Commit graph

634 commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
99db6db7be
gnu: Use HTTPS for bioconductor.org.
* gnu/packages/bioinformatics.scm (r-homo-sapiens)[source]: Use HTTPS.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked,
r-cghcall, r-diffbind, r-cghbase, r-ripseeker, r-chippeakanno,
r-qdnaseq, r-marray, r-multtest)[home-page]: Likewise.
* gnu/packages/graph.scm (r-rgraphviz)[home-page]: Likewise.
2020-01-21 00:43:39 +01:00
Ricardo Wurmus
d1ac643062
gnu: r-variancepartition: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus
e8ccb98a08
gnu: r-flowworkspace: Update to 3.34.1.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus
3f42bd81a5
gnu: r-ropls: Update to 1.18.6.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus
516fa945b3
gnu: r-mlinterfaces: Update to 1.66.2.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2.
[propagated-inputs]: Remove r-rda.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus
ac9a9c374c
gnu: r-clusterprofiler: Update to 3.14.3.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus
99e2a24978
gnu: r-inspect: Update to 1.16.2.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus
7a8fcdaccc
gnu: r-regioner: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus
f8f181ae41
gnu: r-affycoretools: Update to 1.58.4.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4.
[propagated-inputs]: Add r-glimma.
2020-01-16 06:53:31 +01:00
Ricardo Wurmus
bd824de3ad
gnu: r-inspect: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1.
[propagated-inputs]: Add r-gdata.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
c314ff7cd4
gnu: r-multiassayexperiment: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
0718948912
gnu: r-rgadem: Update to 2.34.1.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.1.
[propagated-inputs]: Add r-genomicranges.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
0be4d7de9c
gnu: r-clusterprofiler: Update to 3.14.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.2.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
7621bf2d19
gnu: r-enrichplot: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
eb6d1adf15
gnu: r-biocsingular: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
be94400cd4
gnu: r-affycoretools: Update to 1.58.3.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.3.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
77e2de3654
gnu: Add r-biodist.
* gnu/packages/bioconductor.scm (r-biodist): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
0156297f29
gnu: Add r-biocworkflowtools.
* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
43b66e3f7c
gnu: Add r-biocset.
* gnu/packages/bioconductor.scm (r-biocset): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
4a18112dfb
gnu: Add r-biocpkgtools.
* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
4d12c1e335
gnu: Add r-biocor.
* gnu/packages/bioconductor.scm (r-biocor): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
c2b36a0441
gnu: Add r-bioconcotk.
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
0678479391
gnu: Add r-multiassayexperiment.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
244270e6ae
gnu: Add r-experimenthub.
* gnu/packages/bioconductor.scm (r-experimenthub): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
49f0860be0
gnu: Add r-biocgraph.
* gnu/packages/bioconductor.scm (r-biocgraph): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
f180be2923
gnu: Add r-bioccasestudies.
* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
21afe920f1
gnu: Add r-ebarrays.
* gnu/packages/bioconductor.scm (r-ebarrays): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
f388834e11
gnu: Add r-reactomepa.
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
c373223e63
gnu: Add r-graphite.
* gnu/packages/bioconductor.scm (r-graphite): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
ff1146b9b1
gnu: Add r-curatedtcgadata.
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
6f15ea2415
gnu: Add r-reactome-db.
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
29fd736a66
gnu: Add r-biobroom.
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
48bcbef07a
gnu: Add r-bioassayr.
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
991554fc92
gnu: Add r-chemminer.
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
d38775b13f
gnu: Add r-bigpint.
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
820373dbc8
gnu: Add r-bigmemoryextras.
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
6ca6f8663b
gnu: Add r-biggr.
* gnu/packages/bioconductor.scm (r-biggr): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
5aef09bd0e
gnu: Add r-hyperdraw.
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
75a8bb3185
gnu: Add r-hypergraph.
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
e823337c6e
gnu: Add r-rsbml.
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
40fe63ad8a
gnu: Add r-bifet.
* gnu/packages/bioconductor.scm (r-bifet): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
de9374b73c
gnu: Add r-bicare.
* gnu/packages/bioconductor.scm (r-bicare): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
6bd50acf41
gnu: Add r-bhc.
* gnu/packages/bioconductor.scm (r-bhc): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
75eb1149f3
gnu: Add r-bgx.
* gnu/packages/bioconductor.scm (r-bgx): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
d11d6feafa
gnu: Add r-bgmix.
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
6e10ac0780
gnu: r-destiny: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0.
[propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree,
r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and
r-tidyselect; remove r-igraph.
2019-12-15 15:39:13 +01:00
Ricardo Wurmus
b4ee414880
gnu: r-siggenes: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
2019-12-15 15:39:13 +01:00
Ricardo Wurmus
4efdac562b
gnu: r-bumphunter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
2019-12-15 15:39:13 +01:00
Ricardo Wurmus
dfd4287cba
gnu: r-minfi: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
2019-12-15 15:39:13 +01:00
Ricardo Wurmus
b57cffb974
gnu: r-methylumi: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
2019-12-15 15:39:13 +01:00