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Author SHA1 Message Date
Ricardo Wurmus
7d1e02c872
gnu: r-dalex: Update to 1.2.1. 
* gnu/packages/cran.scm (r-dalex): Update to 1.2.1.
 2020-04-30 15:37:20 +02:00
Ricardo Wurmus
1514fa85e4
gnu: r-arm: Update to 1.11-1. 
* gnu/packages/cran.scm (r-arm): Update to 1.11-1.
 2020-04-30 15:37:20 +02:00
Ricardo Wurmus
b5ea7affcf
gnu: r-usethis: Update to 1.6.1. 
* gnu/packages/cran.scm (r-usethis): Update to 1.6.1.
 2020-04-30 15:37:20 +02:00
Ricardo Wurmus
78b686824d
gnu: r-rootsolve: Update to 1.8.2.1. 
* gnu/packages/cran.scm (r-rootsolve): Update to 1.8.2.1.
 2020-04-30 15:37:20 +02:00
Ricardo Wurmus
0ec790f82d
gnu: r-proxy: Update to 0.4-24. 
* gnu/packages/cran.scm (r-proxy): Update to 0.4-24.
 2020-04-30 15:37:20 +02:00
Ricardo Wurmus
0590673090
gnu: r-pkgbuild: Update to 1.0.7. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.7.
 2020-04-30 15:37:20 +02:00
Roel Janssen
eca648b65b
gnu: Add miniasm. 
* gnu/packages/bioinformatics.scm (miniasm): New variable.
 2020-04-30 15:30:16 +02:00
Ricardo Wurmus
e174231863
gnu: Add one more missing module import. 
This is a follow-up to commit 61fc72d3ac.

* gnu/packages/backup.scm: Add missing import of (gnu packages protobuf).
 2020-04-30 14:44:45 +02:00
Ricardo Wurmus
4ac3996036
gnu: Add missing module import. 
This is a follow-up to commit 61fc72d3ac.

* gnu/packages/backup.scm: Add missing import of (guix build-system cmake).
 2020-04-30 14:41:53 +02:00
Nicolas Goaziou
61fc72d3ac
gnu: Add zbackup. 
* gnu/packages/backup.scm (zbackup): New variable.
 2020-04-30 14:04:05 +02:00
Ricardo Wurmus
cf1ae79375
gnu: python2-pysnptools: Update to 0.4.11. 
* gnu/packages/python-xyz.scm (python2-pysnptools): Update to 0.4.11;
implement in terms of...
(python-pysnptools): ...this new variable.
[propagated-inputs]: Add python-dill, python-h5py, and python-psutil.
 2020-04-30 13:08:33 +02:00
Ricardo Wurmus
46d07f8472
gnu: kaldi-gstreamer-server: Fix bug. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]: Patch
master_server.py before build.
 2020-04-30 13:08:33 +02:00
Ricardo Wurmus
cb44af24c8
gnu: kaldi-gstreamer-server: Use Tornado 6. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Replace
python-tornado with python-tornado-6.
 2020-04-30 13:08:33 +02:00
Ricardo Wurmus
7395047017
gnu: Add python-tornado-6. 
* gnu/packages/python-web.scm (python-tornado-6): New variable.
 2020-04-30 13:08:33 +02:00
Ricardo Wurmus
4a148c6da3
gnu: python2-warpedlmm: Fix build. 
* gnu/packages/bioinformatics.scm (python2-warpedlmm)[propagated-inputs]: Add
python2-weave.
[arguments]: Disable tests and add "use-weave" phase.
 2020-04-30 13:08:33 +02:00
Ricardo Wurmus
ed33317893
gnu: Add python2-weave. 
* gnu/packages/python-science.scm (python2-weave): New variable.
 2020-04-30 13:08:33 +02:00
Eric Brown
1b73fbdf5e
gnu: Add r-rserve. 
* gnu/packages/cran.scm (r-rserve): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-30 13:08:33 +02:00
Guillaume Le Vaillant
f03e5ca59f
gnu: gnuradio: Fix runtime python environment for plugins. 
* gnu/packages/radio.scm (gnuradio)[native-search-paths]: Add PYTHONPATH.
  [native-inputs]: Move python ...
  [inputs]: ... here.
 2020-04-30 10:09:15 +02:00
Mark H Weaver
89ea0415b3
gnu: linux-libre: Update to 5.4.36. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.36.
(linux-libre-5.4-pristine-source): Update hash.
 2020-04-29 22:13:56 -04:00
Mark H Weaver
09b87e503d
gnu: linux-libre@5.6: Update to 5.6.8. 
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.8.
(linux-libre-5.6-pristine-source): Update hash.
 2020-04-29 22:13:15 -04:00
Mark H Weaver
5bc78570b2
gnu: linux-libre@4.19: Update to 4.19.119. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.119.
(linux-libre-4.19-pristine-source): Update hash.
 2020-04-29 22:12:10 -04:00
Ricardo Wurmus
851a3a779a
gnu: python-hacking: Update to 1.1.0. 
* gnu/packages/openstack.scm (python-hacking): Update to 1.1.0.
[arguments]: Add "delete-broken-test" phase.
[propagated-inputs]: Replace python-flake8-2.5 with python-flake8-2.6.
 2020-04-30 00:05:15 +02:00
Ricardo Wurmus
7b0e0fd5a2
gnu: python-flake8-2.5: Update to 2.6.2. 
* gnu/packages/python-xyz.scm (python-flake8-2.5): Update to 2.6.2; rename
it...
(python-flake8-2.6): ...to this.
[arguments]: Add phase "use-later-pycodestyles", and move "check" phase after
"install".
[propagated-inputs]: Explicitly list python-pycodestyle, python-entrypoints,
python-pyflakes-1.2, and python-mccabe.
 2020-04-30 00:05:15 +02:00
Ricardo Wurmus
7fea8e076f
gnu: Remove python2-flake8-2.5. 
* gnu/packages/python-xyz.scm (python2-flake8-2.5): Remove variable.
(python-flake8-2.5)[properties]: Remove.
 2020-04-30 00:05:15 +02:00
Ricardo Wurmus
a655924009
gnu: Replace python-pyflakes-0.8.1 with python-pyflakes-1.2. 
* gnu/packages/python-xyz.scm (python-pyflakes-0.8.1): Remove variable.
(python-pyflakes-1.2): New variable.
* gnu/packages/openstack.scm (python-hacking)[propagated-inputs]: Replace
python-pyflakes-0.8.1 with python-pyflakes-1.2.
 2020-04-30 00:05:14 +02:00
Ricardo Wurmus
37130eccd2
gnu: Remove python2-pyflakes-0.8.1. 
* gnu/packages/python-xyz.scm (python2-pyflakes-0.8.1): Remove variable.
 2020-04-30 00:05:14 +02:00
Ricardo Wurmus
7e3ddb6904
gnu: Add python-cmd2. 
* gnu/packages/python-xyz.scm (python-cmd2): New variable.
 2020-04-30 00:05:14 +02:00
Ricardo Wurmus
88f8a7c610
gnu: Add python-voluptuous. 
* gnu/packages/python-xyz.scm (python-voluptuous): New variable.
 2020-04-30 00:05:14 +02:00
Ricardo Wurmus
ad2736717a
gnu: python-psutil: Update to 5.7.0. 
* gnu/packages/python-xyz.scm (python-psutil): Update to 5.7.0.
 2020-04-30 00:05:10 +02:00
Marcin Karpezo
fd65311cf4
gnu: Add sbcl-stumpwm-pass. 
* gnu/packages/wm.scm (sbcl-stumpwm-pass): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2020-04-30 00:25:15 +03:00
Leo Famulari
fb5bb6bd9e
gnu: Magic Wormhole: Update to 0.12.0. 
* gnu/packages/magic-wormhole.scm (magic-wormhole): Update to 0.12.0.
 2020-04-29 16:52:29 -04:00
Leo Famulari
718c8837f9
gnu: magic-wormhole-transit-relay: Update to 0.2.1. 
* gnu/packages/magic-wormhole.scm (magic-wormhole-transit-relay): Update to
0.2.1.
 2020-04-29 16:52:29 -04:00
Leo Famulari
c5c25b39eb
gnu: magic-wormhole-mailbox-server: Update to 0.4.1. 
* gnu/packages/magic-wormhole.scm (magic-wormhole-mailbox-server): Update to
0.4.1.
 2020-04-29 16:52:25 -04:00
Marcin Karpezo
e118837ede
gnu: Add aspell-dict-pl. 
* gnu/packages/aspell.scm (aspell-dict-pl): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-29 22:50:20 +03:00
Lars-Dominik Braun
b9d96ed773
gnu: python-tortoise-orm: Update to 0.16.7 [security fixes]. 
* gnu/packages/databases.scm (python-tortoise-orm)[source]: Update to 0.16.7.
[propagated-inputs]: Propagate python-ciso8601, which is required in setup.py.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-29 15:12:15 -04:00
Lars-Dominik Braun
510472f865
gnu: python-pypika: Update to 0.37.2. 
* gnu/packages/databases.scm (python-pypika): Update to 0.37.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-29 15:12:15 -04:00
Lars-Dominik Braun
4b800bff80
gnu: python-aiosqlite: Update to 0.12.0. 
* gnu/packages/databases.scm (python-aiosqlite): Update to 0.12.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-29 15:12:15 -04:00
Leo Famulari
f224a8bb79
gnu: OpenLDAP: Update to 2.4.50 [fixes CVE-2019-{13057,13565}]. 
* gnu/packages/openldap.scm (openldap)[replacement]: Use openldap-2.4.50.
(openldap/fixed): Replace with ...
(openldap-2.4.50): ... new variable.
* gnu/packages/patches/openldap-CVE-2020-12243.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-04-29 13:44:10 -04:00
Tobias Geerinckx-Rice
19987f5efe
gnu: foo2zjs: Update to 20200426. 
* gnu/packages/cups.scm (foo2zjs): Update to 20200426.
 2020-04-29 19:31:23 +02:00
Oleg Pykhalov
587ccf4c79
gnu: emacs-vterm: Update to 0-1.e63bd65. 
* gnu/packages/emacs-xyz.scm (emacs-vterm): Update to 0-1.e63bd65.
 2020-04-29 20:10:33 +03:00
pinoaffe
1cc9947a53
gnu: Add emacs-kakoune. 
* gnu/packages/emacs-xyz.scm (emacs-kakoune): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-29 16:33:35 +02:00
pinoaffe
6d25f29143
gnu: Add emacs-ryo-modal. 
* gnu/packages/emacs-xyz.scm (emacs-ryo-modal): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-29 16:29:53 +02:00
Masaya Tojo
373c0dc95c
gnu: Add emacs-twittering-mode. 
* gnu/packages/emacs-xyz.scm (emacs-twittering-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-29 16:26:21 +02:00
Mathieu Othacehe
c537d2bcb7
tests: install: Fix device usage. 
This is a follow-up of a860eddbbd. Guided
installation tests are now run from an ISO image. Hence the main block device
is vda and not vdb anymore.

