Mădălin Ionel Patrașcu
32be357706
gnu: python-dill: Update to 0.3.1.1.
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* gnu/packages/python-xyz.scm (python-dill): Update to 0.3.1.1.
[arguments]: Enable tests.
[native-inputs]: Add python-nose.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-19 00:01:49 +01:00
Ludovic Courtès
217b4a1587
gnupg: 'gnupg-status-missing-key?' returns a fingerprint when possible.
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Until then, 'gnupg-status-missing-key?' would return a key id. Its
user, 'gnupg-verify*', would then fetch a key with that ID from key
servers, thus possibly the wrong key (due to key ID collisions). If it
did fetch the wrong key, the effect would be a signature verification
failure down the path--e.g., in "guix refresh -u".
* guix/gnupg.scm (gnupg-verify)[maybe-fingerprint]: New procedure.
[status-line->sexp](errsig-rx): Add parenthetical expression at the end.
Fetch it and add it to the 'signature-error' sexp.
(gnupg-status-missing-key?): Match the whole 'signature-error' sexp and
return preferably the fingerprint rather than KEY-ID.
(gnupg-receive-keys): Rename 'key-id' parameter to 'fingerprint/key-id'.
2019-12-18 23:48:12 +01:00
Ludovic Courtès
9cfa322579
gnupg: 'gnupg-status-good-signature?' no longer returns a key ID.
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Returning a key ID was inconsequential because the only user of
'gnupg-status-good-signature?', (guix upstream) (via 'gnupg-verify*'),
would not check the return value as long as it's true.
* guix/gnupg.scm (gnupg-status-good-signature?): Return a
fingerprint/user pair instead of key-id/user.
(gnupg-verify*): Mention it in docstring.
2019-12-18 23:48:12 +01:00
Björn Höfling
6afea7489b
guix: swh: Fix example URI in comment for <origin>.
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This is a one-character follow-up to
356a79becc
2019-12-18 22:39:28 +01:00
Marius Bakke
9077cf68ec
gnu: libdbi-drivers: Adapt to multiple-output MariaDB.
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* gnu/packages/databases.scm (mariadb/fixed-install-db): New public variable.
(libdbi-drivers)[inputs]: Add MARIADB:DEV and MARIADB:LIB. Remove MARIADB.
[native-inputs]: Add MARIADB/FIXED-INSTALL-DB.
[arguments]: Adjust accordingly.
2019-12-18 22:36:37 +01:00
Marius Bakke
ab7010af1f
gexp: Allow character literals in GEXP->SEXP.
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Fixes <https://bugs.gnu.org/38628 >.
* tests/gexp.scm ("lower-gexp, character literal"): New test.
* guix/gexp.scm (gexp->sexp)[self-quoting?]: Add CHAR? to the tested types.
* guix/repl.scm (self-quoting?): Likewise.
* gnu/tests.scm (marionette-shepherd-service)[self-quoting?]: Likewise.
2019-12-18 22:36:37 +01:00
Marius Bakke
fe3110ac58
gnu: darktable: Update to 2.6.3.
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* gnu/packages/photo.scm (darktable): Update to 2.6.3.
2019-12-18 22:36:37 +01:00
Marius Bakke
6b1e6b5c42
gnu: darktable: Remove redundant inputs.
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* gnu/packages/photo.scm (darktable)[native-inputs]: Remove.
2019-12-18 22:36:37 +01:00
Marius Bakke
17ac8bb670
gnu: darktable: Fix build failure.
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* gnu/packages/photo.scm (darktable)[arguments]: Move CPATH override from
#:make-flags to a phase, so the GETENV call returns useful data.
2019-12-18 22:36:37 +01:00
Marius Bakke
8e53fe2b91
gnu: Remove uses of deprecated Qemu network configuration.
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* gnu/build/vm.scm (load-in-linux-vm): Move Qemu network configuration from
ARCH-SPECIFIC-FLAGS to the Qemu command line. Use the "-nic" option of Qemu
instead of "-device" and "-net".
* gnu/system/vm.scm (common-qemu-options): Do not add a '-net' command.
(virtual-machine-compiler): Use "-nic user,..." instead of "-net".
* doc/guix.texi (Installing Guix in a VM, Invoking guix system, Running Guix
in a VM): Do the same for examples.
2019-12-18 22:36:37 +01:00
Mark H Weaver
7ebf4c40f1
gnu: linux-libre: Update to 5.3.18.
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* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.18.
(linux-libre-5.3-pristine-source): Update hash.
2019-12-18 15:13:41 -05:00
Mark H Weaver
96c158be1b
gnu: linux-libre: Update deblob scripts.
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* gnu/packages/linux.scm (deblob-scripts-4.19): Update to 4.19.90.
(deblob-scripts-4.14): Update to 4.14.159.
(deblob-scripts-5.3, deblob-scripts-4.9, deblob-scripts-4.4): Update version
numbers to 5.3.17, 4.9.206, and 4.4.206, respectively, although the scripts
themselves have not changed.
2019-12-18 15:13:39 -05:00
Ricardo Wurmus
77e2de3654
gnu: Add r-biodist.
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* gnu/packages/bioconductor.scm (r-biodist): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
0156297f29
gnu: Add r-biocworkflowtools.
