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429 commits

Author SHA1 Message Date
Ricardo Wurmus
f5f440312d
gnu: Add r-ggcyto. 
* gnu/packages/bioconductor.scm (r-ggcyto): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
15ac0c195c
gnu: Add r-ncdfflow. 
* gnu/packages/bioconductor.scm (r-ncdfflow): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b4aee31dcb
gnu: Add r-cytolib. 
* gnu/packages/bioconductor.scm (r-cytolib): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b4a22ccaaa
gnu: Add r-multidataset. 
* gnu/packages/bioconductor.scm (r-multidataset): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
e5d722fb4c
gnu: Add r-biocversion. 
* gnu/packages/bioconductor.scm (r-biocversion): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
8e6f63dd83
gnu: Add r-activepathways. 
* gnu/packages/bioconductor.scm (r-activepathways): New variable.
 2019-12-14 13:35:53 +01:00
Ricardo Wurmus
72b67e0b36
gnu: Add r-activedriverwgs. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): New variable.
 2019-12-13 22:41:38 +01:00
Ricardo Wurmus
bf770d9240
gnu: r-metap: Update to 1.2. 
* gnu/packages/cran.scm (r-metap): Move this from here...
* gnu/packages/bioconductor.scm (r-metap): ...to here and update to 1.2.
[propagated-inputs]: Add r-mutoss and r-tfisher.
 2019-12-09 18:11:20 +01:00
Ricardo Wurmus
f21147625f
gnu: Add r-mutoss. 
* gnu/packages/bioconductor.scm (r-mutoss): New variable.
 2019-12-09 18:11:19 +01:00
Ricardo Wurmus
41728d234b
gnu: r-all: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-all)[source]: Use bioconductor-uri.
 2019-12-04 09:36:34 +01:00
Ricardo Wurmus
545e67ac03
gnu: r-hsmmsinglecell: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-hsmmsinglecell)[source]: Use
bioconductor-uri.
 2019-12-04 09:36:15 +01:00
Ricardo Wurmus
b86f77469b
gnu: r-arrmdata: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-arrmdata)[source]: Use bioconductor-uri.
 2019-12-04 09:35:59 +01:00
Ricardo Wurmus
ced61edf5d
gnu: r-abadata: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-abadata)[source]: Use bioconductor-uri.
 2019-12-04 09:35:44 +01:00
Ricardo Wurmus
eed2766a45
gnu: r-do-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-do-db)[source]: Use bioconductor-uri.
 2019-12-04 09:35:26 +01:00
Ricardo Wurmus
25f567a85a
gnu: r-illuminahumanmethylationepicmanifest: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest)[source]:
Use bioconductor-uri.
 2019-12-04 09:35:08 +01:00
Ricardo Wurmus
6aca4054e0
gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19)[source]: Use
bioconductor-uri.
 2019-12-04 09:34:47 +01:00
Ricardo Wurmus
c271d99025
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:34:13 +01:00
Ricardo Wurmus
1afdf41b49
gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene)[source]:
Use bioconductor-uri.
 2019-12-04 09:33:54 +01:00
Ricardo Wurmus
d78db08862
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene)[source]:
Use bioconductor-uri.
 2019-12-04 09:33:35 +01:00
Ricardo Wurmus
f2580a1385
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:33:09 +01:00
Ricardo Wurmus
717d7cda9d
gnu: r-genelendatabase: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-genelendatabase)[source]: Use
bioconductor-uri.
 2019-12-04 09:32:48 +01:00
Ricardo Wurmus
e7a8cf2e6e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:32:22 +01:00
Ricardo Wurmus
411be88bf3
gnu: r-org-mm-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-mm-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:32:03 +01:00
Ricardo Wurmus
f53becc6d8
gnu: r-org-hs-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-hs-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:31:46 +01:00
Ricardo Wurmus
7bb65a2227
gnu: r-org-dr-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-dr-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:31:19 +01:00
Ricardo Wurmus
b0dfc79b0d
gnu: r-org-dm-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-dm-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:30:58 +01:00
Ricardo Wurmus
1c05e637a4
gnu: r-org-ce-eg-db: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-org-ce-eg-db)[source]: Use
bioconductor-uri.
