32 +01:00
Ricardo Wurmus
5ba865a73f
gnu: Add r-gee.
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* gnu/packages/cran.scm (r-gee): New variable.
2019-12-17 14:58:32 +01:00
Efraim Flashner
5a0beca3aa
gnu: shotwell: Clean-up inputs.
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* gnu/packages/gnome.scm (shotwell)[arguments]: Add phase to skip
gtk-update-icon-cache.
[inputs]: Sort alphabetically. Move glib:bin ...
[native-inputs]: ... to here. Remove desktop-file-utils, gtk+:bin.
2019-12-17 10:23:02 +02:00
Efraim Flashner
914c8cdf07
gnu: dia: Fix version number.
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This commit is actually after to 0.97.3 release.
* gnu/packages/gnome.scm (dia)[version]: Use git-version.
[source]: Update to new source uri. Use git-file-name.
2019-12-17 09:57:21 +02:00
Efraim Flashner
4b3e91de2d
gnu: dia: Don't override bootstrap phase.
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* gnu/packages/gnome.scm (dia)[arguments]: Remove custom 'run-autogen
phgase. Add phase before 'bootstrap to not run configure.
2019-12-17 09:51:48 +02:00
Efraim Flashner
a315afa35b
gnu: dia: Fix-up inputs.
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* gnu/packages/gnome.scm (dia)[inputs]: Sort alphabetically. Move
glib:bin ...
[native-inputs]: ... to here. Sort alphabetically.
2019-12-17 09:50:37 +02:00
Efraim Flashner
80a06e6206
gnu: libidl: Hard-code name in source uri.
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* gnu/packages/gnome.scm (libidl)[source]: Hard-code name.
2019-12-17 09:37:34 +02:00
Efraim Flashner
ef2c55bbcf
gnu: libidl: Set upstream name.
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* gnu/packages/gnome.scm (libidl)[properties]: New field.
2019-12-17 09:37:34 +02:00