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guix/gnu/packages/patches
History
Ricardo Wurmus 191c710139 gnu: Add crossmap. 
* gnu/packages/bioinformatics.scm (crossmap): New variable.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-03-02 17:23:56 +01:00
..
abiword-explictly-cast-bools.patch gnu: Add AbiWord. 2014-09-09 13:55:20 +02:00
abiword-link-plugins-against-backend.patch gnu: Add AbiWord. 2014-09-09 13:55:20 +02:00
abiword-no-include-glib-internal-headers.patch gnu: Add AbiWord. 2014-09-09 13:55:20 +02:00
abiword-pass-no-undefined-to-linker.patch gnu: Add AbiWord. 2014-09-09 13:55:20 +02:00
abiword-use-proper-png-api.patch gnu: Add AbiWord. 2014-09-09 13:55:20 +02:00
abiword-wmf-version-lookup-fix.patch gnu: Add AbiWord. 2014-09-09 13:55:20 +02:00
aegis-constness-error.patch gnu: Add Aegis. 2014-07-18 06:45:33 +02:00
aegis-perl-tempdir1.patch gnu: Add Aegis. 2014-07-18 06:45:33 +02:00
aegis-perl-tempdir2.patch gnu: Add Aegis. 2014-07-18 06:45:33 +02:00
aegis-test-fixup-1.patch gnu: Add Aegis. 2014-07-18 06:45:33 +02:00
aegis-test-fixup-2.patch gnu: Add Aegis. 2014-07-18 06:45:33 +02:00
alsa-lib-mips-atomic-fix.patch
apr-skip-getservbyname-test.patch
ath9k-htc-firmware-binutils.patch gnu: cross-base: Apply Qualcomm's patches for Binutils and GCC. 2014-11-11 22:36:49 +01:00
ath9k-htc-firmware-gcc.patch gnu: cross-base: Apply Qualcomm's patches for Binutils and GCC. 2014-11-11 22:36:49 +01:00
ath9k-htc-firmware-objcopy.patch gnu: Add ath9k-htc-firmware. 2014-10-29 00:31:23 +01:00
automake-skip-amhello-tests.patch
avahi-localstatedir.patch
avrdude-fix-libusb.patch gnu: Add AVRDUDE 2014-08-11 18:38:34 +02:00
bigloo-gc-shebangs.patch
binutils-ld-new-dtags.patch
binutils-loongson-workaround.patch
bowtie-fix-makefile.patch gnu: bowtie: fix build errors 2015-01-30 10:45:27 +01:00
cdparanoia-fpic.patch
chmlib-inttypes.patch gnu: chmlib: Patch for compilation on mips. 2015-02-21 10:17:10 +01:00
clucene-contribs-lib.patch gnu: clucene: Enable the contrib-libs. 2014-10-06 23:26:15 +02:00
clucene-pkgconfig.patch gnu: clucene: Add patch to indicate linking with clucene-shared, not only 2014-04-16 10:58:31 +02:00
cmake-fix-tests.patch
coreutils-dummy-man.patch gnu: coreutils: Update to 8.23. 2014-08-03 21:01:27 -04:00
cpio-CVE-2014-9112-pt1.patch gnu: cpio: Add fixes for CVE-2014-9112. 2014-12-30 14:48:13 -05:00
cpio-CVE-2014-9112-pt2.patch gnu: cpio: Add fixes for CVE-2014-9112. 2014-12-30 14:48:13 -05:00
cpio-CVE-2014-9112-pt3.patch gnu: cpio: Add fixes for CVE-2014-9112. 2014-12-30 14:48:13 -05:00
cpio-CVE-2014-9112-pt4.patch gnu: cpio: Add fixes for CVE-2014-9112. 2014-12-30 14:48:13 -05:00
cpio-CVE-2014-9112-pt5.patch gnu: cpio: Add fixes for CVE-2014-9112. 2014-12-30 14:48:13 -05:00
cpio-gets-undeclared.patch
cpufrequtils-fix-aclocal.patch gnu: Add cpufrequtils. 2015-02-25 15:27:48 +01:00
crossmap-allow-system-pysam.patch gnu: Add crossmap. 2015-03-02 17:23:56 +01:00
cssc-gets-undeclared.patch gnu: Add cssc. 2014-05-28 18:50:00 +02:00
cssc-missing-include.patch gnu: Add cssc. 2014-05-28 18:50:00 +02:00
