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Author SHA1 Message Date
Ricardo Wurmus
d4735e8c65
gnu: cd-hit: Update source tarball hash. 
* gnu/packages/bioinformatics.scm (cd-hit)[source]: Update hash.
 2017-11-13 16:02:35 +01:00
Kei Kebreau
62f0806f4c
Revert "gnu: totem: Enable parallel build." 
This reverts commit e5f748a6c0.
 2017-11-13 07:47:23 -05:00
Ludovic Courtès
a0fea77dbb
services: guix: Remove dependency on 'lsof'. 
This is a followup to b8f59cdc20:
'list-runtime-roots' no longer depends on 'lsof'.

* gnu/services/base.scm (<guix-configuration>)[lsof]: Remove.
(guix-shepherd-service): Adjust accordingly.
* doc/guix.texi (Base Services): Adjust accordingly.
* gnu/system.scm (%base-packages): Remove LSOF.
 2017-11-13 11:36:28 +01:00
Ludovic Courtès
b918473189
gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix): Update to ff23b47.
 2017-11-13 11:31:27 +01:00
Ludovic Courtès
ff23b47dbe
tests: 'guix-gc.sh' passes even when 'out' or 'drv' are defined as env vars. 
This fixes a test failure exhibited by
fb17a89912 whereby assignments to 'out' in
guix-gc.sh would go to the 'out' environment variable, when it exists,
which in turn prevents garbage collection of $out.

* tests/guix-gc.sh: Add 'unset' invocations.
 2017-11-13 10:10:13 +01:00
Efraim Flashner
6b7490b340
gnu: ibus: Update to 1.5.17. 
* gnu/packages/ibus.scm (ibus): Update to 1.5.17.
 2017-11-13 10:19:26 +02:00
Efraim Flashner
ce12b31157
gnu: ibus: Enable wayland support. 
* gnu/packages/ibus.scm (ibus)[arguments]: Add configure flag to enable
wayland support.
[inputs]: Add wayland.
 2017-11-13 10:19:26 +02:00
Kei Kebreau
f35bb0711c
gnu: libsoup: Update to 2.60.2. 
* gnu/packages/gnome.scm (libsoup): Update to 2.60.2.
 2017-11-12 21:20:24 -05:00
Ludovic Courtès
856b68bda9
list-runtime-roots: Ignore PIDs we cannot access. 
This allows running as non-root.
Fixes a regression introduced in b8f59cdc20.

* nix/scripts/list-runtime-roots.in (referenced-files): Handle EACCES in
addition to ENOENT.
 2017-11-12 23:53:12 +01:00
Leo Famulari
d0b87779f0
download: Use HTTPS for the first ImageMagick mirror. 
* guix/download.scm (%mirrors)[imagemagick]: Use HTTPS for <sunsite.icm.edu.pl>.
 2017-11-12 17:50:01 -05:00
Leo Famulari
ecc585711e
download: Try FTP servers last. 
* guix/download.scm (%mirrors)[savannah, kernel.org, apache, xorg, imagemagick]:
Re-arrange so that FTP is last.
 2017-11-12 17:50:01 -05:00
Leo Famulari
c0d1fa64d0
gnu: imagemagick: Update to 6.9.9-23. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-23.
 2017-11-12 17:50:01 -05:00
Ludovic Courtès
fb17a89912
list-runtime-roots: Canonicalize store items. 
Looking at 'addAdditionalRoots' in libstore/gc.cc, it looks like it
should always have been this way.  In practice it probably doesn't make
much of a difference.

* nix/scripts/list-runtime-roots.in (canonicalize-store-item): New
procedure.
<top level>: Use it.
 2017-11-12 22:42:17 +01:00
Ludovic Courtès
b8f59cdc20
list-runtime-roots: Do not use 'lsof'. 
This makes things a bit faster (0.8s instead of 1.4s on my laptop).

* nix/scripts/list-runtime-roots.in (lsof-roots): Remove.
(proc-fd-roots): Return the empty list when 'scandir' returns #f.
(referenced-files): New procedure.
Use it at the top level.
 2017-11-12 22:42:17 +01:00
Ludovic Courtès
6a98b9f34e
doc: Better explain GC roots. 
Fixes <https://bugs.gnu.org/24194>.
Reported by J. Eppler <j.eppler@openmailbox.org>.