* gnu/tests/install.scm (installation-target-os-for-gui-tests): Use
%minimal-os-on-vda instead of %minimal-os.
(%minimal-os-on-vda): Make sure that it replicates the config of %minimal-os.
 2020-04-29 15:30:14 +02:00
Ricardo Wurmus
e9f93cd5f7
gnu: Add python-sphinx-autobuild. 
* gnu/packages/sphinx.scm (python-sphinx-autobuild): New variable.
 2020-04-29 13:46:07 +02:00
Ricardo Wurmus
ff5ca61d15
gnu: Add python-doc8. 
* gnu/packages/python-xyz.scm (python-doc8): New variable.
 2020-04-29 13:46:07 +02:00
Ricardo Wurmus
d0e0b865e1
gnu: Add python-livereload. 
* gnu/packages/python-web.scm (python-livereload): New variable.
 2020-04-29 13:46:07 +02:00
Ricardo Wurmus
d08782d16c
gnu: Add python-port-for. 
* gnu/packages/python-web.scm (python-port-for): New variable.
 2020-04-29 13:46:07 +02:00
Ricardo Wurmus
39a96b99fe
gnu: Add python-restructuredtext-lint. 
* gnu/packages/python-xyz.scm (python-restructuredtext-lint): New variable.
 2020-04-29 13:46:07 +02:00
Raghav Gururajan
27cb52a20b
gnu: gnome-calendar: Propagate evolution-data-server. 
* gnu/packages/gnome.scm (gnome-calendar)[inputs]: Move evolution-data-server
from here...
[propagated-inputs]: ...to here.