curl-gss-api-fix.patch gnu: curl: Update to 7.40.0. 2015-01-11 11:12:27 -05:00
cursynth-wave-rand.patch gnu: cursynth: Upgrade to 1.5. 2014-06-25 14:25:26 -05:00
dbus-localstatedir.patch
dfu-programmer-fix-libusb.patch gnu: Add dfu-programmer 2014-10-02 10:46:29 +02:00
diffutils-gets-undeclared.patch
doxygen-test.patch gnu: Add doxygen. 2014-04-25 00:03:36 +02:00
doxygen-tmake.patch gnu: Add doxygen. 2014-04-25 00:03:36 +02:00
duplicity-piped-password.patch gnu: duplicity: Fix and disable some tests. 2014-09-28 18:24:25 -05:00
duplicity-test_selection-tmp.patch gnu: duplicity: Fix and disable some tests. 2014-09-28 18:24:25 -05:00
eudev-rules-directory.patch gnu: eudev: Honor $EUDEV_RULES_DIRECTORY. 2014-09-13 10:47:58 +02:00
findutils-absolute-paths.patch
flashrom-use-libftdi1.patch gnu: Add flashrom. 2014-08-05 20:00:29 -04:00
flex-bison-tests.patch
gawk-shell.patch
gcc-cross-environment-variables.patch
glib-tests-desktop.patch gnu: glib: Upgrade to 2.40.0. 2014-07-02 13:58:02 -05:00
glib-tests-gapplication.patch gnu: glib: Work around unreliable GIO test. 2014-12-03 22:52:19 +01:00
glib-tests-homedir.patch
glib-tests-prlimit.patch
glib-tests-timer.patch gnu: glib: Fix build on i686. 2014-07-10 17:03:42 -05:00
glibc-bootstrap-system.patch
glibc-CVE-2012-3406.patch gnu: glibc: Add fixes for CVE-2014-7817 and CVE-2012-3406. 2014-12-30 13:57:40 -05:00
glibc-CVE-2014-7817.patch gnu: glibc: Add fixes for CVE-2014-7817 and CVE-2012-3406. 2014-12-30 13:57:40 -05:00
glibc-ldd-x86_64.patch
glibc-locales.patch gnu: Add glibc-locales. 2015-02-11 11:19:29 +01:00
glibc-mips-dangling-vfork-ref.patch gnu: glibc: MIPS: Avoid a dangling `vfork@GLIBC_2.0' reference. 2014-12-30 19:58:05 -05:00
gmp-arm-asm-nothumb.patch gnu: gmp: Apply fixes for armhf. 2015-01-07 12:34:19 -05:00
gnunet-fix-scheduler.patch
gnunet-fix-tests.patch
gobject-introspection-absolute-shlib-path.patch gnu: gobject-introspection: Update to 1.42.0 and add new patch. 2015-01-18 17:44:29 +01:00
gobject-introspection-cc.patch
gobject-introspection-girepository.patch gnu: gobject-introspection: Add patch. 2015-01-23 18:33:59 +01:00
grub-gets-undeclared.patch
gstreamer-0.10-bison3.patch
gstreamer-0.10-silly-test.patch
gtkglext-disable-disable-deprecated.patch
guile-1.8-cpp-4.5.patch
guile-arm-fixes.patch gnu: guile: Apply fixes for arm. 2015-01-06 19:47:09 -05:00
guile-default-utf8.patch
guile-linux-syscalls.patch linux-modules: Correctly propagate error code from 'init_module'. 2014-11-28 15:08:56 +01:00
guile-relocatable.patch
guix-test-networking.patch
hop-bigloo-4.0b.patch