* doc/guix.texi (Invoking guix-daemon): Add index entries for GC roots.
Add xref to "Invoking guix gc".
(Invoking guix gc): Add the string "GC roots"; mention /var/guix/gcroots.
(Additional Build Options): Add index entries.  Better explain --root.
(Invoking guix environment): Add xref to "Invoking guix gc".
 2017-11-12 22:42:17 +01:00
Leo Famulari
2560aa7adb
gnu: Remove unrar. 
This package is abandoned upstream and contains serious bugs:

http://seclists.org/oss-sec/2017/q3/329
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14120
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14121
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14122

* gnu/packages/compression.scm (unrar): Remove variable.
 2017-11-12 16:17:08 -05:00
Rutger Helling
8420c7a356
gnu: linux-libre: Change URL to HTTPS. 
* gnu/packages/linux.scm (linux-libre): Change URL to HTTPS.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-12 15:46:44 -05:00
Efraim Flashner
1650cf9284
gnu: mupdf: Unbundle mujs. 
* gnu/packages/pdf.scm (mupdf)[source]: Remove bundled mujs.
[inputs]: Add mujs.
 2017-11-12 19:39:21 +02:00
Efraim Flashner
89ba894eb3
gnu: Add mujs. 
* gnu/packages/javascript.scm (mujs): New variable.
 2017-11-12 19:39:20 +02:00
Efraim Flashner
76379dcace
gnu: mupdf: Use https. 
* gnu/packages/pdf.scm (mupdf)[source]: Use https.
[home-page]: Same.
 2017-11-12 19:39:20 +02:00
Efraim Flashner
31f248fa2c
gnu: pdf.scm: Arrange modules alphabetically. 
* gnu/packages/pdf.scm: Arrange modules alphabetically.
 2017-11-12 19:39:17 +02:00
Efraim Flashner
b07bfd06ee
gnu: lash: Don't build static libraries. 
* gnu/packages/audio.scm (lash)[arguments]: Add configure-flag to
disable static libraries.
 2017-11-12 12:04:49 +02:00
Efraim Flashner
44df780768
gnu: lash: Don't build lashd. 
This fixes bug#28174.

* gnu/packages/audio.scm (lash)[arguments]: Add phase to skip building lashd.
 2017-11-12 12:04:46 +02:00
Kei Kebreau
c7b433de47
gnu: glib-networking: Update to 2.54.1. 
* gnu/packages/gnome.scm (glib-networking): Update to 2.54.1.
 2017-11-12 01:17:10 -05:00
Efraim Flashner
1e2a36e1b0
gnu: ffmpeg: Reduce the size of the closure. 
* gnu/packages/video.scm (ffmpeg)[arguments]: Add new configure flags to
disable the html man pages and the static libraries.
 2017-11-12 07:11:29 +02:00
Efraim Flashner
7e0d513fb9
gnu: mupdf: Use Texinfo for the description. 
* gnu/packages/pdf.scm (mupdf)[description]: Use Texinfo to mark up the
description.
 2017-11-12 07:11:25 +02:00
Leo Famulari
b7ca42aa99
gnu: w3m: Find an editor in the environment. 
* gnu/packages/w3m.scm (w3m)[arguments]: Pass an empty value for --with-editor
in #:configure-flags.
[source]: Use git-file-name.
 2017-11-11 23:04:39 -05:00
Leo Famulari
882d921344
gnu: mupdf: Actually fix CVE-2017-15587. 
The original fix could be removed by an optimizing compiler.

* gnu/packages/patches/mupdf-CVE-2017-15587.patch: Revise patch.
 2017-11-11 22:34:24 -05:00
Tobias Geerinckx-Rice
07cc9245e6
gnu: libusb-compat: Use the same home page as libusb. 
* gnu/packages/libusb.scm (libusb-compat)[home-page]: Update.
 2017-11-12 03:25:49 +01:00
Tobias Geerinckx-Rice
5ade9bc769
gnu: fcgi: Fix typo in description. 
* gnu/packages/web.scm (fcgi)[description]: Fix typo.
 2017-11-12 03:25:48 +01:00
Tobias Geerinckx-Rice
d1b5043947
gnu: fcgi: Use archived home page fork. 
* gnu/packages/web.scm (fcgi)[home-page]: Use archived version.
 2017-11-12 03:25:48 +01:00
Tobias Geerinckx-Rice
9c2917f9e7
gnu: lynx: Use new home page. 
* gnu/packages/web-browsers.scm (lynx)[home-page]: Update.
 2017-11-12 03:25:47 +01:00
Tobias Geerinckx-Rice
6862e4bfe7
gnu: perl-mime-types: Update to 2.14. 
* gnu/packages/perl.scm (perl-mime-types): Update to 2.14.
 2017-11-12 03:25:47 +01:00
Ludovic Courtès
f9035ef213
gnu: mailutils: Update to 3.4. 
* gnu/packages/mail.scm (mailutils): Update to 3.4.
 2017-11-11 23:21:54 +01:00
Ludovic Courtès
cda2e2c719
gnu: emacs-emms: Update to 4.4. 
* gnu/packages/emacs.scm (emms): Update to 4.4.
 2017-11-11 23:21:54 +01:00
Jan Nieuwenhuizen
327df26fbf
gnu: nyacc: Update to 0.82.4. 
* gnu/packages/mes.scm (nyacc): Update to 0.82.4.
 2017-11-11 23:11:04 +01:00
Ludovic Courtès
b1488c7653
git: Check whether 'clone-init-options' is defined. 
This is a followup to 195f0d05c3.