 2019-12-04 09:30:35 +01:00
Ricardo Wurmus
f83404bc5b
gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:29:56 +01:00
Ricardo Wurmus
51dc4a2d70
gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked)[source]:
Use bioconductor-uri.
 2019-12-04 09:29:26 +01:00
Ricardo Wurmus
21f6dae73d
gnu: r-bsgenome-mmusculus-ucsc-mm9: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:28:54 +01:00
Ricardo Wurmus
a47646bd05
gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked)[source]:
Use bioconductor-uri.
 2019-12-04 09:28:34 +01:00
Ricardo Wurmus
88e7c7db59
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:28:04 +01:00
Ricardo Wurmus
bf05ece1a2
gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked)[source]:
Use bioconductor-uri.
 2019-12-04 09:27:15 +01:00
Ricardo Wurmus
87073b7ecb
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
 2019-12-04 09:26:22 +01:00
Ricardo Wurmus
149f351f38
gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6)[source]:
Use bioconductor-uri.
[arguments]: Permit substitution.
 2019-12-04 09:25:10 +01:00
Ricardo Wurmus
6998ecba74
gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10)[source]: Use
bioconductor-uri.
[arguments]: Permit substitution.
 2019-12-04 09:24:09 +01:00
Vagrant Cascadian
b5b0ee3bd0
gnu: r-unifiedwmwqpcr: Fix typo in description. 
* gnu/packages/bioconductor (r-unifiedwmwqpcr)[description]: Fix typo.
 2019-11-11 19:02:45 -08:00
Ricardo Wurmus
ca2b1dcfcd
gnu: r-xcms: Update to 3.6.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.2.
 2019-10-21 18:23:07 +02:00
Ricardo Wurmus
b9f39ac986
gnu: r-mlinterfaces: Update to 1.64.1. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.1.
 2019-10-18 20:35:26 +02:00
zimoun
86fb2c63be
gnu: Add r-unifiedwmwqpcr. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-15 14:10:27 +02:00
zimoun
16e2e4f27b
gnu: Add r-htqpcr. 
* gnu/packages/bioconductor.scm (r-htqpcr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-10-15 14:10:21 +02:00
Ricardo Wurmus
40be965e28
gnu: Add r-phastcons100way-ucsc-hg19. 
* gnu/packages/bioconductor.scm (r-phastcons100way-ucsc-hg19): New variable.
 2019-10-14 18:09:37 +02:00
Ricardo Wurmus
326746e14c
gnu: r-variancepartition: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1.
[propagated-inputs]: Add r-biocparallel.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus
eb796f53ef
gnu: r-mixomics: Update to 6.8.5. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus
1c2e573302
gnu: r-regioner: Update to 1.16.5. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.
 2019-10-06 23:08:47 +02:00
Ricardo Wurmus
d80a15696b
gnu: Add r-variancepartition. 
* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
 2019-09-15 22:57:47 +02:00
Ricardo Wurmus
2a360cf6ac
gnu: Add r-wavetiling. 
* gnu/packages/bioconductor.scm (r-wavetiling): New variable.
 2019-09-15 22:54:21 +02:00
Ricardo Wurmus
f5349b4d5a
gnu: Add r-genomegraphs. 
* gnu/packages/bioconductor.scm (r-genomegraphs): New variable.
 2019-09-15 22:51:52 +02:00
Ricardo Wurmus
4c63eeb8a4
gnu: Add r-oligo. 
* gnu/packages/bioconductor.scm (r-oligo): New variable.
 2019-09-15 22:50:31 +02:00
Ricardo Wurmus
d6a5d9b24f
gnu: Add r-affxparser. 
* gnu/packages/bioconductor.scm (r-affxparser): New variable.
 2019-09-15 22:50:25 +02:00