icecat-CVE-2015-0822.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0827-pt-1.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0827-pt-2.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0827-pt-3.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0831-pt-1.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0831-pt-2.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-01.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-02.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-03.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-04.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-05.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-06.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-07.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-08.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-09.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-10.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
icecat-CVE-2015-0836-pt-11.patch gnu: icecat: Apply fixes for CVE-2015-{0822,0827,0831,0836}. 2015-02-26 00:39:31 -05:00
irrlicht-mesa-10.patch gnu: irrlicht: Fix build with mesa-10. 2014-12-26 15:50:32 -05:00
jbig2dec-ignore-testtest.patch gnu: Add jbig2dec 2014-09-15 08:54:02 +02:00
kmod-module-directory.patch gnu: kmod: 'kmod static-nodes' command honors $LINUX_MODULE_DIRECTORY. 2014-11-02 22:06:27 +01:00
libarchive-CVE-2013-0211.patch gnu: libarchive: Apply fixes including for CVE-2013-0211. 2014-10-11 23:21:37 -04:00
libarchive-fix-lzo-test-case.patch gnu: libarchive: Apply fixes including for CVE-2013-0211. 2014-10-11 23:21:37 -04:00
libarchive-mtree-filename-length-fix.patch gnu: libarchive: Apply fixes including for CVE-2013-0211. 2014-10-11 23:21:37 -04:00
libbonobo-activation-test-race.patch gnu: libbonobo: Skip failing test case. 2014-07-02 13:52:12 -05:00
libcanberra-sound-theme-freedesktop.patch gnu: libcanberra: Add default sounds support. 2015-01-12 18:00:08 +01:00
libevent-dns-tests.patch
libmad-mips-newgcc.patch
liboop-mips64-deplibs-fix.patch
librep-rules.mk.patch gnu: Add librep. 2015-02-03 22:13:00 +08:00
libssh-CVE-2014-0017.patch
libtheora-config-guess.patch
libtool-skip-tests.patch gnu: libtool: Skip nopic test on ARM and MIPS systems. 2015-01-07 18:00:49 -05:00
libvpx-fix-armhf-link.patch gnu: libvpx: Apply bug fixes. 2015-02-02 03:54:42 -05:00
libvpx-fix-ssse3-quantize.patch gnu: libvpx: Apply bug fixes. 2015-02-02 03:54:42 -05:00
libvpx-vp9-out-of-bounds-access.patch gnu: libvpx: Apply bug fixes. 2015-02-02 03:54:42 -05:00
lm-sensors-hwmon-attrs.patch gnu: Add lm-sensors. 2014-08-07 20:41:39 -04:00
lua51-liblua-so.patch gnu: Have lua-5.1 compile a .so 2014-09-11 11:59:15 +02:00
luajit-no_ldconfig.patch gnu: Fix luajit installation 2015-02-26 00:43:02 +01:00
luajit-symlinks.patch gnu: Fix luajit installation 2015-02-26 00:43:02 +01:00
luit-posix.patch
m4-gets-undeclared.patch
make-impure-dirs.patch
mc-fix-ncurses-build.patch
mcron-install.patch
mhash-keygen-test-segfault.patch gnu: Add mcrypt, libmcrypt, and libmhash. 2014-05-26 01:15:53 -05:00
mit-krb5-init-fix.patch
module-init-tools-moduledir.patch gnu: module-init-tools: Fix $LINUX_MODULE_DIRECTORY handling in 'depmod'. 2014-07-23 22:27:17 +02:00
mpc123-initialize-ao.patch
mupdf-buildsystem-fix.patch gnu: Add mupdf. 2014-09-15 09:04:19 +02:00
mutt-CVE-2014-9116.patch gnu: mutt: Add fix for CVE-2014-9116. 2014-12-30 15:18:37 -05:00
net-tools-bitrot.patch gnu: net-tools: Allow compilation with current libc and GCC. 2014-10-06 23:11:41 +02:00