* guix/git.scm (clone*): Check whether 'clone-init-options' is defined
before using it.
 2017-11-11 20:09:25 +01:00
Leo Famulari
4564782c3d
gnu: nvi: Build with support for Unicode text. 
* gnu/packages/nvi.scm (nvi)[arguments]: Pass '--enable-widechar'
to #:configure-flags.
 2017-11-11 12:00:37 -05:00
Ludovic Courtès
ae0307f7c2
tests: Adjust to new unbound-variable error message. 
This is a followup to dc856223f5.

* tests/guix-package.sh: Adjust unbound-variable message regexp.
 2017-11-11 15:33:47 +01:00
Ludovic Courtès
4ad3a3f995
tests: Refer to "time@1.8". 
This is a followup to dd00e0919f.

* tests/guix-build.sh: Refer to "time@1.8".
 2017-11-11 15:33:04 +01:00
Ludovic Courtès
65a19abf3f
download: Work around more bogus HTTP handling in Guile 2.2 <= 2.2.2. 
Reported by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00190.html>.

* guix/build/download.scm (guile-2.2) [write-request-line]: Backport
Guile commit 6ad28ae3bc6a6d9e95ab7d70510d12c97673a143.
 2017-11-11 15:20:02 +01:00
Marius Bakke
56f35d92f5
gnu: lvm2: Update to 2.02.176. 
* gnu/packages/linux.scm (lvm2): Update to 2.02.176.
 2017-11-11 07:40:55 +01:00
Marius Bakke
ec03062171
gnu: libstaroffice: Update to 0.0.5. 
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.5.
 2017-11-11 07:18:34 +01:00
Marius Bakke
45d5c80253
gnu: libvisio: Update to 0.1.6. 
* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.6.
[source](patches): Remove.
* gnu/packages/patches/libvisio-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-11-11 07:15:39 +01:00
Marius Bakke
7a9283a619
gnu: libetonyek: Update to 0.1.7. 
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.7.
[source](patches): Remove.
[arguments]<#:phases>: Remove.
[native-inputs]: Remove AUTOCONF and AUTOMAKE.
* gnu/packages/patches/libetonyek-build-with-mdds-1.2.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-11-11 07:13:01 +01:00
Rutger Helling
074ff555ab
gnu: libreoffice: Update to 5.3.7.2 and enable GTK3. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.7.2
[source]: Change URL to HTTPS.
[inputs]: Add gtk+.
[configure-flags]: Remove "--disable-gtk3".

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-11-11 07:03:06 +01:00
Alex Vong
ce1ac8eea6
gnu: python2-rpython: Update to 0.2.1. 
* gnu/packages/python.scm (python2-rpython): Update to 0.2.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-11-11 07:00:22 +01:00
Alex Vong
e65acb3124
gnu: python-sympy: Update to 1.1.1. 
* gnu/packages/python.scm (python-sympy, python2-sympy): Update to 1.1.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-11-11 06:57:00 +01:00
Marius Bakke
e077e7da7f
gnu: python-sqlparse: Fix syntax error. 
This is a follow-up to commit 8d688cd27f.

* gnu/packages/python.scm (python-sqlparse)[arguments]: Add missing lambda.
 2017-11-11 06:40:50 +01:00
Tobias Geerinckx-Rice
8d688cd27f
gnu: python-sqlparse: Update to 0.2.4. 
* gnu/packages/python.scm (python-sqlparse, python2-sqlparse): Update to
0.2.4.
[arguments]: Don't invoke ‘2to3’.
 2017-11-11 05:17:59 +01:00