Fixes <https://bugs.gnu.org/40686>.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-29 13:29:16 +02:00
Ricardo Wurmus
e979cea905
gnu: Remove python2-ws4py-for-kaldi-gstreamer-server. 
* gnu/packages/python-web.scm (python2-ws4py-for-kaldi-gstreamer-server):
Remove variable.
 2020-04-29 13:29:16 +02:00
Ricardo Wurmus
1228c2abcf
gnu: kaldi-gstreamer-server: Update to 0-2.f68cab4. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): Update to
0-2.f68cab4.
[inputs]: Replace python-2 with python-wrapper, python2-pygobject with
python-pygobject, python2-pyyaml with python-pyyaml, and python2-tornado with
python-tornado; remove python2-ws4py-for-kaldi-gstreamer-server and
python2-futures.
 2020-04-29 13:29:16 +02:00
Brice Waegeneire
8fe681b9ff
gnu: Add edid-decode. 
* gnu/packages/hardware.scm (edid-decode): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-29 11:38:42 +02:00
Alexandros Theodotou
4f0f46e4af
gnu: zrythm: Update to 0.8.333. 
* gnu/packages/music.scm (zrythm): Update to 0.8.333.
[inputs]: Add new dependencies graphviz and gtksourceview.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-04-29 10:58:05 +02:00
Paul Garlick
da6539d17b
gnu: ikiwiki: Update to 3.20200202.3. 
* gnu/packages/web.scm (ikiwiki): Update to 3.20200202.3.
 2020-04-29 09:37:15 +01:00
Paul Garlick
2933cdf88e
gnu: ikiwiki: Translate documentation. 
* gnu/packages/web.scm (ikiwiki)[inputs]: Add po4a.
[arguments]<#:phases>[patch-Makefile]: Rename to...
[arguments]<#:phases>[patch-Makefiles]: ...this.  Add build environment
paths to the PERL5LIB environment variable that is used by the 'po2wiki'
script.
 2020-04-29 09:37:14 +01:00
Paul Garlick
cf47084a88
gnu: ikiwiki: Add missing inputs. 
* gnu/packages/web.scm (ikiwiki)[inputs]: Add perl-authen-passphrase,
perl-file-mimeinfo, perl-mail-sendmail and perl-xml-twig.
 2020-04-29 09:37:13 +01:00
Paul Garlick
b7392ecbba
gnu: ikiwiki: Propagate some inputs. 
* gnu/packages/web.scm (ikiwiki)[inputs]: Move perl-html-parser,
perl-html-scrubber, perl-html-template, perl-json,
perl-text-markdown-discount, perl-uri and perl-yaml-libyaml to...
[propagated-inputs]: ...here.  New field.
 2020-04-29 09:37:12 +01:00
Paul Garlick
732ffac3bc
gnu: ikiwiki: Build perl inputs for target architecture. 
* gnu/packages/web.scm (ikiwiki)[native-inputs]: Move perl dependencies ...
[inputs]: ...to here.
 2020-04-29 09:37:11 +01:00
Paul Garlick
add3e168bb
gnu: ikiwiki: Fetch sources from git repository. 
* gnu/packages/web.scm (ikiwiki)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
[source](snippet): New field.
[arguments]<#:phases>[set-modification-times]: New phase.
 2020-04-29 09:36:29 +01:00
Guillaume Le Vaillant
cf480830e2
gnu: gnuradio: Fix search paths for third-party blocks. 
* gnu/packages/radio.scm (gnuradio)[native-search-paths]: Add definition of
  the GRC_BLOCKS_PATH variable.
 2020-04-29 10:23:23 +02:00
Mathieu Othacehe
be3abf28af
tests: install: Fix gui-installed-os test. 
This is a follow-up of a860eddbbd. If using an
ISO, the main disk is vda and not vdb anymore.

* gnu/tests/install.scm (installation-target-os-for-gui-tests): Use vda2 as
swap partition.
 2020-04-29 10:12:55 +02:00
Mathieu Othacehe
ae1a0f7583
tests: install: Increase virtual machine RAM. 
It seems that 'guix system init' is consuming more than the 800M of RAM
currently allocated. Until this is understood, bump the limit to 1.2G.

Reported here:
https://lists.gnu.org/archive/html/bug-guix/2020-04/msg00519.html

* gnu/tests/install.scm (run-install): Bump RAM to 1.2G.
 2020-04-29 10:08:54 +02:00
Guillaume Le Vaillant
f93eebbf9c
gnu: Add xnec2c. 
* gnu/packages/radio.scm (xnec2c): New variable.
 2020-04-29 01:17:37 +02:00
Ludovic Courtès
1797fe1321
gnu: guile-json: Update to 3.5.0. 
* gnu/packages/guile.scm (guile-json-3): Update to 3.5.0.
 2020-04-28 23:28:17 +02:00
Ludovic Courtès
ce0f1b1eef
gnu: guix: Update to 619f918. 
* gnu/packages/package-management.scm (guix): Update to 619f918.
 2020-04-28 23:28:17 +02:00
Efraim Flashner
0b25812872
gnu: openldap: Fix CVE-2020-12243. 
* gnu/packages/openldap.scm (openldap)[replacement]: New field.
(openldap/fixed): New variable.
* gnu/packages/patches/openldap-CVE-2020-12243.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2020-04-28 22:52:20 +03:00
Efraim Flashner
cd8c419722
gnu: valgrind: Update source uri. 
* gnu/packages/valgrind.scm (valgrind)[source]: Remove valgrind host,
add sourceware host.
[home-page]: Use https.
 2020-04-28 22:33:40 +03:00
Pierre Neidhardt
27112236ce
gnu: sbcl: Update to 2.0.4. 
* gnu/packages/lisp.scm (sbcl): Update to 2.0.4.
 2020-04-28 21:10:46 +02:00
Pierre Neidhardt
a84b7a4af5
gnu: sbcl-parenscript: Update to 2.7.1. 
* gnu/packages/lisp-xyz.scm (sbcl-parenscript): Update to 2.7.1.
 2020-04-28 21:10:46 +02:00
Diego Nicola Barbato
19e1f12ce4
gnu: emacs-telega: Test Emacs environment on startup. 
Print a more helpful error message when someone attempts to run Telega on an
incompatible Emacs (e.g a 32-bit Emacs without wide ints).

* gnu/packages/patches/emacs-telega-test-env.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs-xyz.scm (emacs-telega)[source]: Use it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-28 20:44:30 +03:00
Diego Nicola Barbato
a663b7040c
gnu: emacs-telega: Build with emacs-wide-int on 32-bit systems. 
Fixes <https://bugs.gnu.org/39406>.
Reported by <lmedeiros@riseup.net>.

* gnu/packages/emacs-xyz.scm (emacs-telega)[native-inputs]: Replace emacs with
emacs-wide-int on 32-bit systems.  This is needed because Telega requires
64-bit wide ints.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-28 20:44:30 +03:00
Diego Nicola Barbato
abbca232ca
gnu: Add emacs-wide-int. 
* gnu/packages/emacs.scm (emacs-wide-int): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-28 20:44:27 +03:00
Christopher Lemmer Webber
b2c1d4a273
gnu: Add emacs-magit-annex. 
* gnu/packages/emacs-xyz.scm (emacs-magit-annex): New variable.
 2020-04-28 12:30:41 -04:00
Alexandros Theodotou
ae0f26b8f4
gnu: lv2: Update to 1.18.0. 
* gnu/packages/audio.scm (lv2): Update to 1.18.0.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-04-28 18:20:28 +02:00
Nicolas Goaziou
3b33e0e4ba
gnu: kakoune: Update to 2020.01.16. 
* gnu/packages/text-editors.scm (kakoune): Update to 2020.01.16.
 2020-04-28 18:18:44 +02:00
John Soo
9615c8511f
gnu: emacs-evil-org: Update to 1.0.2. 
* gnu/packages/emacs-xyz.scm (emacs-evil-org): Update to 1.0.2.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-28 17:30:50 +02:00
Joseph LaFreniere
f15d324afa
gnu: emacs-sx: Update to 20191229. 
* gnu/packages/emacs-xyz.scm (emacs-sx): Update to 20191229.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-28 17:29:51 +02:00
Joseph LaFreniere
b3d04190f4
gnu: Add emacs-toml-mode. 
* gnu/packages/emacs-xyz.scm (emacs-toml-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-28 17:27:47 +02:00
Marius Bakke
085948fbfc
gnu: ungoogled-chromium: Update to 81.0.4044.129-0.c2a89fb [security fixes]. 
This fixes CVE-2020-6462 and CVE-2020-6461.

* gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.129.
(%ungoogled-revision): Set to c2a89fb6b5b559c826796c811741fa8ed3e11de8.
(%chromium-origin, %ungoogled-origin): Update hashes.
 2020-04-28 14:38:38 +02:00
Ricardo Wurmus
545e12f40d
gnu: Add variant-tools. 
* gnu/packages/bioinformatics.scm (variant-tools): New variable.
 2020-04-28 12:23:28 +02:00
Ricardo Wurmus
0b2c883828
gnu: Add hdf5-blosc. 
* gnu/packages/maths.scm (hdf5-blosc): New variable.
 2020-04-28 12:23:28 +02:00
Ricardo Wurmus
9a2fcb6325
gnu: Add c-blosc. 
* gnu/packages/compression.scm (c-blosc): New variable.
 2020-04-28 12:23:28 +02:00
Boris A. Dekshteyn
83812f34d7
gnu: Add kbdd-0.7.1 
* gnu/packages/xdisorg.scm (kbdd): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-04-28 11:51:06 +02:00
Pierre Neidhardt
8ac4be51de
gnu: ecl: Update to 20.4.24. 
* gnu/packages/lisp.scm (ecl): Update to 20.4.24.
[native-inputs]: Add texinfo to make the manual.
[license]: Set to lgpl2.1+.
 2020-04-28 11:47:46 +02:00
Pierre Neidhardt
143eaa82d6
gnu: sbcl-cl-cffi-gtk: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:46 +02:00
Pierre Neidhardt
80d8c00c84
gnu: sbcl-cl-cffi-gtk-gdk: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt
2666a3361e
gnu: sbcl-cl-cffi-gtk-gdk-pixbuf: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk-pixbuf)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt
d27f033f97
gnu: sbcl-cl-cffi-gtk-pango: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-pango)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt
8f46a9d67f
gnu: sbcl-cl-cffi-gtk-cairo: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-cairo)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt
6a7f366864
gnu: sbcl-cl-cffi-gtk-gio: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gio)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt
eac71f54fe
gnu: sbcl-cl-cffi-gtk-gobject: Link source to parent to reduce closure size. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gobject)[arguments]: Replace source
  folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
 2020-04-28 11:47:45 +02:00
Pierre Neidhardt
ef3cc2d883
gnu: Add emacs-trashed. 
* gnu/packages/emacs-xyz.scm (emacs-trashed): New variable.
 2020-04-28 11:47:45 +02:00
Guillaume Le Vaillant
62d45e463c
gnu: gnuradio-osmosdr: Add hackrf support. 
* gnu/packages/radio.scm (gnuradio-osmosdr)[inputs]: Add hackrf.
 2020-04-28 10:17:08 +02:00
Christopher Howard
79c4fb4f36
gnu: Add hackrf. 
* gnu/packages/radio.scm (hackrf): New variable.

Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
 2020-04-28 10:17:08 +02:00
Roel Janssen
0ae8505288
gnu: hpcguix-web: Use guile3.0-guix. 
* gnu/packages/web.scm (hpcguix-web): Update to latest revision and use
  guile3.0 inputs.
 2020-04-28 10:13:30 +02:00
Konrad Hinsen
d9e9a26176
gnu: python-scikit-learn: Make python-joblib a propagated input. 
* gnu/packages/machine-learning.scm (python-scikit-learn)
[native-inputs]: Move 'python-joblib' to ...
[propagated-inputs]: ... here.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-28 09:34:29 +02:00
Ricardo Wurmus
b3cf5f8601
gnu: gst-kaldi-nnet2-online: Update to 0-2.cb227ef. 
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-2.cb227ef.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus
0877b74f6e
gnu: kaldi: Update to 0-2.d4791c0. 
* gnu/packages/machine-learning.scm (kaldi): Update to 0-2.d4791c0.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus
9c726c485a
gnu: r-hdf5array: Update to 1.14.4. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.4.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus
cda0683295
gnu: r-seurat: Update to 3.1.5. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.5.
[propagated-inputs]: Remove r-metap.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus
ed720abc26
gnu: r-topicmodels: Update to 0.2-11. 
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-11.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus
1d9e71ed29
gnu: r-stopwords: Update to 2.0. 
* gnu/packages/cran.scm (r-stopwords): Update to 2.0.
[propagated-inputs]: Add r-desc and r-usethis.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus
2c439cae92
gnu: r-fda: Update to 5.1.4. 
* gnu/packages/cran.scm (r-fda): Update to 5.1.4.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus
e1fe5e9bed
gnu: r-abtest: Update to 0.2.1. 
* gnu/packages/cran.scm (r-abtest): Update to 0.2.1.
[propagated-inputs]: Add r-qgam; remove r-vgam.
 2020-04-28 08:44:04 +02:00
Ricardo Wurmus
169f9fe13a
gnu: Add r-qgam. 
* gnu/packages/cran.scm (r-qgam): New variable.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
5ffe706b84
gnu: r-systemfonts: Update to 0.2.0. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.0.
[inputs]: Remove freetype.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
8165bf6d90
gnu: r-dalex: Update to 1.2.0. 
* gnu/packages/cran.scm (r-dalex): Update to 1.2.0.
[propagated-inputs]: Add r-ibreakdown and r-ingredients.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
1816cb262c
gnu: r-rex: Update to 1.2.0. 
* gnu/packages/cran.scm (r-rex): Update to 1.2.0.
[propagated-inputs]: Remove r-magrittr.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
838ec254a0
gnu: r-optparse: Update to 1.6.6. 
* gnu/packages/cran.scm (r-optparse): Update to 1.6.6.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
bf4e440c19
gnu: r-sf: Update to 0.9-2. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-2.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
5123ec7858
gnu: r-future-apply: Update to 1.5.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.5.0.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
c6eb1fe616
gnu: r-etm: Update to 1.1. 
* gnu/packages/cran.scm (r-etm): Update to 1.1.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
fbcbf8d586
gnu: r-future: Update to 1.17.0. 
* gnu/packages/cran.scm (r-future): Update to 1.17.0.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
d62d838bf9
gnu: r-protviz: Update to 0.6.4. 
* gnu/packages/cran.scm (r-protviz): Update to 0.6.4.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
71c0a61cac
gnu: r-rgl: Update to 0.100.54. 
* gnu/packages/cran.scm (r-rgl): Update to 0.100.54.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
e2a50e5ec4
gnu: r-ggeffects: Update to 0.14.3. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.3.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
09410f17d2
gnu: r-bayestestr: Update to 0.6.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.6.0.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
27588b365f
gnu: r-emmeans: Update to 1.4.6. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.6.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:03 +02:00
Ricardo Wurmus
09bb872aff
gnu: r-raster: Update to 3.1-5. 
* gnu/packages/cran.scm (r-raster): Update to 3.1-5.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
35f84a7f27
gnu: r-insight: Update to 0.8.3. 
* gnu/packages/cran.scm (r-insight): Update to 0.8.3.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
f1f77bb64e
gnu: r-tinytex: Update to 0.22. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.22.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
e965442b38
gnu: r-tsp: Update to 1.1-10. 
* gnu/packages/cran.scm (r-tsp): Update to 1.1-10.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
839c39b178
gnu: r-broom: Update to 0.5.6. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.6.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
92d81a5e5b
gnu: r-distillery: Update to 1.0-7. 
* gnu/packages/cran.scm (r-distillery): Update to 1.0-7.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
4c0cf66cfc
gnu: r-ff: Update to 2.2-14.2. 
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.2.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
d911e22af3
gnu: r-powerlaw: Update to 0.70.6. 
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.6.
[propagated-inputs]: Remove r-vgam; add r-pracma.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
92f5ed2fd7
gnu: r-shinyfiles: Update to 0.8.0. 
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.8.0.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
50f298a54f
gnu: Add r-ibreakdown. 
* gnu/packages/cran.scm (r-ibreakdown): New variable.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
befa394f45
gnu: Add r-ingredients. 
* gnu/packages/cran.scm (r-ingredients): New variable.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
d29cd83bd8
gnu: r-purrr: Update to 0.3.4. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.4.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
0e3003930e
gnu: r-plotrix: Update to 3.7-8. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-8.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
67aced6323
gnu: r-withr: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-withr): Update to 2.2.0.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:02 +02:00
Ricardo Wurmus
7ef5f77b91
gnu: r-xml2: Update to 1.3.2. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.2.
 2020-04-28 08:44:01 +02:00
Ricardo Wurmus
568d1d7bfc
gnu: r-dbplyr: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.3.
[propagated-inputs]: Add r-lifecycle.
[native-inputs]: Add r-knitr.
 2020-04-28 08:44:01 +02:00
Ricardo Wurmus
666d97964a
gnu: r-tibble: Update to 3.0.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.1.
 2020-04-28 08:44:01 +02:00
Ricardo Wurmus
288ab9039b
gnu: r-foreign: Update to 0.8-78. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-78.
 2020-04-28 08:44:01 +02:00
Ricardo Wurmus
c1dc7858d7
gnu: r-with-tests, r-minimal: Update to 4.0.0. 
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.0.
(r-with-tests)[arguments]: Add phase "set-locales".
[native-inputs]: Add texlive-ae, texlive-inconsolata, and
texlive-latex-xkeyval to texlive-union.
[inputs]: Replace pcre with pcre2.
 2020-04-28 08:44:01 +02:00
Björn Höfling
89909327d0
gnu: stellarium: Update to 0.20.1. 
* gnu/packages/astronomy.scm (stellarium): Update to 0.20.1.
 2020-04-28 00:23:35 +02:00
Roel Janssen
78799a6fdc
gnu: Update minimap2 to 2.17. 
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.17.
 2020-04-27 21:34:10 +02:00
Oleg Pykhalov
693d0fffc8
gnu: Add sbcl-stumpwm-swm-gaps. 
* gnu/packages/wm.scm (sbcl-stumpwm-swm-gaps): New variable.
 2020-04-27 22:21:35 +03:00
Vincent Legoll
bb6d9e2633
gnu: tarsplitter: Fix typo in description (spilt/split). 
* gnu/packages/compression.scm (tarsplitter)[description]: Fix typo.
 2020-04-27 20:43:32 +02:00
Alex McGrath
58a361fef4
gnu: Add wf-recorder. 
* gnu/packages/video.scm (wf-recorder): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-27 18:22:56 +02:00
Raghav Gururajan
c53886a55a
gnu: ktsuss: Use setuid "su" and "sudo" commands. 
This has ktsudo actually gain root access.