ngircd-handle-zombies.patch gnu: Add ngircd. 2015-02-05 17:08:39 +01:00
ngircd-no-dns-in-tests.patch gnu: Add ngircd. 2015-02-05 17:08:39 +01:00
ninja-tests.patch gnu: ninja: Disable testcase SubprocessTest.InterruptChild. 2015-01-15 11:05:18 +08:00
nss-pkgconfig.patch gnu: Add nss. 2015-01-11 19:15:34 +08:00
nvi-assume-preserve-path.patch gnu: Add nvi. 2014-09-02 21:32:30 +02:00
nvi-db4.patch gnu: nvi: Fix Berkely DB compatability issues. 2015-01-23 09:44:42 +01:00
nvi-dbpagesize-binpower.patch gnu: nvi: Fix Berkely DB compatability issues. 2015-01-23 09:44:42 +01:00
openexr-missing-samples.patch gnu: Add OpenEXR and IlmBase. 2015-02-25 16:58:50 +01:00
orpheus-cast-errors-and-includes.patch gnu: Add orpheus. 2014-08-12 00:28:39 -05:00
ots-no-include-missing-file.patch gnu: Add ots. 2014-09-09 13:40:04 +02:00
patchelf-page-size.patch gnu: patchelf: Update to 0.8. 2015-01-06 18:40:42 -05:00
patchelf-rework-for-arm.patch gnu: patchelf: On ARM, apply experimental patch to get it working. 2015-01-07 12:38:11 -05:00
patchutils-xfail-gendiff-tests.patch gnu: Add patchutils and quilt 2014-04-07 20:41:25 -05:00
perl-no-sys-dirs.patch
perl-tk-x11-discover.patch gnu: perl-tk: Patch for i686 2014-05-12 16:15:31 -05:00
petsc-fix-threadcomm.patch gnu: Add petsc 2014-05-01 15:27:30 -05:00
pingus-sdl-libs-config.patch gnu: Add pingus. 2014-06-13 14:11:14 -05:00
plotutils-libpng-jmpbuf.patch
polkit-drop-test.patch gnu: Add polkit. 2014-11-09 18:55:31 +01:00
procps-make-3.82.patch
pulseaudio-CVE-2014-3970.patch gnu: pulseaudio: Fix CVE-2014-3970 and intermittent test failures. 2014-10-26 02:55:38 -04:00
pulseaudio-fix-mult-test.patch gnu: pulseaudio: Fix CVE-2014-3970 and intermittent test failures. 2014-10-26 02:55:38 -04:00
pybugz-encode-error.patch gnu: pybugz: Add fixlet patches. 2014-05-05 17:12:55 +02:00
pybugz-stty.patch gnu: pybugz: Add fixlet patches. 2014-05-05 17:12:55 +02:00
pyqt-configure.patch gnu: Add python-pyqt. 2015-01-25 20:10:03 +01:00
python-fix-tests.patch
python-libffi-mips-n32-fix.patch
python-sqlite-3.8.4-test-fix.patch gnu: python: Add sqlite input. 2014-12-02 08:33:31 -06:00
python2-pygobject-2-gi-info-type-error-domain.patch gnu: Add python-pygobject. 2014-12-02 08:35:06 -06:00
python2-rdflib-drop-sparqlwrapper.patch gnu: Add python2-rdflib. 2015-02-25 00:58:20 +01:00
python2-sqlite-3.8.4-test-fix.patch gnu: python: Add sqlite input. 2014-12-02 08:33:31 -06:00
qt4-tests.patch
ratpoison-shell.patch
readline-link-ncurses.patch
ripperx-libm.patch
scheme48-tests.patch
scotch-test-threading.patch gnu: Add scotch package. 2014-05-19 00:15:11 -05:00
sdl-libx11-1.6.patch gnu: sdl: Fix incompatibility with libx11-1.6. 2014-12-26 00:34:44 -05:00
slim-config.patch
slim-session.patch
slim-sigusr1.patch
soprano-find-clucene.patch gnu: soprano: Add input clucene. 2014-04-28 20:20:52 +02:00
source-highlight-regexrange-test.patch
superlu-dist-scotchmetis.patch gnu: Add superlu-dist package. 2014-05-19 00:15:11 -05:00
tcsh-fix-autotest.patch
teckit-cstdio.patch