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* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
43b66e3f7c
gnu: Add r-biocset.
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* gnu/packages/bioconductor.scm (r-biocset): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
4a18112dfb
gnu: Add r-biocpkgtools.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
4d12c1e335
gnu: Add r-biocor.
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* gnu/packages/bioconductor.scm (r-biocor): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
c2b36a0441
gnu: Add r-bioconcotk.
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* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
0678479391
gnu: Add r-multiassayexperiment.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
2019-12-18 15:29:08 +01:00
Ricardo Wurmus
244270e6ae
gnu: Add r-experimenthub.
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* gnu/packages/bioconductor.scm (r-experimenthub): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
49f0860be0
gnu: Add r-biocgraph.
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* gnu/packages/bioconductor.scm (r-biocgraph): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
f180be2923
gnu: Add r-bioccasestudies.
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* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
21afe920f1
gnu: Add r-ebarrays.
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* gnu/packages/bioconductor.scm (r-ebarrays): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
f388834e11
gnu: Add r-reactomepa.
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* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
c373223e63
gnu: Add r-graphite.
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* gnu/packages/bioconductor.scm (r-graphite): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
3eacc8fa8f
gnu: Add r-influencer.
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* gnu/packages/cran.scm (r-influencer): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
ff1146b9b1
gnu: Add r-curatedtcgadata.
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* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
2019-12-18 15:29:07 +01:00
Ricardo Wurmus
6f15ea2415
gnu: Add r-reactome-db.
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* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
2019-12-18 15:29:07 +01:00
Efraim Flashner
7e9d6f0f3f
gnu: libmicrohttpd: Update to 0.9.69.
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* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.69.
2019-12-18 10:34:27 +02:00
Efraim Flashner
8fd6049403
gnu: cmst: Update to 2019.01.13.
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* gnu/packages/connman.scm (cmst): Update to 2019.01.13.
2019-12-18 10:29:28 +02:00
Efraim Flashner
92fe25130c
gnu: python-ecdsa: Actually run the test suite.
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* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: Replace
'check phase.
[native-inputs]: Add python-pytest.
2019-12-18 09:54:47 +02:00
Efraim Flashner
c57b8419f4
gnu: python-ecdsa: Update to 0.14.1.
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* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.14.1.
[inputs]: Move openssl ...
[native-inputs]: ... to here.
[propagated-inputs]: Add python-six.
2019-12-18 09:53:48 +02:00
Björn Höfling
356a79becc
swh: Fix API call for getting origin.
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When using the archival linter, git origins already in the archive where
not recognized due to an API change and where repeatedly asked for archival.
This is fixed here.
* guix/swh.scm (lookup-origin): Fix API URI for getting origin.
(<origin>): Fix comment with API URI example.
2019-12-17 23:29:32 +01:00
Mark H Weaver
ef6856ea72
gnu: linux-libre: Update to 5.3.17.
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* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.17.
(linux-libre-5.3-pristine-source): Update hash.
2019-12-17 17:24:23 -05:00
Mark H Weaver
a15adacb52
gnu: linux-libre@4.19: Update to 4.19.90.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.90.
(linux-libre-4.19-pristine-source): Update hash.
2019-12-17 17:23:42 -05:00
Mark H Weaver
0bb64e1796
gnu: linux-libre@4.14: Update to 4.14.159.
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* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.159.
(linux-libre-4.14-pristine-source): Update hash.
2019-12-17 17:22:36 -05:00
Ricardo Wurmus
29fd736a66
gnu: Add r-biobroom.
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* gnu/packages/bioconductor.scm (r-biobroom): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
48bcbef07a
gnu: Add r-bioassayr.
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* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
991554fc92
gnu: Add r-chemminer.
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* gnu/packages/bioconductor.scm (r-chemminer): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
d38775b13f
gnu: Add r-bigpint.
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* gnu/packages/bioconductor.scm (r-bigpint): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
820373dbc8
gnu: Add r-bigmemoryextras.
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* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
2019-12-17 20:02:18 +01:00
Ricardo Wurmus
6ca6f8663b
gnu: Add r-biggr.
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* gnu/packages/bioconductor.scm (r-biggr): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
5aef09bd0e
gnu: Add r-hyperdraw.
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* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
75a8bb3185
gnu: Add r-hypergraph.
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* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
e823337c6e
gnu: Add r-rsbml.
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* gnu/packages/bioconductor.scm (r-rsbml): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
40fe63ad8a
gnu: Add r-bifet.
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* gnu/packages/bioconductor.scm (r-bifet): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
de9374b73c
gnu: Add r-bicare.
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* gnu/packages/bioconductor.scm (r-bicare): New variable.
2019-12-17 20:02:17 +01:00
Ricardo Wurmus
6bd50acf41
gnu: Add r-bhc.
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* gnu/packages/bioconductor.scm (r-bhc): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
75eb1149f3
gnu: Add r-bgx.
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* gnu/packages/bioconductor.scm (r-bgx): New variable.
2019-12-17 20:02:16 +01:00
Ricardo Wurmus
d11d6feafa
gnu: Add r-bgmix.
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* gnu/packages/bioconductor.scm (r-bgmix): New variable.
2019-12-17 20:02:16 +01:00