* gnu/packages/admin.scm (ktsuss)[arguments]: Instead of <sudo>/bin/{su,sudo}
file names, use the setuid' verrsions.
 2020-04-27 18:17:24 +02:00
Boris A. Dekshteyn
138896e1ea
gnu: herbstluftwm: Update to 0.8.1 
* gnu/packages/wm.scm: herbstluftwm: Update to 0.8.1

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-04-27 18:05:11 +02:00
Guillaume Le Vaillant
f38ba7b65d
gnu: fldigi: Update to 4.1.12. 
* gnu/packages/radio.scm (fldigi): Update to 4.1.12.
 2020-04-27 16:54:34 +02:00
Jakub Kądziołka
2ef4d273d1
file-systems: mount the PID cgroup filesystem. 
* gnu/system/file-systems.scm (%control-groups): Add "pids".
* gnu/services/docker.scm (docker-shepherd-service): Resolve a TODO.

This has allowed me to make a specific configuration of nsjail work.
 2020-04-27 14:14:47 +02:00
Roel Janssen
639ae3f20b
gnu: Add python-scikit-rebate. 
* gnu/packages/machine-learning.scm (python-scikit-rebate): New variable.
 2020-04-27 13:54:43 +02:00
Roel Janssen
ccf70a80a1
gnu: Add python-deeptools. 
* gnu/packages/bioinformatics.scm (python-deeptools): New variable.
 2020-04-27 13:43:05 +02:00
Roel Janssen
c43edf6f30
gnu: Add python-deeptoolsintervals. 
* gnu/packages/bioinformatics.scm (python-deeptoolsintervals): New variable.
 2020-04-27 13:39:25 +02:00
Roel Janssen
4c24186ae0
gnu: Add python-bitarray. 
* gnu/packages/python-xyz.scm (python-bitarray): New variable.
 2020-04-27 13:09:02 +02:00
Roel Janssen
06fc1a5142
gnu: Add r-cummerbund. 
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
 2020-04-27 11:46:08 +02:00
Roel Janssen
91370829f4
gnu: Add r-inum. 
* gnu/packages/cran.scm (r-inum): New variable.
 2020-04-27 11:15:38 +02:00
Roel Janssen
415176e89d
gnu: Add r-ggpmisc. 
* gnu/packages/cran.scm (r-ggpmisc): New variable.
 2020-04-27 11:05:49 +02:00
Roel Janssen
0c0ef9c5a6
gnu: Add r-coverageview. 
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
 2020-04-27 10:57:22 +02:00
Ricardo Wurmus
d4f86c8b66
gnu: Add peek. 
* gnu/packages/video.scm (peek): New variable.
 2020-04-27 10:46:12 +02:00
Ricardo Wurmus
c170a15996
gnu: emacs-org-reveal: Fix syntax error in description. 
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[description]: Fix Texinfo
syntax error.
 2020-04-27 10:45:51 +02:00
Ricardo Wurmus
320dd1195e
gnu: Add texlive-inconsolata. 
* gnu/packages/tex.scm (texlive-inconsolata): New variable.
 2020-04-27 10:45:51 +02:00
Roel Janssen
8ce240fdbf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
 2020-04-27 10:43:51 +02:00
Roel Janssen
cb1ab0352b
gnu: Add r-karyoploter. 
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
 2020-04-27 10:37:42 +02:00
Roel Janssen
e658838c62
gnu: Add r-bezier. 
* gnu/packages/cran.scm (r-bezier): New variable.
 2020-04-27 10:28:50 +02:00
Roel Janssen
e8d435f7a2
gnu: Add r-ideoviz. 
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
 2020-04-27 10:24:20 +02:00
Roel Janssen
df6c7f0487
gnu: Add r-ecp. 
* gnu/packages/cran.scm (r-ecp): New variable.
 2020-04-27 10:18:48 +02:00
Roel Janssen
8521d93854
gnu: Add r-reordercluster. 
* gnu/packages/cran.scm (r-reordercluster): New variable.
 2020-04-27 10:11:21 +02:00
Maxim Cournoyer
9c63165d9e
gnu: liblinphone: Move documentation and tester to separate outputs. 
* gnu/packages/linphone.scm (liblinphone)[outputs]: Add a "doc" and "tester"
outputs.
[phases]: Add a separate-outputs phase.  Move the
glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases after it.
 2020-04-27 00:54:44 -04:00
Maxim Cournoyer
1ae4325734
gnu: liblinphone: Fix the input type of some dependencies. 
Libraries being linked to such as libxml2, libiconv and zlib should appear as
'inputs' rather than 'native-inputs'.