texi2html-document-encoding.patch gnu: Add texi2html. 2014-08-11 12:22:53 -05:00
texi2html-i18n.patch gnu: texi2html: Fix tests in the absense of gettext. 2014-08-16 11:07:03 -05:00
udev-gir-libtool.patch gnu: Add udev. 2014-06-22 15:02:20 +02:00
unzip-CVE-2014-8139.patch gnu: unzip: Add fixes for CVE-2014-{8139,8140,8141}. 2014-12-30 14:48:13 -05:00
unzip-CVE-2014-8140.patch gnu: unzip: Add fixes for CVE-2014-{8139,8140,8141}. 2014-12-30 14:48:13 -05:00
unzip-CVE-2014-8141.patch gnu: unzip: Add fixes for CVE-2014-{8139,8140,8141}. 2014-12-30 14:48:13 -05:00
util-linux-tests.patch gnu: util-linux: Update to 2.25.2. 2015-01-23 16:29:19 +01:00
vpnc-script.patch
vtk-mesa-10.patch gnu: vtk: Fix build with mesa-10. 2014-12-27 11:18:29 -05:00
w3m-fix-compile.patch
weex-vacopy.patch gnu: Add weex. 2015-02-21 19:24:54 +01:00
wicd-urwid-1.3.patch gnu: wicd: Fix curses client to work with urwid 1.3. 2015-02-06 15:26:56 -05:00
wmctrl-64-fix.patch gnu: Add wmctrl. 2014-12-10 00:37:46 +03:00
xf86-video-ark-remove-mibstore.patch gnu: xf86-video-ark: Update to 0.7.5. 2014-12-19 23:28:15 -05:00
xf86-video-ast-remove-mibstore.patch gnu: xf86-video-ast: Add patch needed for upcoming xorg-server update. 2014-12-19 23:28:15 -05:00
xf86-video-geode-glibc-2.20.patch gnu: Resurrect xf86-video-geode and update to 2.11.16. 2014-12-19 23:28:15 -05:00
xf86-video-glint-remove-mibstore.patch gnu: xf86-video-glint: Update to 1.2.8. 2014-12-19 23:28:15 -05:00
xf86-video-i128-remove-mibstore.patch gnu: xf86-video-i128: Update to 1.3.6. 2014-12-19 23:28:16 -05:00
xf86-video-intel-compat-api.patch gnu: xf86-video-intel: Update to 2.21.15. 2014-12-19 23:28:16 -05:00
xf86-video-intel-glibc-2.20.patch gnu: xf86-video-intel: Update to 2.21.15. 2014-12-19 23:28:16 -05:00
xf86-video-mach64-glibc-2.20.patch gnu: xf86-video-mach64: Update to 6.9.4. 2014-12-19 23:28:16 -05:00
xf86-video-mga-glibc-2.20.patch gnu: xf86-video-mga: Update to 1.6.3. 2014-12-19 23:28:16 -05:00
xf86-video-nv-remove-mibstore.patch gnu: xf86-video-nv: Update to 2.1.20. 2014-12-19 23:28:16 -05:00
xf86-video-openchrome-glibc-2.20.patch gnu: xf86-video-openchrome: Update to 0.3.3. 2014-12-19 23:28:16 -05:00
xf86-video-r128-glibc-2.20.patch gnu: xf86-video-r128: Update to 6.9.2. 2014-12-19 23:28:16 -05:00
xf86-video-siliconmotion-remove-mibstore.patch gnu: xf86-video-siliconmotion: Update to 1.7.7. 2014-12-19 23:28:17 -05:00
xf86-video-sis-update-api.patch gnu: xf86-video-sis: Update to 0.10.7. 2014-12-19 23:28:17 -05:00
xf86-video-tdfx-remove-mibstore.patch gnu: xf86-video-tdfx: Update to 1.4.5. 2014-12-19 23:28:17 -05:00
xf86-video-tga-remove-mibstore.patch gnu: xf86-video-tga: Update to 1.2.2. 2014-12-19 23:28:17 -05:00
xf86-video-trident-remove-mibstore.patch gnu: xf86-video-trident: Update to 1.3.6. 2014-12-19 23:28:17 -05:00
xf86-video-vmware-glibc-2.20.patch gnu: xf86-video-vmware: Update to 13.0.2. 2014-12-19 23:28:18 -05:00
xfce4-panel-plugins.patch gnu: xfce4-panel: Support panel plugins from other packages. 2014-12-14 19:45:59 -05:00
xmodmap-asprintf.patch