* gnu/packages/linphone.scm (liblinphone)[native-inputs]: Move libiconv,
libxml2 and zlib to...
[inputs]: ...here.  Move eudev, python-pystache and python-six to
native-inputs.
 2020-04-27 00:54:30 -04:00
Maxim Cournoyer
8472c26c25
gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs. 
Icon themes and theme engines are best left for the users to select and
install themselves.

* gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme.
[propagated-inputs]: Remove murrine.
 2020-04-27 00:54:30 -04:00
Brice Waegeneire
3b177a6c33
gnu: Add loadable module to wireguard-linux-compat. 
* gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace
'gnu-build-system' by 'linux-module-build-system'.
[outputs]: Add 'kernel-patch'.
[arguments]: Adjust the build system. Add phases 'change-directory' and
'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to
'install-patch'.
[description]: Mention the loadable module.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-04-26 18:24:28 -04:00
Ludovic Courtès
0e5c2d5e14
services: system: Initial entries are non-monadic. 
* gnu/system.scm (operating-system-directory-base-entries): Return a
regular, non-monadic value.
* gnu/services.scm (system-derivation): Adjust accordingly.
* gnu/system/linux-container.scm (container-essential-services): Likewise.
 2020-04-26 22:49:49 +02:00
Ludovic Courtès
45bd91334f
services: profile: Use a declarative profile. 
* gnu/services.scm (packages->profile-entry): Use 'profile' instead of
'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Ludovic Courtès
cda751105e
system: 'operating-system-directory-base-entries' uses 'profile'. 
* gnu/system.scm (operating-system-directory-base-entries): Use a
declarative profile instead of 'profile-derivation'.
 2020-04-26 22:49:48 +02:00
Roel Janssen
1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description. 
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
 2020-04-26 21:47:19 +02:00
Roel Janssen
63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
  variable.
 2020-04-26 21:34:49 +02:00
Maxim Cournoyer
b58a22e5b7
gnu: Add hackneyed-x11-cursors. 
* gnu/packages/xorg.scm (hackneyed-x11-cursors): New variable.
 2020-04-26 15:32:10 -04:00
Roel Janssen
886125d791
gnu: Add r-motifbreakr. 
* gnu/packages/bioconductor.scm (r-motifbreakr): New variable.
 2020-04-26 21:24:03 +02:00
Roel Janssen
3699bcf54a
gnu: Add r-motifdb. 
* gnu/packages/bioconductor.scm (r-motifdb): New variable.
 2020-04-26 21:07:45 +02:00
Roel Janssen
ec20858a6a
gnu: Add r-pasilla. 
* gnu/packages/bioconductor.scm (r-pasilla): New variable.
 2020-04-26 21:02:00 +02:00
Christopher Baines
f476238431
gnu: guile3.0-chickadee: Rename to guile3.0-chickadee. 
This avoids having to packages, both called guile-chickadee.

* gnu/packages/game-development.scm (guile3.0-chickadee)[name]: Change from
guile-chickadee to guile3.0-chickadee.
 2020-04-26 19:44:33 +01:00
Christopher Baines
53aa66c3df
reconfigure: Don't call build-derivations for upgrade-services test 
This commit adjusts the upgrade-services system test to not build anything
when computing the derivation for the system test.  I came across this when
looking at issues computing the system test derivations to store in the Guix
Data Service.

* gnu/tests/reconfigure.scm (run-upgrade-services-test): Remove the use of,
and definition for ensure-service-file.
 2020-04-26 19:41:56 +01:00
Lars-Dominik Braun
910bf1f7a1
gnu: Add tarsplitter. 
* gnu/packages/compression.scm (tarsplitter): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-26 21:07:43 +03:00
Leo Famulari
ca4b55882a
gnu: Add rav1e. 
* gnu/packages/video.scm (rav1e): New variable.
* gnu/packages/rust-apps.scm (rust-cbindgen-0.12, rust-cargo-c): New
variables.
* gnu/packages/crates-io.scm: Various new packages and upgrades.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-04-26 19:57:46 +03:00
Efraim Flashner
ee8de73814
gnu: python-scanpy: Update to 1.4.6. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
 2020-04-26 15:03:50 +03:00
Marius Bakke
2b829898c7
gnu: python-publicsuffix2: Adjust for Guile 3.0. 
* gnu/packages/python-web.scm (python-publicsuffix2): Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
52bdd30407
gnu: nim: Adjust for Guile 3.0. 
* gnu/packages/nim.scm (nim)[arguments]: Provide explicit destination in calls
to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
05e3ed302f
gnu: tpacpi-bat: Adjust for Guile 3.0. 
* gnu/packages/linux.scm (tpacpi-bat)[arguments]: Provide explicit destination
in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
30d0f7fa8f
gnu: nmoldyn: Adjust for Guile 3.0. 
* gnu/packages/chemistry.scm (nmoldyn)[arguments]: Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:16 +02:00
Marius Bakke
02de4b1da1
gnu: calcurse: Adjust for Guile 3.0. 
* gnu/packages/calcurse.scm (calcurse)[arguments]: Provide explicit
destination in calls to FORMAT.
 2020-04-26 13:31:15 +02:00
Marius Bakke
f989dffd2c
gnu: thinkfan: Adjust for Guile 3.0. 
* gnu/packages/linux.scm (thinkfan)[arguments]: Provide explicit destination
in calls to FORMAT (destination is no longer optional with Guile 3).
 2020-04-26 13:31:15 +02:00
Eric Brown
660611e5f6
gnu: Add sylpheed. 
* gnu/packages/mail.scm (sylpheed): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:47:19 +02:00
Raghav Gururajan
0745e28d66
gnu: Add xarchiver. 
* gnu/packages/compression (xarchiver): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:25:59 +02:00
Giacomo Leidi
0bf66cbb72
gnu: Add python-osc. 
* gnu/packages/python-xyz.scm (python-osc): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:15:09 +02:00
Evan Straw
bb85018ceb
gnu: hugin: Update to 2019.2.0. 
* gnu/packages/photo.scm (hugin): Update to 2019.2.0.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2020-04-26 12:14:49 +02:00
Arun Isaac
018114baa7
gnu: maradns: Fix cross compilation. 
* gnu/packages/dns.scm (maradns)[arguments]: Build make_32bit_tables for the
host.
 2020-04-26 15:14:46 +05:30
Marius Bakke
796b387bc2
vm: Remove unused import. 
* gnu/system/vm.scm: Do not import (gnu packages make-bootstrap).
 2020-04-26 11:27:06 +02:00
Efraim Flashner
186f99f0f7
gnu: perl-glib: Update to 1.3292. 
* gnu/packages/glib.scm (perl-glib): Update to 1.3292.
 2020-04-26 10:22:14 +03:00
Leo Famulari
a17e5092bc
gnu: svt-av1: Update to 0.8.2. 
* gnu/packages/video.scm (svt-av1): Update to 0.8.2.
 2020-04-25 22:26:49 -04:00
Vagrant Cascadian
9b7e41f2d7
gnu: arm-trusted-firmware: Update to 2.3. 
* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.3.
  [source]: Remove hdcp patch.
* gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch: Remove patch.
* gnu/local.mk: Update accordingly.
 2020-04-25 17:08:52 -07:00
Oleg Pykhalov
396eb9e1a9
gnu: Add sbcl-stumpwm-globalwindows. 
* gnu/packages/wm.scm (sbcl-stumpwm-globalwindows): New variable.
 2020-04-26 01:59:33 +03:00
Raghav Gururajan
5cca16968e
gnu: pavucontrol: Fix icons. 
* gnu/packages/pulseaudio.scm (pavucontrol): Fix icons.
[build-system]: Use glib-or-gtk-build-system instead of gnu-build-system.
[inputs]: Add adwaita-icon-theme.  Re-order inputs.

Since the adwaita icon theme is hard-coded in the application, there is
no choice for the user anyway. So added adwaita-icon-theme to inputs and
changed build-system to glib-or-gtk to fix loading of icons.
 2020-04-25 23:01:29 +02:00
Boris A. Dekshteyn
3a5d1c9b6b
gnu: fontmanager: Update to 0.7.7. 
* gnu/packages/fontutils.scm (fontmanager): Update to 0.7.7.
 2020-04-25 22:54:11 +02:00
Holger Peters
b0ec8c675e
gnu: python-webob: Update to 1.8.3 
* gnu/packages/python-web.scm (python-webob): Update to 1.8.3.
 2020-04-25 22:38:11 +02:00
Holger Peters
82bd276d60
gnu: python-pastedeploy: Update to 2.1.0 
* gnu/packages/python-web.scm (python-pastedeploy): Update to 2.1.0.
[arguments]: Add test-target.
[native-inputs]: Replace python-nose with python-pytest and python-pytest-runner.
 2020-04-25 22:38:11 +02:00
Oskar Köök
731e92f0f8
gnu: elixir: Update to 1.10.3. 
* gnu/packages/elixir.scm (elixir): Update to 1.10.3.
 2020-04-25 22:26:48 +02:00
TomZ
813a88bb5a
gnu: flowee: Update to 2020.03.2 
* gnu/packages/finance.scm (flowee): Update to 2020.03.2
 2020-04-25 22:24:00 +02:00
Matthew Kraai
ba11dddbfe
gnu: texlive-latex-pdfx: Fix typo. 
* gnu/packages/tex.scm (texlive-latex-pdfx)[description]: Fix typo.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-25 22:23:20 +02:00
Efraim Flashner
e56ab46ba0
gnu: python-reportlib: Update to 3.5.42. 
* gnu/packages/pdf.scm (python-reportlib): Update to 3.5.42.
 2020-04-25 22:51:37 +03:00
Efraim Flashner
2d8270ad56
gnu: python-reportlib: Add missing libraries. 
* gnu/packages/pdf.scm (python-reportlib)[arguments]: Add
'use-system-libart' configure flag. Add custom phase to find libraries.
[inputs]: Add libart-lgpl, font-curve-files.
 2020-04-25 22:46:34 +03:00
Pierre Neidhardt
8cf6d150b4
gnu: Add osicat. 
* gnu/packages/lisp-xyz.scm (closicat, sbcl-osicat): New variables.
 2020-04-25 19:45:29 +02:00
Mark H Weaver
f84b036305
gnu: webkitgtk: Update to 2.28.2. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.28.2.
 2020-04-24 23:20:09 -04:00
Mark H Weaver
f2ce2d1274
gnu: linux-libre@5.6: Update deblob scripts. 
* gnu/packages/linux.scm (deblob-scripts-5.6): Update to 5.6.7.
 2020-04-24 19:06:13 -04:00
Pierre Langlois
c10e8cf75e
gnu: u-boot: Update to 2020.04. 
* gnu/packages/bootloaders (u-boot): Update to 2020.04.
  [native-inputs]: Replace sdl with sdl2.

Co-authored-by: Vagrant Cascadian <vagrant@debian.org>
 2020-04-24 15:59:44 -07:00
Arun Isaac
0d36d0baea
gnu: Add maradns. 
* gnu/packages/dns.scm (maradns): New variable.
 2020-04-25 03:43:08 +05:30
Mark H Weaver
1317ff3259
gnu: linux-libre@4.14: Update to 4.14.177. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.177.
(linux-libre-4.14-pristine-source): Update hash.
 2020-04-24 18:07:54 -04:00
Mark H Weaver
0c8941b504
gnu: linux-libre@4.9: Update to 4.9.220. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.220.
(linux-libre-4.9-pristine-source): Update hash.
 2020-04-24 18:07:18 -04:00
Mark H Weaver
9c8b5d5e08
gnu: linux-libre@4.4: Update to 4.4.220. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.220.
(linux-libre-4.4-pristine-source): Update hash.
 2020-04-24 18:06:14 -04:00
Jack Hill
45320ad808
gnu: pdfpc: Upgrade to 4.4.0 
* gnu/packages/pdf.scm (pdfpc): Upgrade to 4.4.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2020-04-24 23:24:23 +02:00
Marius Bakke
5e57967652
gnu: python-pytest-timeout: Update to 1.3.4. 
* gnu/packages/check.scm (python-pytest-timeout): Update to 1.3.4.
[arguments]: Override check phase.
[native-inputs]: Add PYTHON-PEXPECT.
 2020-04-24 23:24:23 +02:00
Raghav Gururajan
ddb0fef554
gnu: Add ktsuss. 
* gnu/packages/admin.scm (ktsuss): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-04-24 22:10:57 +02:00
Raghav Gururajan
bf37b49cdd
gnu: spacefm: Add dependencies for extra functionality. 
* gnu/packages/lxde.scm (spacefm): Add dependencies for extra functionality.

Adding these inputs and making required changes to build-system+arguments;
provides icons, privilege-management and disk-management.
 2020-04-24 22:03:09 +02:00
Marius Bakke
9b42918edd
gnu: guix: Update to 7dd0539. 
* gnu/packages/package-management.scm (guix): Update to 1.1.0-1.7dd0539.
 2020-04-24 16:53:43 +02:00
Ludovic Courtès
40fd909e3d
gnu: biber: Downgrade to 2.11. 
Biber 2.12 is incompatible with biblatex 3.11, which is what's currently
packaged.  This is a followup to 41a010875b.

* gnu/packages/tex.scm (biber): Downgrade to 2.11.
 2020-04-24 16:22:02 +02:00
Ludovic Courtès
122b3cd68d
gnu: biber: Address test failures. 
* gnu/packages/patches/biber-sortinithash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (biber)[source]: Use it.
 2020-04-24 16:21:13 +02:00
Ludovic Courtès
2520059bdb
pack: 'guix pack -R' wrapper correctly reports exit code. 
Fixes <https://bugs.gnu.org/40816>.
Reported by Jan (janneke) Nieuwenhuizen <janneke@gnu.org>.

* gnu/packages/aux-files/run-in-namespace.c (main): In the 'default'
case, check 'WIFEXITED (status)' and exit with the corresponding code in
that case.  Exit with 255 in other cases.
* tests/guix-pack-relocatable.sh: Add test.
 2020-04-24 16:21:13 +02:00
Ludovic Courtès
193192ca77
gnu: llvm: Add 10.0.0. 
* gnu/packages/llvm.scm (llvm-10, clang-runtime-10, clang-10)
(clang-toolchain-10, llvm-9, clang-runtime-9, clang-9)
(clang-toolchain-9): New variables.
(llvm, clang, clang-runtime, clang-toolchain): Redefine as aliases to
the '-9' bindings.
* gnu/packages/patches/clang-10.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2020-04-24 16:21:13 +02:00
Naga Malleswari
4ac3461a80
gnu: Add r-rxnat. 
* gnu/packages/cran.scm (r-rxnat): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:56:54 +02:00
Naga Malleswari
5b38f038f6
gnu: Add r-rcdd. 
* gnu/packages/cran.scm (r-rcdd): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:54:42 +02:00
Naga Malleswari
53269e6971
gnu: Add r-dcv. 
* gnu/packages/cran.scm (r-dcv): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:53:21 +02:00
Ricardo Wurmus
3a8ee5ef42
gnu: r-tea: Fix typo. 
* gnu/packages/cran.scm (r-tea)[description]: Fix typo.
 2020-04-24 15:51:52 +02:00
Naga Malleswari
26e5dab74a
gnu: Add r-stam. 
* gnu/packages/cran.scm (r-stam): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:51:39 +02:00
Naga Malleswari
d234006b38
gnu: Add r-grouped. 
* gnu/packages/cran.scm (r-grouped): New variable.
 2020-04-24 15:51:39 +02:00
Naga Malleswari
aa3fdca85c
gnu: Add r-sgloptim. 
* gnu/packages/cran.scm (r-sgloptim): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:51:39 +02:00
Naga Malleswari
ea43d299fa
gnu: Add r-aws. 
* gnu/packages/cran.scm (r-aws): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:51:38 +02:00
Naga Malleswari
fe14871edd
gnu: Add r-awsmethods. 
* gnu/packages/cran.scm (r-awsmethods): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:43:01 +02:00
Naga Malleswari
ba07c7f067
gnu: Add r-tea. 
* gnu/packages/cran.scm (r-tea): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-04-24 15:40:10 +02:00
Ricardo Wurmus
a1d369f139
gnu: Add texlive-csquotes. 
* gnu/packages/tex.scm (texlive-csquotes): New variable.
 2020-04-24 15:19:35 +02:00
Efraim Flashner
1e700c656a
gnu: datamash: Update to 1.7. 
* gnu/packages/datamash.scm (datamash): Update to 1.7.
 2020-04-24 14:52:32 +03:00
Efraim Flashner
2fea2b6414
gnu: java-eclipse-jetty-test-helper: Don't use unstable tarball. 
* gnu/packages/web.scm (java-eclipse-jetty-test-helper)[source]: Download
using git-fetch.
 2020-04-24 14:52:32 +03:00
Mark H Weaver
298c113134
gnu: linux-libre: Update to 5.4.35. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.35.
(linux-libre-5.4-pristine-source): Update hash.
 2020-04-23 19:57:00 -04:00
Mark H Weaver
3fdccd5ba6
gnu: linux-libre@5.6: Update to 5.6.7. 
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.7.
(linux-libre-5.6-pristine-source): Update hash.
 2020-04-23 19:56:13 -04:00
Mark H Weaver
887c61e67f
gnu: linux-libre@4.19: Update to 4.19.118. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.118.
(linux-libre-4.19-pristine-source): Update hash.
 2020-04-23 19:55:15 -04:00
Guillaume Le Vaillant
5a91563221
gnu: Add wsjtx. 
* gnu/packages/radio.scm (wsjtx-hamlib): New variable.
  (wsjtx): New variable.
 2020-04-24 00:00:33 +02:00
Guillaume Le Vaillant
e6d141652c
gnu: fldigi: Add hamlib support. 
* gnu/packages/radio.scm (fldigi)[inputs]: Add hamlib and libusb.
 2020-04-24 00:00:33 +02:00
Guillaume Le Vaillant
409dfdf03d
gnu: Add hamlib. 
* gnu/packages/radio.scm (hamlib): New package.
 2020-04-24 00:00:33 +02:00
Alexandros Theodotou
b90b7f16ed
gnu: Add wolf-spectrum. 
* gnu/packages/music.scm (wolf-spectrum): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-23 23:59:23 +02:00
Alexandros Theodotou
59be2959a6
gnu: Add wolf-shaper. 
* gnu/packages/music.scm (wolf-shaper): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-23 23:59:23 +02:00
Leo Famulari
0f25feb159
gnu: Squid: Update to 4.11 [fixes CVE-2020-{11945,12519,12521}]. 
* gnu/packages/networking.scm (squid): Update to 4.11.
 2020-04-23 13:25:14 -04:00
Nicolas Goaziou
54b3d583af
gnu: grammalecte: Update to 1.9.0. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.9.0.
 2020-04-23 19:17:52 +02:00
Tobias Geerinckx-Rice
0fb2bc8392
gnu: liburcu: Update to 0.12.1. 
* gnu/packages/datastructures.scm (liburcu): Update to 0.12.1.
 2020-04-23 19:07:20 +02:00
Leo Famulari
8e2a423800
gnu: GNU FreeFont: Add a deprecated alias for "font-gnu-freefont-ttf". 
This is a followup to commit 5483a2d0a9.

* gnu/packages/fonts.scm (font-gnu-freefont-ttf): New variable.
 2020-04-23 12:35:43 -04:00
Ricardo Wurmus
cf4a56d748
gnu: Add texlive-marginnote. 
* gnu/packages/tex.scm (texlive-marginnote): New variable.
 2020-04-23 15:04:12 +02:00